sox14 (sox14,LOC103365676,LOC100695210)


Basic Information

Item Value
gene id sox14
gene name sox14,LOC103365676,LOC100695210
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18688598 ~ 18691082 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912723.2
GCCCTGCCGTTTATGTGCAGCCCAGCCTTTCAACTCCGCCGCCTTTTGGCTTCCATTCACGAGCTTTTTCTACTCATTTCCTAAGCCAGGTGCTTCGCAAAAGACGACAAACCTCCGAGAGggaagagaaaacacacacacgtacgcatacacacacgcacatacacacacacacacacgcagacagacacacacaaacacccagaGTTCACTCGTCGACCACGGGACTTTTTTGCCTCACCTCGGCGGATTTTTGGCAGCTGCACACTGGGTGTTGAAGAGGAAAGAAACATTTATAACCATTTGCTGAAACTCGTAAGAGTTGCGCGGTTGGATTTTTTCACCGATGCCTTTTTCACAGTTCTTCTCCGACTCTCCAGAAGTGGCATGATCGGCGTCCGTCAGCAAGACAGGTGAATTATTTCCTCCACTCGGTTTTGGTGGCATAAACATTTTGACGTTATTTTACTTGGACTGAACGGTGTGCGTGTCGCTTAACAAAGCCATGTCCAAGCCGGCCGATCACATCAAGAGACCCATGAACGCCTTCATGGTATGGTCCCGCGGCCAGAGGAGGAAAATGGCCCAAGAGAATCCCAAGATGCACAACTCTGAGATCAGCAAGAGGCTCGGTGCCGAGTGGAAGCTTCTCTCCGAGGCTGAGAAGCGGCCCTACATTGACGAGGCCAAGCGGCTGCGCGCGCAGCACATGAAAGAGCACCCGGACTACAAGTACCGGCCGCGGCGCAAGCCCAAGAACCTGCTCAAGAAGGACCGATATGTGTTCCCGCTGCCCTACTTGGGCGACGCTGAACACTTGAAAGCACTTCCGGTTTCCGGTGCCGACTCGTTGTTGGCTTCCGGGCCGGAAAAAGCTCGCGCGTTCTTGCCGCCGGCGGCCTCTGCACCCTACTCGTTCCTTGACCCAAGTCAGTTCGGCTCCAGCGCTGCGCAGAAGATGGCCGATATGCCACACGCTCTTGCCGCCGCCGCCGCTGGCTCGCTGCCCTACGCCTCCTCACTCGGCTACCAGAACGGCGCGTTTGGCGGCCTGGCGTGTCCggggcagcacacacacacccacccgtCACCCACCAACCCGGGCTATGTAGTGCCCTGCAACTGCACAGCGTGGTCAGCGGCGTCCAGCCTGCAGCCCCCCGTCGCCTACATCCTGTTTCCGGGCATGGGTAAGAGCGGCATCGACCCGTACCCCACAGCGCACGCCACGGCCATGTAAAATAACACCTAAAGTCGAGCAGAGGGACAGTTTTTACTTTGGAAACTTGAACCACGTAAAacacatactctcacacacgAAGTTACAAGAGCAAACAGACAGTCGGGCTCTCCGAAAACTTCTACCATGTTCAAACAAAAGACGTTTCTGCCTGGAAACTTTAACgatgtaaaataaatcagttaataaattaattaatagccACGCAGTTAGAGGGTGTTCAGCGCACAAGAAAACTCCACGGAACCTTCAGTGAGGTTACCCTccgaaaaaagagggaaaagacaactttttttttttttttggaaacttgaataatgttaaagaaaaaaaaacaacaggtcATATAAACAGTTGTAAAGCAGCCAAAAGCCGCTGCTGCTCTTTGAAAACTTGAAGCGCGTGAAGTGACCCAGGTGTCCCTGTCTGCAAGCCTGACCTCTGCTGCATCATGCCACCAGGCACAAGTGCAAAGCTCACTGTGTAGAGGCCGTGAGGACTTTCAGAACTGGAGAAAAACTTTCAGTGTTTTCATCATGCCCGTTTTTTCCCTCTGGACCTCTGCATGGGAACTTGGGAGTAGATGTGAGAGATCAAGGAGCCCTGAACtgtaagaaatgtaaatgttataacatttattaacgGCTATCCGATTAAGGATGcctttaactttatttattatgtacatttttgatgctatactaataataattttgtttcatgatattattattattgttatcttATTTTAAAGGCCCATTTGGTTTGCACAAGTGACACTCATCCTTCATATCTCTTGTATATTGTACTTATATTTTAGCACTCAGATAAACTGGCTTGGATCACGCTTAGAACTTTTTGAGTTGGATGAACATACGGGTTATATTGTTTATAGGCTATTTATCAAACCGGTGCATAAAATTAGACAACTATTTAAAAcatcaagtggaaaaaaaaaatatctttttaacatttttcttttctttttttttttttcaaattgtggTTCAGCGCTAGTCACGTTCAATTCATCTGAGGAAGAAGGAGCTGGAGTTTGAAGCGAAGCAGTTAATGTTGTGGttttattatgatgattattattatttttcaactGCGATGGTAATTTAAAAGCTGTACTAATGTTATGGAAAGGAAGATGTATCCAAATGGGTGATACCTCGATTCTTTGTTCATTTGCCTGAGCAAAGACATTTTGAATAAAGACAATCTGTCTTCAAAATTATA

Function

symbol description
sox14 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hypothalamus development. Predicted to be located in nucleus. Orthologous to human SOX14 (SRY-box transcription factor 14).

NR:

description
PREDICTED: transcription factor SOX-14

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021854 hypothalamus development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912723.2 True 2485 mRNA 0.47 1 18688598 18691082

Neighbor

gene id symbol gene type direction distance location
LOC113534471 LOC108271530,LOC108427638 coding downstream 64990 18615977 ~ 18623608 (-)
hs2st1b hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611 coding downstream 102372 18501538 ~ 18586226 (-)
trnae-cuc_6 NA coding downstream 111303 18577224 ~ 18577295 (-)
lmo4b lmo4,lmo4b,LOC103026253,LOC107593176 coding downstream 224027 18449257 ~ 18464571 (-)
lrrc8c lrrc8c,LOC108272152,LOC108413226,LOC103030093,LOC107749978,LOC107593158,LOC107698887 coding downstream 561686 18116405 ~ 18126912 (-)
hdlbpa hdlbp coding upstream 128975 18820057 ~ 18835789 (-)
stk25a stk25,stk25a,LOC108427658,LOC107733254,LOC107593165,LOC107694119 coding upstream 225543 18916625 ~ 18927201 (-)
dtymk dtymk,LOC107694123,LOC107593168,LOC107696762,LOC107552279 coding upstream 266691 18957773 ~ 18961671 (-)
agxta agxt,agxta,LOC108427662,LOC107552266,LOC107696749 coding upstream 273209 18964291 ~ 18969451 (-)
zgc:103559 LOC108272278,LOC108427664,LOC107696750,LOC107752646,LOC107552265,LOC105898261,LOC107733245 coding upstream 279226 18970308 ~ 18976937 (-)
G29551 NA non-coding downstream 54241 18634078 ~ 18634357 (-)
G29542 NA non-coding downstream 72724 18614869 ~ 18615874 (-)
G29541 NA non-coding downstream 73874 18614357 ~ 18614724 (-)
G29439 NA non-coding downstream 235622 18452468 ~ 18452976 (-)
G29237 NA non-coding downstream 845778 17784475 ~ 17842820 (-)
G29612 NA non-coding upstream 192902 18883984 ~ 18887011 (-)
G29614 farp2 non-coding upstream 199635 18890717 ~ 18895805 (-)
G29678 NA non-coding upstream 292980 18984062 ~ 19049735 (-)
G29793 NA non-coding upstream 567868 19258950 ~ 19259178 (-)
LOC117596148 NA non-coding upstream 692232 19383314 ~ 19385251 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 492970 18148228 ~ 18195628 (-)
G29279 NA other downstream 615689 18070987 ~ 18072909 (-)
G29263 NA other downstream 738880 17949157 ~ 17949718 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other downstream 1159283 17472330 ~ 17529315 (-)
G29158 NA other downstream 1408425 17272955 ~ 17280173 (-)
LOC113537624 NA other upstream 102943 18794025 ~ 18816812 (-)
trnag-ucc NA other upstream 125177 18816259 ~ 18816330 (-)
trnap-ugg NA other upstream 126045 18817127 ~ 18817198 (-)
glmnb LOC108272089 other upstream 1312277 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 1668640 20359722 ~ 20429325 (-)

Expression


Co-expression Network