G30423


Basic Information

Item Value
gene id G30423
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20248166 ~ 20248509 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU35912
tatcacaccaccttgttctggattattttcctataacagcacacttttttttattggtttctTGGTACAGTACTCATACAGAGGCATTAAGGTTTGATCATGGCTAAGACATCTAGAAGTTTAACACCGTTTATACACTCACCCTGTGCTTGGATCCCAGTCTTCCCCACTGTTTGGATAGATCACCCAGCTCATGTCAGCTGACTTATGTGACTTGGCGGATTCGAGAAGAGGTTTCACTAGAGCAGGTGGGGAACAGTTCACCCCAACAGCAACCAGCTGAGGGGAGTTACTGGCCACCTGAACAGCCTTGGCAAACCTGTTGCCATCTGAAATACTCTGGG

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35912 True 344 lncRNA 0.46 1 20248166 20248509

Neighbor

gene id symbol gene type direction distance location
nme7 nme7,LOC107659027,LOC107731836,LOC107732015,LOC107692347,LOC107590639 coding downstream 2158 20207755 ~ 20246008 (-)
dpt dpt coding downstream 64872 20172128 ~ 20183294 (-)
zbtb11 zbtb11,LOC106576566 coding downstream 92007 20146385 ~ 20156159 (-)
dipk1ab fam69a,LOC108272054,LOC108427695,LOC103026455,LOC107590645,LOC107659006,LOC107566484 coding downstream 105909 20112945 ~ 20142257 (-)
evi5b evi5,LOC108427692 coding downstream 146968 20038950 ~ 20101198 (-)
LOC113534100 bivm,LOC107548643,LOC104949108 coding upstream 1606 20250115 ~ 20258553 (-)
tmem131 tmem131,LOC107659030 coding upstream 16804 20265313 ~ 20310226 (-)
mrpl47 mrpl47 coding upstream 76349 20324858 ~ 20328459 (-)
lrrc7 lrrc7,LOC107709201 coding upstream 435038 20683547 ~ 20814820 (-)
zgc:153311 LOC108271850 coding upstream 636016 20884525 ~ 20886833 (-)
G30422 NA non-coding downstream 829 20247111 ~ 20247337 (-)
G30421 NA non-coding downstream 1295 20246605 ~ 20246871 (-)
G30412 NA non-coding downstream 40434 20199533 ~ 20207732 (-)
LOC117599142 NA non-coding downstream 48650 20197220 ~ 20199516 (-)
G30320 NA non-coding downstream 135648 20104252 ~ 20112518 (-)
G30428 NA non-coding upstream 66329 20314838 ~ 20315511 (-)
G30507 NA non-coding upstream 155700 20404209 ~ 20404408 (-)
G30550 NA non-coding upstream 231603 20480112 ~ 20480726 (-)
G30551 NA non-coding upstream 232671 20481180 ~ 20482701 (-)
G30552 NA non-coding upstream 243975 20492484 ~ 20495517 (-)
glmnb LOC108272089 other downstream 234072 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 1430968 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 1431354 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 1431836 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 2052538 18148228 ~ 18195628 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 111213 20359722 ~ 20429325 (-)
lepr lepr other upstream 1032855 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 1201037 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 2323923 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 2333794 22582303 ~ 22593861 (-)

Expression


Co-expression Network