G29196


Basic Information

Item Value
gene id G29196
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17487361 ~ 17511455 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34457
GTCAAATAGCAGTTAGCATGGTTTATTCATGTGCTGTGACCTACCTGTGAGCTTGTGCGATCTGATGCAGAACAATGCTGCTCCCTAGAggagaaaacacaacagtgtacCAATATAGGAAAGTGACTAGGTCTTCATTGTTTGGTTGAAATGACTCAGATAAAGACACTATGCTACTTGTCTGGGTTTGAGTCATGTAGTGTGAATACTGTAAAGTTTCTACATACAAGGTTTCCTGCAGCTCCAGTGAAAGTGAGCTCATGTCTGACCTTTGTCCTCAATACTTAATacttcctctgagttttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34457 True 318 lncRNA 0.39 2 17487361 17511455

Neighbor

gene id symbol gene type direction distance location
sec16b sec16b coding downstream 24736 17438640 ~ 17462625 (-)
pbx1b pbx1,pbx1b,LOC108272157,LOC103479586 coding downstream 193356 17220584 ~ 17294005 (-)
LOC113536221 NA coding downstream 284112 17197989 ~ 17203249 (-)
med8 med8,LOC107690829,LOC107554872,LOC107708572 coding downstream 295902 17186645 ~ 17191459 (-)
szt2 szt2 coding downstream 318009 17066355 ~ 17169352 (-)
dr1 dr1,LOC107555385 coding upstream 19104 17530559 ~ 17539905 (-)
LOC113528309 NA coding upstream 32221 17543676 ~ 17547134 (-)
scinla LOC108272108,LOC108437692,LOC105895209,LOC107675434,LOC107730699,LOC107564434,LOC105011765 coding upstream 39481 17550936 ~ 17567323 (-)
si:ch73-389b16.1 LOC108271542,LOC108437695 coding upstream 65936 17577391 ~ 17579519 (-)
btbd8 LOC108271611 coding upstream 72196 17583651 ~ 17614589 (-)
G29176 NA non-coding downstream 19204 17454285 ~ 17468157 (-)
G29174 NA non-coding downstream 53193 17433453 ~ 17434168 (-)
LOC113528975 NA non-coding downstream 57583 17423871 ~ 17429778 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding downstream 91162 17394766 ~ 17396199 (-)
G29167 LOC108272186 non-coding downstream 92894 17393458 ~ 17394467 (-)
G29213 NA non-coding upstream 125872 17637327 ~ 17638017 (-)
G29223 NA non-coding upstream 189306 17700761 ~ 17714365 (-)
G29237 NA non-coding upstream 273020 17784475 ~ 17842820 (-)
G29439 NA non-coding upstream 941013 18452468 ~ 18452976 (-)
G29541 NA non-coding upstream 1102902 18614357 ~ 18614724 (-)
G29158 NA other downstream 207188 17272955 ~ 17280173 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 1351646 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 1992152 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 2026360 15456635 ~ 15461001 (-)
G27843 NA other downstream 2188342 15297309 ~ 15299019 (-)
G29263 NA other upstream 437702 17949157 ~ 17949718 (-)
G29279 NA other upstream 559532 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 636773 18148228 ~ 18195628 (-)
LOC113537624 NA other upstream 1282570 18794025 ~ 18816812 (-)
trnag-ucc NA other upstream 1304804 18816259 ~ 18816330 (-)

Expression


Co-expression Network