G29213


Basic Information

Item Value
gene id G29213
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17637327 ~ 17638017 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU34475
TAATTACTATCTCGCTGTCTATTGCTGTCTGTTGCAAGCAAGATTTTAATTACTATCTCGCTGTCTATTGCTATCTGTTGCAAGCAGTATGCAGCTAATGTAACTTCTTTGTGCAACCTACCTTGTTTCAGTGGCATCCAattttatccacaaagggccagtgtggctgcCGGTTTTCATTCCAATGAATCAGAAGCCACTGAAGTCAACTGAAGGCCAAAGTGATCTGATTAAAGAGGTGGAATCCTGATCGGCTGGAacgaaaacctgcagccacaccccCAACCTTTCCGGAAGAGATCAGACAATCTGCCTTATTTTATTCAATAATCTGTTTTACTGAGTGATGCTAGCTGTGTATGGTTAGCTGCTCCAGCAGTGACACATCTGTGTAATAATGAGAAGTCAGTTAAATTTATTGGAATTGGGTAGCTATTTGTGTAGCCAGCATTCTTCAGCATGTCCACACTGGAGTTTACACTCTTAAccacaaagggccggtgtggctgcaggctttcgtTCCAACTAAGCAGGAGTCATACctgatttcacttgtttaatcagtttaacTTTAATCAGTCTCTAATCAAACTATCACATGTGCCTCCTATTTGGCTGGactgaaagcctgcagccacaccagcaACACGCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34475 True 654 lncRNA 0.43 2 17637327 17638017

Neighbor

gene id symbol gene type direction distance location
ephx4 ephx4,LOC107749983,LOC107555389,LOC107564433,LOC107678348,LOC107730701,LOC107675432 coding downstream 5183 17618116 ~ 17632144 (-)
btbd8 LOC108271611 coding downstream 22738 17583651 ~ 17614589 (-)
si:ch73-389b16.1 LOC108271542,LOC108437695 coding downstream 57808 17577391 ~ 17579519 (-)
scinla LOC108272108,LOC108437692,LOC105895209,LOC107675434,LOC107730699,LOC107564434,LOC105011765 coding downstream 70004 17550936 ~ 17567323 (-)
LOC113528309 NA coding downstream 90193 17543676 ~ 17547134 (-)
LOC117599332 NA coding upstream 156621 17794638 ~ 17795351 (-)
znf326 znf326 coding upstream 445704 18083721 ~ 18090316 (-)
lrrc8db lrrc8db,LOC108272026,LOC108413222,LOC107730703,LOC107749977,LOC107564626,LOC107675437 coding upstream 456150 18094167 ~ 18106279 (-)
lrrc8c lrrc8c,LOC108272152,LOC108413226,LOC103030093,LOC107749978,LOC107593158,LOC107698887 coding upstream 478388 18116405 ~ 18126912 (-)
lmo4b lmo4,lmo4b,LOC103026253,LOC107593176 coding upstream 811240 18449257 ~ 18464571 (-)
G29196 NA non-coding downstream 125872 17487361 ~ 17511455 (-)
G29176 NA non-coding downstream 169170 17454285 ~ 17468157 (-)
G29174 NA non-coding downstream 203159 17433453 ~ 17434168 (-)
LOC113528975 NA non-coding downstream 207549 17423871 ~ 17429778 (-)
G29166 LOC108437688,LOC108272186,LOC103143039,LOC105011759,LOC105916686 non-coding downstream 241128 17394766 ~ 17396199 (-)
G29223 NA non-coding upstream 62744 17700761 ~ 17714365 (-)
G29237 NA non-coding upstream 146458 17784475 ~ 17842820 (-)
G29439 NA non-coding upstream 814451 18452468 ~ 18452976 (-)
G29541 NA non-coding upstream 976340 18614357 ~ 18614724 (-)
G29542 NA non-coding upstream 976852 18614869 ~ 18615874 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other downstream 108012 17472330 ~ 17529315 (-)
G29158 NA other downstream 357154 17272955 ~ 17280173 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 1501612 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 2142118 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 2176326 15456635 ~ 15461001 (-)
G29263 NA other upstream 311140 17949157 ~ 17949718 (-)
G29279 NA other upstream 432970 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 510211 18148228 ~ 18195628 (-)
LOC113537624 NA other upstream 1156008 18794025 ~ 18816812 (-)
trnag-ucc NA other upstream 1178242 18816259 ~ 18816330 (-)

Expression


Co-expression Network