G29176


Basic Information

Item Value
gene id G29176
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17454285 ~ 17468157 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34432
CATGTTGcggtttcattttatttaaattgaacaGTTTTACAAAACTGTACATTGCAACATAAATACAAATCattaaattaacacattaaacagacagacaaagagaacGGTCACAAAAAAGGTAAAGCTTTACAAAACTTATGTtttgcaaaaccaaaaacactatTTATCCCCCATTTAAATAGTTAGAATAATTAAACATCATAAGTTATAAGTCCCCTCCAGGTTCCAGAACATTCTGTTTTGGAAATGTGTTTAGTAATCCATCAATCCGAGTCGTGCTCAGTGCAGTCACTCCGATTTATTCTGGTCCTTTGATTTCCGGTACAGTCTTATTATTCCAGAAAGGCAGGAGCTGTGGTTCATTCCGTGTCAACATTGCTAACACCCTGCTGAGTCATGCTTCCTGTTCATGCCTCGCTCTCCAGCGTGAAAGAAAATCCCCATGCTCCCGATCAGCGTGGCTGGTGGATTAGATTTCCTTGTTCCTTGCATTTTGTCGATTTTCCCCCTCCTGTCATCCTCCTTGTGGCAATGTAAAGACAGTCCAGGGATTCGGCCGAGGCAGGTATACACAAATACGGTGCAGTAGCTTGTGTGATTCGTGATGTGATCGGTCTGCTCGGTCTCATCGTTCAGGCAGGTTGATGACGGGCACCCACTGATCCAAACAGCGACTGTCTCTGCAGAAACGATTCAGCTTGTTCAAGGCTGGGTCTTTGCATGCAGACGACTGTGGTTTCTGCAAAGAATACAAATGGAAATTAATCACTGGGGTTTAAACAATTTGGACATTAAAgacactttcatttaaaaaaaaaaagaaaaagaaagaaatattttttcatatactGAGCCATCCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34432 True 865 lncRNA 0.41 2 17454285 17468157

Neighbor

gene id symbol gene type direction distance location
pbx1b pbx1,pbx1b,LOC108272157,LOC103479586 coding downstream 160280 17220584 ~ 17294005 (-)
LOC113536221 NA coding downstream 251036 17197989 ~ 17203249 (-)
med8 med8,LOC107690829,LOC107554872,LOC107708572 coding downstream 262826 17186645 ~ 17191459 (-)
szt2 szt2 coding downstream 284933 17066355 ~ 17169352 (-)
ptprfa ptprf,ptprfa,LOC107709086 coding downstream 621417 16625654 ~ 16832868 (-)
dr1 dr1,LOC107555385 coding upstream 62402 17530559 ~ 17539905 (-)
LOC113528309 NA coding upstream 75519 17543676 ~ 17547134 (-)
scinla LOC108272108,LOC108437692,LOC105895209,LOC107675434,LOC107730699,LOC107564434,LOC105011765 coding upstream 82779 17550936 ~ 17567323 (-)
si:ch73-389b16.1 LOC108271542,LOC108437695 coding upstream 109234 17577391 ~ 17579519 (-)
btbd8 LOC108271611 coding upstream 115494 17583651 ~ 17614589 (-)
G29174 NA non-coding downstream 20117 17433453 ~ 17434168 (-)
LOC113528975 NA non-coding downstream 24507 17423871 ~ 17429778 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding downstream 58086 17394766 ~ 17396199 (-)
G29167 LOC108272186 non-coding downstream 59818 17393458 ~ 17394467 (-)
G29119 NA non-coding downstream 399629 17054088 ~ 17054656 (-)
G29196 NA non-coding upstream 19204 17487361 ~ 17511455 (-)
G29213 NA non-coding upstream 169170 17637327 ~ 17638017 (-)
G29223 NA non-coding upstream 232604 17700761 ~ 17714365 (-)
G29237 NA non-coding upstream 316318 17784475 ~ 17842820 (-)
G29439 NA non-coding upstream 984311 18452468 ~ 18452976 (-)
G29158 NA other downstream 174112 17272955 ~ 17280173 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 1318570 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 1959076 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 1993284 15456635 ~ 15461001 (-)
G27843 NA other downstream 2155266 15297309 ~ 15299019 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 4173 17472330 ~ 17529315 (-)
G29263 NA other upstream 481000 17949157 ~ 17949718 (-)
G29279 NA other upstream 602830 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 680071 18148228 ~ 18195628 (-)
LOC113537624 NA other upstream 1325868 18794025 ~ 18816812 (-)

Expression


Co-expression Network