gnat1 (LOC108271583,LOC108424115,LOC102793896,LOC108231337)


Basic Information

Item Value
gene id gnat1
gene name LOC108271583,LOC108424115,LOC102793896,LOC108231337
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 8569347 ~ 8574762 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912993.2
ACATTTCTATAAACACTGTTACTAAGACAGTAAGGCATAACGTATCTCATAGGCTCTCCTCAACTAGCCTCAATGTGCCTGAGAAGACAGTGTTCAGATTAGCACCATTTGCTGACCACATCATATTCTACCTAAATCTCAGGTGACCTGTTGTCAATCCCCCACCCAGTGTGTCTCTGTCCTTGTTCCTCATTGGCCATCCACCCCAGGTGGTCAACCACATCCTCAAAATCCAAAATCCCTCTAAGACATGAAACAACTGGTCAACTCACCATAGACAGGGAGCCAGTGTAGGTGAGAACTGCATAGTTGACCACACTTGGTGGGCCTTGGAGGCAAGTTAGTGGTTCTACATTCACACTAACTTTATAGTGAACATGGGGGCTGGGGCAAGCGCTGAGGAAAAACACTCCCGTGAGCTAGAGAAGAAGCTGAAGGAAGATGCTGACAAGGATGCCAGGACTGTCAAACTACTGTTACTAGGAGCTGGTGAGTCAGGGAAAAGCACAATTGTCAAACAGATGAAAATTATCCACAAAGATGGTTACTCCCTAGAAGAGTGCCTGGAGTTCATTTCTATCATCTACAGCAACACCTTGCAGTCGATCATGGCTATTGTAAAGGCTATGAACACGCTCAACATTAGCTACGGAGATGCTGCCCAGCAGGACAATGCCAGGAAGCTGATGCACTTAGCTGACACTATTGAAGAGGGCACCATGCCCAAGGAGCTGTCTGATATTATCCTGCAGTTGTGGAAAGATACTGGGATCCAAGCATGCTTCGACAGGGCCTCGGAATACCAGCTCAACGACTCTGCTGGATACTATTTAAATGATTTGGAAAGGTTGATCCAGCCTGGCTATGTCCCCACTGAGCAGGATGTACTGAGATCTCGAGTTAAGACAACTGGTATCATTGAGACCCAGTTTTCCTTCAAGGACCTCAACTTCAGGATGTTTGACGTAGGAGGCCAGCgctcagagagaaagaaatggatcCACTGCTTTGAAGGCGTTACCTGCATCATCTTCATTGCTGCTCTGAGTGCTTATGACATGGTGCTGGTGGAGGATGATGAAGTGAACCGAATGCACGAGAGTCTCCACTTGTTCAACAGTATCTGCAACCACCGCTACTTCGCTACTACTTCCATTGTACTCTTCCTCAACAAGAAAGATGTCTTCCTTGAGAAGATCAAGAAGGCCCATTTAAGCATGTGCTTCCCTGAATATGATGGACCAAACACATATGAAGATGCTGGTAACTACATCAAGGTGCAGTTCTTGGACCTGAACATGCGGCGAGACGTCAAAGAAATCTACTCGCACATGACTTGTGCTACAGACACTGAGAACGTGAAGTTTGTGTTCGATGCCGTAACAGACATTATCATCAAAGAAAACCTCAAGGACTGTGGTCTCTTTTAAGCACGTCCATGCCTGAGAAAAGGCATGGAGAGCACctatattttctctttctccaagATGACAAGTATTCTCAATTTCACAGAAACACCTAGAACCTATAAAGAGGAACTGGTATAtactgctgctaatgtcttttCTAATTCCAACTGAATACCATAGAAAGATGCTGCACAGTCACATGGTCCCACTAGTGTCTTACAGTAAAGGAATACAATTATAGCAGCATTTTATCAGCTGCACAATGAGACAGAAACGCTCTTTTGAAATGTTAGCTTCTCACAGATTACAGGAGTTTGGATTACGTGATTCAGCTCTTATAATTTCATGCAGTGTTCTATATCTTAGTCTCTGATTTTGGTGCATGGTATCTTTTAAAACACCTGCATATgcacttcattaaaaaaattcaatctaAAACATAGCTACATATGTTGTATTGCATGCAGCACATGTCATACTTATTGGCTTATAAGTATTTCCCATTTTCAGTGATGTACTTGAATGCAATGCCCATCGACCAGATTGACAAAAAGATGAGCTtcagatataaaatattatgttcTAATGACGCTTCGCTCATTAAGAACTGTTTCATATTACAGTGTAGTTTGAGCTGAGACATTGCGCTGGATATCTTTCCTTTTggctttataaaaataataatgaaacaatgTGAACAAGAGCATAAGAATGTATA
>XM_034312653.1
ATGAATGTTTCCACTACAGAATTATCCACAAAGATGGTTACTCCCTAGAAGAGTGCCTGGAGTTCATTTCTATCATCTACAGCAACACCTTGCAGTCGATCATGGCTATTGTAAAGGCTATGAACACGCTCAACATTAGCTACGGAGATGCTGCCCAGCAGGACAATGCCAGGAAGCTGATGCACTTAGCTGACACTATTGAAGAGGGCACCATGCCCAAGGAGCTGTCTGATATTATCCTGCAGTTGTGGAAAGATACTGGGATCCAAGCATGCTTCGACAGGGCCTCGGAATACCAGCTCAACGACTCTGCTGGATACTATTTAAATGATTTGGAAAGGTTGATCCAGCCTGGCTATGTCCCCACTGAGCAGGATGTACTGAGATCTCGAGTTAAGACAACTGGTATCATTGAGACCCAGTTTTCCTTCAAGGACCTCAACTTCAGGATGTTTGACGTAGGAGGCCAGCgctcagagagaaagaaatggatcCACTGCTTTGAAGGCGTTACCTGCATCATCTTCATTGCTGCTCTGAGTGCTTATGACATGGTGCTGGTGGAGGATGATGAAGTGAACCGAATGCACGAGAGTCTCCACTTGTTCAACAGTATCTGCAACCACCGCTACTTCGCTACTACTTCCATTGTACTCTTCCTCAACAAGAAAGATGTCTTCCTTGAGAAGATCAAGAAGGCCCATTTAAGCATGTGCTTCCCTGAATATGATGGACCAAACACATATGAAGATGCTGGTAACTACATCAAGGTGCAGTTCTTGGACCTGAACATGCGGCGAGACGTCAAAGAAATCTACTCGCACATGACTTGTGCTACAGACACTGAGAACGTGAAGTTTGTGTTCGATGCCGTAACAGACATTATCATCAAAGAAAACCTCAAGGACTGTGGTCTCTTTTAAGCACGTCCATGCCTGAGAAAAGGCATGGAGAGCACctatattttctctttctccaagATGACAAGTATTCTCAATTTCACAGAAACACCTAGAACCTATAAAGAGGAACTGGTATAtactgctgctaatgtcttttCTAATTCCAACTGAATACCATAGAAAGATGCTGCACAGTCACATGGTCCCACTAGTGTCTTACAGTAAAGGAATACAATTATAGCAGCATTTTATCAGCTGCACAATGAGACAGAAACGCTCTTTTGAAATGTTAGCTTCTCACAGATTACAGGAGTTTGGATTACGTGATTCAGCTCTTATAATTTCATGCAGTGTTCTATATCTTAGTCTCTGATTTTGGTGCATGGTATCTTTTAAAACACCTGCATATgcacttcattaaaaaaattcaatctaAAACATAGCTACATATGTTGTATTGCATGCAGCACATGTCATACTTATTGGCTTATAAGTATTTCCCATTTTCAGTGATGTACTTGAATGCAATGCCCATCGACCAGATTGACAAAAAGATGAGCTtcagatataaaatattatgttcTAATGACGCTTCGCTCATTAAGAACTGTTTCATATTACAGTGTAGTTTGAGCTGAGACATTGCGCTGGATATCTTTCCTTTTggctttataaaaataataatgaaacaatgTGAACAAGAGCATAAGAATGTATA

Function

NR:

description
PREDICTED: guanine nucleotide-binding protein G(t) subunit alpha-like

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
K04631 GNAT1_2; guanine nucleotide-binding protein G(t) subunit alpha 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912993.2 True 2127 mRNA 0.43 9 8569347 8574762
XM_034312653.1 False 1620 mRNA 0.41 8 8569347 8572830

Neighbor

gene id symbol gene type direction distance location
gpr27 gpr27 coding downstream 575724 7991214 ~ 7993623 (-)
gxylt2 gxylt2,LOC107666964,LOC106565732 coding downstream 747289 7788563 ~ 7822058 (-)
ppp4r2b ppp4r2,LOC102785172,LOC107667031 coding downstream 782898 7778190 ~ 7786449 (-)
chl1b chl1,LOC100380675 coding downstream 1198828 7282007 ~ 7370519 (-)
LOC113529215 LOC108271629,LOC108435695 coding downstream 1376206 7066318 ~ 7193141 (-)
inka1b LOC108271512,LOC108415076,LOC107723929,LOC107587643,LOC107708110,LOC107595459,LOC107666006 coding upstream 275220 8849982 ~ 8853110 (-)
gnai2b LOC108271854,LOC107587570,LOC103137272,LOC107723915,LOC103360398 coding upstream 285610 8860372 ~ 8915086 (-)
slc38a3b slc38a3,slc38a3b,LOC108271853,LOC108411719,LOC107666102,LOC107723914 coding upstream 347362 8922124 ~ 8953564 (-)
rbm5 rbm5,LOC108271979,LOC108433690,LOC107696464 coding upstream 398407 8973169 ~ 8982021 (-)
gnb1b gnb1b,gnb1,gnb1a,LOC108272010,LOC105895937,LOC107385217,LOC100703896 coding upstream 437914 9012676 ~ 9037333 (-)
LOC117599540 NA non-coding downstream 52488 8511307 ~ 8516859 (-)
G23643 NA non-coding downstream 79701 8489164 ~ 8489646 (-)
G23641 NA non-coding downstream 80589 8488514 ~ 8488758 (-)
G23621 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 non-coding downstream 133562 8432140 ~ 8435785 (-)
G23619 NA non-coding downstream 138653 8430480 ~ 8430694 (-)
G23758 NA non-coding upstream 117177 8691939 ~ 8692150 (-)
G23952 NA non-coding upstream 334457 8909219 ~ 8990207 (-)
G23973 NA non-coding upstream 429527 9004289 ~ 9004512 (-)
G23977 NA non-coding upstream 445307 9020069 ~ 9021558 (-)
G23991 NA non-coding upstream 495644 9070406 ~ 9070769 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 85166 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 217653 8343624 ~ 8351694 (-)
mitfa mitf,LOC108424034 other downstream 304118 8260485 ~ 8265229 (-)
G22591 NA other downstream 2089336 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 2360681 6205284 ~ 6208666 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 860744 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 1140754 9715516 ~ 9726051 (-)
G24516 NA other upstream 1288605 9863367 ~ 9868278 (-)
G24760 NA other upstream 1914531 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 2341280 10916042 ~ 10934164 (-)

Expression


Co-expression Network