G31742


Basic Information

Item Value
gene id G31742
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22224385 ~ 22226660 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU37433
CTTTAATGTGCTGTTAGAGAGCTGTGATTTTGCTGTCAGAAACTGAgaatattaatttctttaaaaacagggATGCTGAAAGAGGTGGATGATGGGGCGGAGGCTGAAGCCATCAACCAGCTCCAGAACGTCCTCCTGGATGAGACAGTACAAAAGATCCACTTGCCTCTGGGTAAGTAAAGAACATAAATAGTAATATcccaaaaacatttcaattacaACGTTAAATAACATTCACACTGACAAACTGATGTACAGATTTGCAAAAGCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37433 True 274 lncRNA 0.59 2 22224385 22226660

Neighbor

gene id symbol gene type direction distance location
LOC117599932 NA coding downstream 24751 22157708 ~ 22199634 (-)
LOC113538524 NA coding downstream 74147 22144203 ~ 22150238 (-)
usp1 usp1 coding downstream 177927 22035213 ~ 22046458 (-)
angptl3 angptl3 coding downstream 227664 21993695 ~ 21996721 (-)
atg4c atg4c coding downstream 256176 21957535 ~ 21968209 (-)
mafaa mafa,mafaa,LOC107556987,LOC107591187 coding upstream 92475 22319135 ~ 22322050 (-)
zc3h3 zc3h3 coding upstream 100795 22327455 ~ 22390555 (-)
LOC117599264 zc3h3 coding upstream 163593 22390253 ~ 22392793 (-)
adcyap1r1b adcyap1r1b,LOC108271541,LOC108441855,LOC107731652,LOC107717143,LOC107692394 coding upstream 257432 22484092 ~ 22514058 (-)
LOC113538473 NA coding upstream 320594 22547254 ~ 22552299 (-)
LOC117599242 NA non-coding downstream 26717 22196594 ~ 22197668 (-)
LOC117599244 NA non-coding downstream 48645 22173351 ~ 22175740 (-)
LOC117596032 NA non-coding downstream 91687 22130425 ~ 22132698 (-)
G31681 NA non-coding downstream 119974 22104198 ~ 22104411 (-)
G31492 NA non-coding downstream 608710 21615321 ~ 21615675 (-)
G31755 NA non-coding upstream 89146 22315806 ~ 22316006 (-)
G31916 NA non-coding upstream 311663 22538323 ~ 22560608 (-)
G31934 NA non-coding upstream 338632 22565292 ~ 22568836 (-)
G32157 NA non-coding upstream 484553 22711213 ~ 22785690 (-)
LOC113538262 NA non-coding upstream 763787 22990447 ~ 22995189 (-)
raver2 raver2 other downstream 692957 21449546 ~ 21531428 (-)
lepr lepr other downstream 906562 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 1795060 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 2210291 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 3407187 18817127 ~ 18817198 (-)
ccdc17 ccdc17 other upstream 345772 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 355643 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 995633 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 1388794 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 3453430 25680090 ~ 25738817 (-)

Expression


Co-expression Network