dmrt2b (LOC108271504)


Basic Information

Item Value
gene id dmrt2b
gene name LOC108271504
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23222293 ~ 23225548 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU38121
TTAAATACGGACACGTGGAGAAGATGAGCTCAAACTTTGGCACTTTGGAAGTTCATCCCTCATCTTAACGCCTTTAAGCGTCGTAGCGCGCAGTGAAAAGGCCGAAAAGATCCCCACCGACACTCAGTGACAGTTTTTCAGACCTGGACGCTTTATAATTTTGCAGCGTGACTCTACCGGGAGCTGCGAGCCTAATCACGGCTCAGCCTACATGCTCGCTAACGAGCAGCGAGTGGTGAGCGCGTTATCACTTTATCAATGGCCGCTAAACTGGGGACGGACAGTCAGCTGCAGCAGCACAGTGAGCT
>XM_026933500.2
catacacacatacacacacacaggtaaaacACTCTTCATGCATGTGTTAGTTGATAAGATGCCCATTTTCCAGTAGATGAGCAGTAAccagagaggagaggaggagttgGGTTTGAGCACCACAACCTGGGTGACGTTCTCAGTAACCTACGATGCCGGTTAAATACGGACACGTGGAGAAGATGAGCTCAAACTTTGGCACTTTGGAAGTTCATCCCTCATCTTAACGCCTTTAAGCGTCGTAGCGCGCAGTGAAAAGGCCGAAAAGATCCCCACCGACACTCAGTGACAGTTTTTCAGACCTGGACGCTTTATAATTTTGCAGCGTGACTCTACCGGGAGCTGCGAGCCTAATCACGGCTCAGCCTACATGCTCGCTAACGAGCAGCGAGTGGTGAGCGCGTTATCACTTTATCAATGGCCGCTAAACTGGGGACGGACAGTCAGCTGCAGCAGCACAGTGAGCTCGGCGCTGTGGAGGGAACAGACGCGCAGAGGACGCCGAGAGCGCAAAGAGCGCCCGTGCGCAGCCCGAAATGCGCGCGCTGCCGGAACCACGGCGTCGTGTCGCGTCTCAAGGGCCACAAGCGCGCGTGCCGCTGGCGGGAGTGCCGCTGCGCGAGCTGCGTGCTGGTGCTCGAGAGGCAGCGCGTGATGGCCGCGCAGGTCGCGCTCCGCAGACAGCAGGccggagagAGTAAGAAAACTCAGAGAAGTGCTCCTTTCCTGAGACGCCAAACCTGCCAGCGCTACACCAGAACACCTAGTCTCCTGGCCAAGAGTATACTAGAGGGATGTAAATCACCAGCGTCAGAGGACTGGCAGACGAGACTCCACTATCCTCCACTTAGTGTTAAGATGAGGAAAAGGAGGGCTTTTGCTGATAAAGAGCTGGAGAGTGTCATGCTGGAGCGAGagctcagacagagagagatggaagaggTGCGTAGAATTGTCCTCCTCCAGGCCGCTGTGTCTCCACGTCCCTCACCTTGCTTCTGTCCGCTGTCTGATACAGGCGTGCCAGGCTACATGCCCGTGTATAAGTCCAGTCCACTGGGGTTTGATTGTGATCTCCACTGCCACACACAGGAGTTCAAAACCAGGGCTGTAGAGCATTGTCCTAGGGAAATCCTCACAACACCGAATTTTTCTCCATCCCTAAAATCATGGGACGCCTGCAGTGGGACAGAGTTGTGTCTGGAATCTGTTCCTCTGCCCTCATTTCAAAGCTCACACTATTACTGTTGCAAAAGTGGAGGAAATACAGAGGCAGAAAGAGTCTCGGCTGACTCGTCTCACAGCACGCCGCagagtgctgctgctgctgacagACTGAATGTGACGTCAAAGCGAGACAGCACTCTTTTTCTGACCGAGGCAAAGGTGCTGTCACAGACTGAGCAGCCAGAAAAACACTGCAGGGCATCAGGGCTtgaatcactcacacacaaggaCTGGGCCACTAAACCCAACTCAATCAAGAATGGGAGGCCCTTACCTTTTTCTGTTGAGGCTTTGCTGATGAGATGATAAGAAGTATTCTCTGTAGAATCTTGGTTTTATAGATTTActgatttataattttttttcagattttgttttgATAGAGGAAACCATGCTGCAGGTGTTACTCTGAAACTGAATAATTAAGTTTAATACATCCTAATAATATGCCTTGGGTTGTATATTGTGTGCTAGTTAATTctaagtatatttttatttttatttattttattgttagtCATGTATTCATACAACAGCCTCTACGTTTACACctaagctttatttttccctgATTATATAATAACCATATATTTGTACTGGCTTATAAAGATACATAAAAGTACTAGTTTATATGGTTTTGATTTAAGTTAATGCACAGAGGATGGAATACCATTAAGGCACATGTACATCATTCAGTGAAATGCATAATGTTCATCTTTATGCATTTAAACAGAAGGAGTATCATTTTAatggtgtgtgattaaaaaatttttgtcaaaaaaaagtcCCTGGAATTTTACAGatatgacaaattaaaaaaaaaaaaaaaaaaaaagccctgagCTATCATTACCAAGAGAATATTTAATATGGCAGATttgatattaataaaacaagatGGTTTGTGTATAGATATGTATAGATTTTctttaacaatattaataatgttgtctatttctttaacaaaataaacctgtgaattgTCTTACA

Function

NR:

description
uncharacterized protein LOC110524750

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38121 False 308 lncRNA 0.52 1 23225082 23225389
XM_026933500.2 True 2217 mRNA 0.45 3 23222293 23225548

Neighbor

gene id symbol gene type direction distance location
fam183a fam183a coding downstream 28790 23190888 ~ 23193503 (-)
LOC113538427 tmem125,LOC108440199 coding downstream 43734 23168378 ~ 23178559 (-)
tie1 tie1,LOC107731644,LOC107684058 coding downstream 106014 23098953 ~ 23116279 (-)
mpl mpl coding downstream 126907 23086607 ~ 23095386 (-)
prpf38a prpf38a,LOC107731643,LOC107684051 coding downstream 150764 23063527 ~ 23071529 (-)
mier1a LOC108272166 coding upstream 241833 23467381 ~ 23477206 (-)
slc35d1a slc35d1,slc35d1a,LOC108272060,LOC108441641,LOC107724140,LOC107684099,LOC107758361 coding upstream 254475 23480023 ~ 23495491 (-)
LOC113538489 LOC108271594 coding upstream 271108 23496656 ~ 23503444 (-)
serbp1a serbp1,LOC108271890,LOC107594603,LOC107692416,LOC107758366 coding upstream 328702 23554250 ~ 23560790 (-)
hsd17b7 hsd17b7,LOC107724130 coding upstream 338816 23564364 ~ 23573359 (-)
G32244 NA non-coding downstream 179531 23042531 ~ 23042762 (-)
LOC113538262 NA non-coding downstream 227104 22990447 ~ 22995189 (-)
G32157 NA non-coding downstream 436603 22711213 ~ 22785690 (-)
G31934 NA non-coding downstream 653457 22565292 ~ 22568836 (-)
G31916 NA non-coding downstream 661685 22538323 ~ 22560608 (-)
G32629 NA non-coding upstream 453234 23678782 ~ 23683686 (-)
G32686 NA non-coding upstream 794577 24020125 ~ 24020779 (-)
G32777 NA non-coding upstream 992945 24218493 ~ 24218937 (-)
G32781 NA non-coding upstream 1033758 24259306 ~ 24259855 (-)
G32840 NA non-coding upstream 1257115 24482663 ~ 24482990 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 628432 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 640350 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 1690865 21449546 ~ 21531428 (-)
lepr lepr other downstream 1904470 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 2792968 20359722 ~ 20429325 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 389906 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 2454542 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 2675182 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 2855601 26081149 ~ 26105675 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 3405281 26630829 ~ 26638538 (-)

Expression


Co-expression Network