G31934


Basic Information

Item Value
gene id G31934
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22565292 ~ 22568836 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU37647
GGCAAGGGATAACCAACAGTATGGATGTCACATGAACTGTAACATACCCAGGCGGCTCTCGATGACTTTGATGGAACTGCTGAAGTGCTGGATGGCCTGGCTGTACTGGCCTGTGTAGCTAAAGGTTGTGCCCAGCTGGTAATGAGTCTCTGCCAGCAGACGACTGTGAGGAGGAAGATGCTTCAGCTGTATGGCTAAGCACTCCTGGAAGTCCTCAAGTTTCAAGAAGATCTGTGCCGCCATTAGCTGGTCCTCTTTGCTTTCCTTTCTGCAAGCAAGACATTCATCTTATGTAATTGGTCATGCTCTGGAAAAATAAGTGTGGGGGTTCTACCTGCAAGCCTTGATACCTTTTGTAAATCACTTTAGCCACCTCCAACATCTCCCATGCTAACTGGAGATTTCCAacttcctcctcctcacccTCCTAAACGgggggagaggaaaaaaaaattaattcttgCATTTCATTAACACCCCCCTCAGAACACCCCCTGGATTAAATACAAACCTTATCTTCTGCATTGGCATCCGCTTCctcgtcatcatcgtcatcaccatcatcatcctcagcATCTAAACAGGTAGACACTGAATCAGTTGAAACTAGCAAATGCATCTTGCATGTTTGCATCGTCTGAAAAATCCACCATTACATTTCTATTGTGCAGATCCAAGAGCCTGTTTTGGCAAGAAAGGTTCACCAAGTGAAGGAAAAATTGCCACTGGAAACCCATTGCCTCTCCCATACACCCAAGTGCTCTGTATTCAACACCTCTACCTCCAGCATCTTCCTCCATAGGCTCTGCCTGTTCATTCCCACTCTGTTCTTCTGTGCTCTTAACAGCTTGCTCAGCATCCTCCTTTGCCTCTTTTGTAACTACAGCATCATCCTCTTTTGAGGAGACatctttctccatctcctccttaACATTTTCAGCAGTCTGCTCCTCACTTTTGAGGAGATTTTCTATGggtttatttccattttcaacACGTGCATCAGgcttctttccttcttcacCAGCTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTGACTTCTTGTTCCTCTTTATCCACTTTTGGCTCCCCCCCTTCCTGAGAACTCCTCTTCTCCTCAGACATAGCTTCATAAACCTGTTCACGGAGCTCATCTCTGGTTTTCTCTGTATTGTGGTGGAAACATTTAAGCTGGCAAGATACTTTGAACAGAAAAGATGTCAGGCAAAACAGACATCTTTTAACCAAGAATGACAGATGTTTGGTTTTAAACCCCAGGCTGTGCAAGATCTTACTAACAGAACCCCTATCTGCAACTACTCCAAATATTTGCAATACTGCATATATGCAATATGACCATTAGAATCTCAGGCCCTTCAGGATTCCTCCTTATCCCACCCCTTTCAAAATAAACCAATATTACTTCAAATTTCTCTCTTTACCACAAccattttgtgcatttgttcAGTTTGAAAGGGTTCCCAGGTCTGAATTATAAAAACAGCCCAGAAACCTAACTTTGCACTTTGGAAGTGAGAGTACACAAGTGTAGTCATCAGTCCATCAGTAATCcctgtgacagtgatgagaaatatcaaaatgtattcatattgaTAAAAATAAGTGACAAGTCTATACTCCGTGCCTGTAATGAATCTATATGCAACTAAAGTTATACAAATCACAAAACACTCATTAGAAATTACTGATAAATTGTAAATCTACTATTAAAAATAGTGGTTGGCAAAGCagctcatttttatgaataaacaggaaacacaaaGCATTGGAGCTGATCACTTTTTGTTTATCTCTCAAGCTGGCCTATATTGCAGGGTCACACTCAGTTGTAGCATGTATGGAAGAGGTGTCAACACCAGTAACAAACAATGCAAATCCCACTACACATTTACTTATGGGGGgaacccaaaacaaacattacttttataaCCACTAATGAAGCCCTGTTCCTTTAGATAATAGTAGATATACCACTACACCACAAATACAGAAAGATCTGGAGTTTCCACCAAAATACCCACCATCCAAATTATCTGCACTCTCAATCTTCGAGTCATTCTGCTTCTCGCCCTCCTCGGAGGACTCCTCCGGGACTCCCTCCAAAGCATTACCCAAGACGGAGTTCTCCATCCTGTTAGAGTACACCCACCAAGTGATAAATGGCTTGGCTTAAACAAGACATATTCAAGATCCAAAAGCAAGAAACTGTTCAGAGCATTACCTGGCAAGCTCCAGCAAGGACTTCCCACACAAGAAGAACGCCTCTCCACATTCGTCAGCGGTGTCGCCATATTTCTCAGCTCTGTGGCAATGGGGTGATTAAAACcgactgtaataaaatgtgttccTGTAGTGCTTCTATCCAGCTCAAAGCAGTCAAGAACAATTTGTTTCAATAAACACTTTTGAAGCAGCAGTAAAAAGTACTTGTgttcaattttcttttttgaaaacCTATAATTTGTAAAGCTGTACAAATTGTCCCATCAAAGATCAGACATTTTGGCCTGATCGCACAAGATACCACATAAGTGTAAATAACTGGTATTACCAGTTCCAGTGACACCAGTGTCACAAAGATAGATCAAAACTACAAAACAGCATTGGCCAATGAGATGGTGGCAAAGTTGAATTTGAACTATAAAGTCatgcattttaaacatgaaagatttcaacaactgcccttagacaaCTTTAAATTTGGAAAAGGTCTTTCATTCTTATCAGTACAGGGAGAGAGGTCTACATTCTAGTCCATGGTAACTTCACATACACTACAACTAAGCCAGACTTCAGGTTGTAATAAACCCATGCTACACGCATTATCCAACCGGCCTGAAAATATGACCAGTACACTAGGTCAGTCATACTCACAGCATGGCACAGGCCTCCTGAAACACGCTGACTGCAGACACAACATCTCCCATAACCAGGTGCCTGTTTCCAGTGCCAATCAACTTCTTTGCCTCTTCAGCCACATCTACAGA
>TU37648
GGCAAGGGATAACCAACAGTATGGATGTCACATGAACTGTAACATACCCAGGCGGCTCTCGATGACTTTGATGGAACTGCTGAAGTGCTGGATGGCCTGGCTGTACTGGCCTGTGTAGCTAAAGGTTGTGCCCAGCTGGTAATGAGTCTCTGCCAGCAGACGACTGTGAGGAGGAAGATGCTTCAGCTGTATGGCTAAGCACTCCTGGAAGTCCTCAAGTTTCAAGAAGATCTGTGCCGCCATTAGCTGGTCCTCTTTGCTTTCCTTTCTGCAAGCAAGACATTCATCTTATGTAATTGGTCATGCTCTGGAAAAATAAGTGTGGGGGTTCTACCTGCAAGCCTTGATACCTTTTGTAAATCACTTTAGCCACCTCCAACATCTCCCATGCTAACTGGAGATTTCCAacttcctcctcctcacccTCCTAAACGgggggagaggaaaaaaaaattaattcttgCATTTCATTAACACCCCCCTCAGAACACCCCCTGGATTAAATACAAACCTTATCTTCTGCATTGGCATCCGCTTCctcgtcatcatcgtcatcaccatcatcatcctcagcATCTAAACAGGTAGACACTGAATCAGTTGAAACTAGCAAATGCATCTTGCATGTTTGCATCGTCTGAAAAATCCACCATTACATTTCTATTGTGCAGATCCAAGAGCCTGTTTTGGCAAGAAAGGTTCACCAAGTGAAGGAAAAATTGCCACTGGAAACCCATTGCCTCTCCCATACACCCAAGTGCTCTGTATTCAACACCTCTACCTCCAGCATCTTCCTCCATAGGCTCTGCCTGTTCATTCCCACTCTGTTCTTCTGTGCTCTTAACAGCTTGCTCAGCATCCTCCTTTGCCTCTTTTGTAACTACAGCATCATCCTCTTTTGAGGAGACatctttctccatctcctccttaACATTTTCAGCAGTCTGCTCCTCACTTTTGAGGAGATTTTCTATGggtttatttccattttcaacACGTGCATCAGgcttctttccttcttcacCAGCTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTCTGTTCTTCCTTCTGTTCTTGTTCCTCTTTATCCACTTTTGGCTCCCCCCCTTCCTGAGAACTCCTCTTCTCCTCAGACATAGCTTCATAAACCTGTTCACGGAGCTCATCTCTGGTTTTCTCTGTATTGTGGTGGAAACATTTAAGCTGGCAAGATACTTTGAACAGAAAAGATGTCAGGCAAAACAGACATCTTTTAACCAAGAATGACAGATGTTTGGTTTTAAACCCCAGGCTGTGCAAGATCTTACTAACAGAACCCCTATCTGCAACTACTCCAAATATTTGCAATACTGCATATATGCAATATGACCATTAGAATCTCAGGCCCTTCAGGATTCCTCCTTATCCCACCCCTTTCAAAATAAACCAATATTACTTCAAATTTCTCTCTTTACCACAAccattttgtgcatttgttcAGTTTGAAAGGGTTCCCAGGTCTGAATTATAAAAACAGCCCAGAAACCTAACTTTGCACTTTGGAAGTGAGAGTACACAAGTGTAGTCATCAGTCCATCAGTAATCcctgtgacagtgatgagaaatatcaaaatgtattcatattgaTAAAAATAAGTGACAAGTCTATACTCCGTGCCTGTAATGAATCTATATGCAACTAAAGTTATACAAATCACAAAACACTCATTAGAAATTACTGATAAATTGTAAATCTACTATTAAAAATAGTGGTTGGCAAAGCagctcatttttatgaataaacaggaaacacaaaGCATTGGAGCTGATCACTTTTTGTTTATCTCTCAAGCTGGCCTATATTGCAGGGTCACACTCAGTTGTAGCATGTATGGAAGAGGTGTCAACACCAGTAACAAACAATGCAAATCCCACTACACATTTACTTATGGGGGgaacccaaaacaaacattacttttataaCCACTAATGAAGCCCTGTTCCTTTAGATAATAGTAGATATACCACTACACCACAAATACAGAAAGATCTGGAGTTTCCACCAAAATACCCACCATCCAAATTATCTGCACTCTCAATCTTCGAGTCATTCTGCTTCTCGCCCTCCTCGGAGGACTCCTCCGGGACTCCCTCCAAAGCATTACCCAAGACGGAGTTCTCCATCCTGTTAGAGTACACCCACCAAGTGATAAATGGCTTGGCTTAAACAAGACATATTCAAGATCCAAAAGCAAGAAACTGTTCAGAGCATTACCTGGCAAGCTCCAGCAAGGACTTCCCACACAAGAAGAACGCCTCTCCACATTCGTCAGCGGTGTCGCCATATTTCTCAGCTCTGTGGCAATGGGGTGATTAAAACcgactgtaataaaatgtgttccTGTAGTGCTTCTATCCAGCTCAAAGCAGTCAAGAACAATTTGTTTCAATAAACACTTTTGAAGCAGCAGTAAAAAGTACTTGTgttcaattttcttttttgaaaacCTATAATTTGTAAAGCTGTACAAATTGTCCCATCAAAGATCAGACATTTTGGCCTGATCGCACAAGATACCACATAAGTGTAAATAACTGGTATTACCAGTTCCAGTGACACCAGTGTCACAAAGATAGATCAAAACTACAAAACAGCATTGGCCAATGAGATGGTGGCAAAGTTGAATTTGAACTATAAAGTCatgcattttaaacatgaaagatttcaacaactgcccttagacaaCTTTAAATTTGGAAAAGGTCTTTCATTCTTATCAGTACAGGGAGAGAGGTCTACATTCTAGTCCATGGTAACTTCACATACACTACAACTAAGCCAGACTTCAGGTTGTAATAAACCCATGCTACACGCATTATCCAACCGGCCTGAAAATATGACCAGTACACTAGGTCAGTCATACTCACAGCATGGCACAGGCCTCCTGAAACACGCTGACTGCAGACACAACATCTCCCATAACCAGGTGCCTGTTTCCAGTGCCAATCAACTTCTTTGCCTCTTCAGCCACATCTACAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37647 True 3097 lncRNA 0.42 2 22565292 22568836
TU37648 False 3073 lncRNA 0.42 3 22565292 22568836

Neighbor

gene id symbol gene type direction distance location
LOC113538473 NA coding downstream 12993 22547254 ~ 22552299 (-)
adcyap1r1b adcyap1r1b,LOC108271541,LOC108441855,LOC107731652,LOC107717143,LOC107692394 coding downstream 51234 22484092 ~ 22514058 (-)
LOC117599264 zc3h3 coding downstream 172499 22390253 ~ 22392793 (-)
zc3h3 zc3h3 coding downstream 174737 22327455 ~ 22390555 (-)
mafaa mafa,mafaa,LOC107556987,LOC107591187 coding downstream 243242 22319135 ~ 22322050 (-)
pik3r3b pik3r3,pik3r3b,LOC107717145,LOC107692397,LOC107594617,LOC107675943,LOC106584012 coding upstream 204290 22773126 ~ 22964855 (-)
pomgnt1 pomgnt1 coding upstream 479750 23048586 ~ 23062081 (-)
prpf38a prpf38a,LOC107731643,LOC107684051 coding upstream 494691 23063527 ~ 23071529 (-)
mpl mpl coding upstream 517771 23086607 ~ 23095386 (-)
tie1 tie1,LOC107731644,LOC107684058 coding upstream 530117 23098953 ~ 23116279 (-)
G31916 NA non-coding downstream 4684 22538323 ~ 22560608 (-)
G31755 NA non-coding downstream 249286 22315806 ~ 22316006 (-)
G31742 NA non-coding downstream 338632 22224385 ~ 22226660 (-)
LOC117599242 NA non-coding downstream 367624 22196594 ~ 22197668 (-)
LOC117599244 NA non-coding downstream 389552 22173351 ~ 22175740 (-)
G32157 NA non-coding upstream 142377 22711213 ~ 22785690 (-)
LOC113538262 NA non-coding upstream 421611 22990447 ~ 22995189 (-)
G32244 NA non-coding upstream 473695 23042531 ~ 23042762 (-)
G32629 NA non-coding upstream 1109946 23678782 ~ 23683686 (-)
G32686 NA non-coding upstream 1451289 24020125 ~ 24020779 (-)
raver2 raver2 other downstream 1033864 21449546 ~ 21531428 (-)
lepr lepr other downstream 1247469 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 2135967 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 2551198 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 3748094 18817127 ~ 18817198 (-)
ccdc17 ccdc17 other upstream 3596 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 13467 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 653457 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 1046618 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 3111254 25680090 ~ 25738817 (-)

Expression


Co-expression Network