G32852 (LOC108271908)


Basic Information

Item Value
gene id G32852
gene name LOC108271908
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 24573182 ~ 24576092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU38731
CTGAGACGATGGTGCTTTAACTTCCTCGTGTGCTTCCTCTTTTTCAGGAGAGTTTATGATCTGTACGTTTTTTATGTCCACGAGCTGATCTTCCGATCGGTGTCTCTCGATGGCGTCTTTTGCGCCTCCGGCCAAATCCAAAATATCATCATAGTCGAAGCTTTTACAGTCGGAGAACTCTGACACCTCCTCCGTAAACACTTCGGGGGCGAGTTTGTCTCCTGCCTGCTGCAGGTACTTCTGATCCTCTGTAGTGGAACTGATCTGATCATCCATAGCGGAAACAGCTCTTCAAGATTACTCTCAGATATTCAGCGGAAATACCCGTTTCATAGTTTATTGTACATTAGCGAACTAACCATTCCAGCTgaaacagtcttttttttttttttttttttgaagttaagCCGGAAGTTACTCAAGTCGTCGGTGACAACGCAATACCAAGGGGAGGAGCTTTGTGTTCTATTCTTCCTCAAGGGGGCGTGGCTAACTGTTAAACGAGCCACTGTCGTCTTTTATTGCCCCAAGAAAGGGAAACATGTCCTGCTGATGAGCACCATGCACAAAGATGCTGTCCTGAGCACCAGAGAAGACAGGAAACCACAAATGGTCTTGGACTACAATAAGACTAAGGGGGGGGGTTGATAATCTGGACGAGGTCACAGCCACCTACAGCTGCCGATGCAAGACTGCCCAT

Function

NR:

description
PREDICTED: reticulon-1-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38731 True 700 lncRNA 0.47 2 24573182 24576092

Neighbor

gene id symbol gene type direction distance location
brinp3a.2 brinp3a.2,LOC108440126,LOC107711116,LOC108271609,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding downstream 191689 24330165 ~ 24381493 (-)
brinp3a.1 brinp3a.1,LOC108271581,LOC108441513,LOC107585174,LOC107711117,LOC107732447 coding downstream 443156 24077383 ~ 24130026 (-)
rgs8 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding downstream 654135 23902151 ~ 23919047 (-)
rgs16 LOC108271632,LOC108440142,LOC103040699 coding downstream 684716 23886767 ~ 23888466 (-)
rgs5a rgs5a,LOC108272128,LOC108441543,LOC107732440,LOC107564083,LOC107685321 coding downstream 706565 23852014 ~ 23866617 (-)
LOC113538330 pcdh9,LOC107582331 coding upstream 392458 24968550 ~ 25170260 (-)
pou4f1 pou4f1,LOC103143517,LOC107672640,LOC107709069 coding upstream 984698 25560790 ~ 25564089 (-)
obi1 rnf219 coding upstream 993929 25570021 ~ 25580542 (-)
rbm26 rbm26,LOC107672672,LOC107690205,LOC107746592 coding upstream 1085908 25662000 ~ 25674496 (-)
stradb stradb,LOC108271608,LOC106573852,LOC107582358,LOC107686750 coding upstream 1169291 25745383 ~ 25755348 (-)
G32840 NA non-coding downstream 90192 24482663 ~ 24482990 (-)
G32781 NA non-coding downstream 313327 24259306 ~ 24259855 (-)
G32777 NA non-coding downstream 354245 24218493 ~ 24218937 (-)
G32686 NA non-coding downstream 552403 24020125 ~ 24020779 (-)
G32629 NA non-coding downstream 889496 23678782 ~ 23683686 (-)
LOC117599215 NA non-coding upstream 132634 24708726 ~ 24723852 (-)
G32901 NA non-coding upstream 191716 24767808 ~ 24768010 (-)
LOC117599074 NA non-coding upstream 218455 24794547 ~ 24799425 (-)
G32923 NA non-coding upstream 248143 24824235 ~ 24824434 (-)
LOC113538494 NA non-coding upstream 630630 25206722 ~ 25240353 (-)
uap1 uap1,LOC107724142,LOC107551035 other downstream 941169 23615454 ~ 23632013 (-)
dmrt2b LOC108271504 other downstream 1347634 23222293 ~ 23225548 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 1979321 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 1991239 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 3041754 21449546 ~ 21531428 (-)
nbeal1 nbeal1 other upstream 1103998 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 1324638 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 1505057 26081149 ~ 26105675 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 2054737 26630829 ~ 26638538 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other upstream 2063741 26639833 ~ 26649379 (-)

Expression


Co-expression Network