G30270


Basic Information

Item Value
gene id G30270
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19984675 ~ 19985919 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU35735
atgtgcgcacacacatcaaaacagtgcaataagtaaggaatatgtacagcaaatagtgcaaaactAGGCATGTACAGCAAACAATGCcaacaaatatgaacaaatgaGAGATTAAAgcagaaattaaatgttaataaattaataaatattgagGTAGAAGTCCTTTGTTATTACACAATCAACCCTGAATCTTATGTGCTGAGAAATATTAGCTAATTAAGTTCAGTTCTTTGATGGCATGTGGATAAAAACTGTTCAAGAATCTGGAAGTGCTTATCGATAGCGTCTTCCAGAGGGTAGCAGAGTGAAAAGGTGATTACCGGGATGATTAATCAGTGTCAGGTGGCTTCTCTGTGTTGATTTCTTTGTGAAAAATCTTCTCTGATGTGCAAATTGCTGAACTCTACAACTTTTCTCAAGCTGGATGGGAAATGTACACTTATCAGCATCTGAAGGGCTTACACAGATTTCCTTAGACCTGCAAAatatgtatttcagaaacataCATATTGATTTATATTTGATTACCACCTTATTGCATTTTAGAGTTGTGATGTTACAGTGTTAAGGAGTAACAGAGATACAAGCACCTATGCTACAAGTTTTAGTTTCTAGTTTTACCTTTAAAGCAATTCAACTGGTCTGGAGTCATTGctgttaatatatttatgtgaCTATGGATAGGTTGTTAAATAGCAGAGACCTGATATTCCACATTCAAAGGAAAAACCCCATGATAATCGTCATCTCTCTGCTGTGCATATTAAAATGTTGCTGAAGTTCTAGTGGGTGGGGGAGTCAAATGCTCAATGGTGGTAGCTCAATTTCTGTTCTTTGGATGATATTTTTGGGGACTGGGGAATATGTAATGATTTCTGCCTGGTTCATAAGTACATACTTGCATTCAAAAGAGGGAACATAAAAGATACCTCTGCATGTAAGTCTTAGCAGATTTGCTTGTGTTGTTGAGTTTGCCTGCTTTGTGATAAGCCTTGCTGAACAGTGGCATTAAACTGCCACACAAGCCAGAagttggaaagaaaaaaaaatcattccagACTGCTGCATGTTTGCAAATCATTTGAGTGACTCCTATTTTAActataaatgctttaaatgaacACATTGCATTAAGGTGCTGCGCCCAACTCGTAAAGTCCTGAATGAAAACGTACTGCTGTACACAGGCCGTGCCCCTCGAGGTGAAATTGATCACTTGGAAACAGATGTTAAAAGAAGTGGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35735 True 1245 lncRNA 0.37 1 19984675 19985919

Neighbor

gene id symbol gene type direction distance location
tbc1d23 tbc1d23,LOC107574489 coding downstream 1378 19956717 ~ 19983297 (-)
bcl6aa bcl6 coding downstream 431982 19544152 ~ 19552693 (-)
trnap-ugg_1 NA coding downstream 604163 19380441 ~ 19380512 (-)
im:7152348 NA coding downstream 608511 19372430 ~ 19376164 (-)
zgc:103559 LOC108272278,LOC108427664,LOC107696750,LOC107752646,LOC107552265,LOC105898261,LOC107733245 coding downstream 1007738 18970308 ~ 18976937 (-)
tomm70a tomm70 coding upstream 105 19986024 ~ 19999160 (-)
gfi1ab LOC108271917 coding upstream 39935 20025854 ~ 20032781 (-)
evi5b evi5,LOC108427692 coding upstream 53031 20038950 ~ 20101198 (-)
dipk1ab fam69a,LOC108272054,LOC108427695,LOC103026455,LOC107590645,LOC107659006,LOC107566484 coding upstream 127026 20112945 ~ 20142257 (-)
zbtb11 zbtb11,LOC106576566 coding upstream 160466 20146385 ~ 20156159 (-)
G30255 NA non-coding downstream 60696 19923763 ~ 19923979 (-)
G30246 NA non-coding downstream 70724 19913653 ~ 19913951 (-)
G30236 NA non-coding downstream 97937 19885468 ~ 19886738 (-)
G30088 NA non-coding downstream 371073 19599498 ~ 19613602 (-)
G30085 NA non-coding downstream 400670 19583663 ~ 19584005 (-)
G30320 NA non-coding upstream 118333 20104252 ~ 20112518 (-)
LOC117599142 NA non-coding upstream 211301 20197220 ~ 20199516 (-)
G30412 NA non-coding upstream 213614 20199533 ~ 20207732 (-)
G30421 NA non-coding upstream 260686 20246605 ~ 20246871 (-)
G30422 NA non-coding upstream 261192 20247111 ~ 20247337 (-)
trnap-ugg NA other downstream 1167477 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 1167863 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 1168345 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 1789047 18148228 ~ 18195628 (-)
G29279 NA other downstream 1911766 18070987 ~ 18072909 (-)
glmnb LOC108272089 other upstream 17440 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 373803 20359722 ~ 20429325 (-)
lepr lepr other upstream 1295445 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 1463627 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 2586513 22572432 ~ 22581943 (-)

Expression


Co-expression Network