G30899


Basic Information

Item Value
gene id G30899
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20575961 ~ 20657383 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU36466
GGCAGTATACTCAGGGTTAAATACATGTTAAAATCTCAGTGTACAGTAAATTCTTTTAAGATTTGCATTGTGAATTTATGTCCTAAAATACACATTCACCTGaattttaaacaacattttcaaCCATGCCACTGTAAACCTCAAATTCATGTTCTCATAAACACCCTGATCAGCAGAAAACATCCAGGAATCCTTGAACCAAGATCATATTTTGTGCCAGGTCATCAGTCAAAACATCCATCGGTTTGTGCAGTTTAGAAGCTGGATAGTTGCATAAGTTAAATATTTTGATCCTATTCTAAGATCATAGggagtatacagtataatggggggaaaaaagattttgtggCTGTGGTTAATGTAGCTCAAGTACATGTCTAAGAAAAACTTAAAATCAACATAGGTTAACTAGAACAGAACCATCCAAAACATGCTTTTAGTACTAAAACGTGCAAAGTGTCGCTCCAAGTGATCGTACAcaagtgcattttatttatgcactgctatatgaaaaaaaaaaaatccaaacaaaatcCAAGTGTATGCATTAAAATCTTTTCCATTTATAAAGTCACCTGCCTTAAACATTAAGGAAGCTGTACCATATAATCTCCCAGTGAGGCCCTGGTTAGGCGTAGCACTTCTCCCTGAAATCTGGAAGCACAGAGCTCCAGAATCGAGTCTTAATGATGCTGGACCATCTCTGCCCACGCTCACAAGCGTGCCCTCTGAGAGTGGAGCATTTCCTATTTCAattcacccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>TU36467
TCAGATTCTCGATCCACAAAACTgatgttatgtttaaaaaaaaaaaaaaaagatacactaAGTGTGTTCATCACCAGACGTACTTGACTCTGTATAGAAATGACAGATGCTCATCCTGTGATGACATAAAGAAAGatgcattcataaaaaaaaaaaaacagtgtgtgattGGTTTATTAGCACTTCTTGTCTTTTGACAAATGGAATGAATCAGACCAGAATATTTACAAAGTCCCGTCAAAAATGTGTTAGAAAGCTGTGGTCCAACGGAAGCGAGTCAGTCTTTTAGAAAACAATCATCTCCGAGTGAGAATGAAAGTGAGAGCGGGATTCTGTGAGAACGCCCTCCAGTGGAGAAATAAAGGCTTGTGTTTGAGAGAGCCTCAGAGACCCTCTGTCCAGCTAAGAGTACCACTGTGTCTAAAGGACAGGGTTTACAAGCTTCTGCTGATTTTCAACAACAAACCAGGCATCTTAACAACTCTGGCTGAAAACGCAAAGGCGTATTCCAGCTCTTGTACTGATTACACACGTCTTATAAATACTATTGCTTTTAAAATCATGCACACCACGTGAGACAGGATTCACATGGAAGAGAGGGCAGAGGAGAATGAGCTGCTAGTGACTGCACTTGAAAAACCCACTCAGCCCAGGTACGTCTTCACTAAGGGCCatgaaaaaaaaccaaaaggaaaaaagggggggaaaaaaatggtttctCCGACTTCAGCCATCTCACAATTTCTCCTTGGCTGGCACCCAGATGTATGGTCCAGACTGATCTTCTATGATTTGTTTAACCTGGTTGTAGATCTCCTCCAGGGTGTCCCCTTGTACAATGGCTAggataaaagaaaagagagtgGGTATATCACACCCATGGGCAGGAATTGCAGTATGGTCTAAAGGTGCAAGTCTACAGACAaaaatataccaaaaaaaaaaaggaaaaatatttcttCTATATTATAAGTCAAAGAAAGCAGCAGGGATGATAGGACCAATGGAGACTATAGTGTAGggctgtatattgtatatttatagtatattgTATAGGGCTGGTTTCCTGGTCATATAAATATGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36466 False 799 lncRNA 0.36 2 20575961 20656520
TU36467 True 1085 lncRNA 0.40 2 20655352 20657383

Neighbor

gene id symbol gene type direction distance location
mrpl47 mrpl47 coding downstream 247502 20324858 ~ 20328459 (-)
tmem131 tmem131,LOC107659030 coding downstream 265735 20265313 ~ 20310226 (-)
LOC113534100 bivm,LOC107548643,LOC104949108 coding downstream 317408 20250115 ~ 20258553 (-)
nme7 nme7,LOC107659027,LOC107731836,LOC107732015,LOC107692347,LOC107590639 coding downstream 329953 20207755 ~ 20246008 (-)
dpt dpt coding downstream 392667 20172128 ~ 20183294 (-)
lrrc7 lrrc7,LOC107709201 coding upstream 26164 20683547 ~ 20814820 (-)
zgc:153311 LOC108271850 coding upstream 227142 20884525 ~ 20886833 (-)
lurap1 LOC108271563 coding upstream 306006 20963389 ~ 20978637 (-)
ttc4 ttc4,LOC107709194 coding upstream 332302 20989685 ~ 20994441 (-)
pars2 pars2 coding upstream 338705 20996088 ~ 20999389 (-)
G30879 NA non-coding downstream 27324 20507382 ~ 20548637 (-)
G30561 NA non-coding downstream 68609 20507152 ~ 20507352 (-)
G30552 NA non-coding downstream 80444 20492484 ~ 20495517 (-)
G30551 NA non-coding downstream 93260 20481180 ~ 20482701 (-)
G30550 NA non-coding downstream 95235 20480112 ~ 20480726 (-)
G31070 NA non-coding upstream 302789 20960172 ~ 20960391 (-)
G31094 NA non-coding upstream 405511 21062894 ~ 21065738 (-)
G31298 NA non-coding upstream 727026 21384409 ~ 21385276 (-)
G31454 NA non-coding upstream 732094 21389477 ~ 21412173 (-)
G31481 NA non-coding upstream 874865 21532248 ~ 21532459 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 146636 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 561867 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 1758763 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 1759149 18794025 ~ 18816812 (-)
lepr lepr other upstream 623981 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 792163 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 1915049 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 1924920 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 2564910 23222293 ~ 23225548 (-)

Expression


Co-expression Network