tspan2a


Basic Information

Item Value
gene id tspan2a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13516180 ~ 13530635 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914240.2
GGGagcagtgggcggggcttacagCACGGTGTCGCACGCGCTCGGTGTGGCTCAGTGAAACATTTCCCGCATTTCTCTCTCGAGCTGGACATTAATCCTGCGGTTTTAACCAAGCGGAGGAGCCCCGAGGCGCAGAGAGCGGCAAAATGAGCAAAGTGCAAGGAGGCACGAAATGCATTAAATACCTGCTTTTCATCTTCAACTTCATATTCTGGCTTTCTGGTTCATTGGTGGTAGCAGTGGGACTGTGGCTGAGGTTTGATCCTAGCATCCTTTCATTACTGAAAGATAATGAGGCCCCCCAGACCATCTTTTTTGCTGTGTATATTTTGATCGGAGTAGGAGGAATCATGATGCTCGTGGGTTTCTTCGGGTGCTGTGGAGCCGTGAGGGAGTCGCAGTGTCTTCTGGGATTGTTCTTTTCCTGTCTGCTGATCATTTTTGGTGCAGAAGTGGCTGCAGGAATTTTTGGCTTCTTGAGCAAAGATCAGattattaaaCAGGTTAAAGACTTCTACACCACCTCCGCAGCTGGAAATGGCAACAGCACAGTCACTTCCATGTACCATGCTACTCTTGAGTGCTGTGGAGTCGAGAGAAAATCTAATACGTCGCTGTGTCCTGATAATAATAGCAAGGACTGCATCAAAGCCATAGAGGATTTTTTCAGTGAGAAACTCTTCATCATTGGATATGCGGGTATTGGCATTGCAGGAATCATGATAATTGGTATGATCTTCAGTATGGTTCTATGCTGTGGTATTCGGAGCAACAGGGAGGTCCTATAGATGCTCATAGGCCTCCTACTTAAGGCTGAACTGTCCTGAATCCCCTGTCCTGACCTCACTGAGCCATCACATTTGAAAGGCTCACATAAAATAGTGTAAGATATTGTTGCAGCTTTATAATaatcttttgtttctttgtttaattgtaTGTCTTTGTGCTGAATCACCACTGCATGGACTGAGAGTGTAACTGAATTAACATGAccttatattattttgtttatctgGGAGAGCAGTTACGATTACAGCCTGATTTTTATGATCAGTTTAGACATTACCAAACAGAGAAGCTTGGGCaacattctgtttttctccttctcctacTATGCATTACACAACTTTGGtaatgtaaatactgtatatatagaaaAGGTACTACTTGCTTTCTGTTGATGCCTTGGAATGTTATTTAGTAGCCCATGTTTGCTGTAGTAAAGTGTTTAGTTTAGGTTATGAGTAATGCTTTGTAAATGTTTAGGTGGTTTGTAAGTGATTCATGTTCACGCTGCCATATTTGCAAAAACATGATTCGAAGATGACTGCAACAGCACAGTATTGAGTGGTGAGGCATGAACATATACCACTCACACTTACCCAAAACCGAGAGGAATACATGTTGCTTGTAGTGCAGTGTGAAAACCCTTGCCCTTGTAAACTGTCAATCCTTTATAGTAATGTCTTAAATACTACCACCTACAGTACCCTTGCATTCTTCCATGAATGTGTCAGCACTGCCTCCATACTGTTAGTCAGAAGTTCTATATCAGTGAAACATTAAGCACAGCTTTGTGTGGGTAACAATTATAGTATCACAGTTCTTTAATCACACGAGCACAACTTGGGTGAACTGATACCTTGCTGTGCCTTTAATCACACATTCAGTATGGCACCTTCCTTTCCTACCTAAGCATGCTGTGAATGATAAAAATATGCCCTTGTATATATCATGAGTTTATATTTCTCCTAGAACATTTCTAACTTGCTTGGGTAATGCTTTGTTCTTTGAATACATGGTGGTATGGGTTTAGCCGGttgttaaaacacaaaaaaattatcaaTGAGTTCCACAGCATGTGTTTTGTAGCTATCTCTAAATATGGTTTATGActgctttgaaaaaaataaataaacggtaataaaaaaaaaaagcattgcttGTA

Function

NR:

description
tetraspanin-2-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06508 CD81, TAPA1, TSPAN28; CD81 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914240.2 True 1948 mRNA 0.41 8 13516180 13530635

Neighbor

gene id symbol gene type direction distance location
si:ch211-105j21.9 NA coding downstream 22921 13490194 ~ 13493259 (-)
ppm1j ppm1j,LOC108427592,LOC107666087,LOC107668166,LOC107729744,LOC107708158 coding downstream 264269 13234936 ~ 13251911 (-)
LOC113537313 NA coding downstream 277374 13238704 ~ 13238806 (-)
rhoca rhoc,LOC108427591,LOC103035456,LOC108271788,LOC105908082,LOC107729745,LOC107668165,LOC105902219 coding downstream 284440 13214941 ~ 13231740 (-)
capza1a capza1,LOC108271791,LOC103046653,LOC106566046,LOC105908306,LOC106582739 coding downstream 326631 13177828 ~ 13189549 (-)
ngfb ngf,ngfb,LOC103031633 coding upstream 2346 13532981 ~ 13544134 (-)
rplp2 NA coding upstream 96333 13626968 ~ 13629546 (-)
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding upstream 176819 13707454 ~ 13727074 (-)
LOC113533843 NA coding upstream 207908 13738543 ~ 13742560 (-)
cfap100 cfap100 coding upstream 500129 14030764 ~ 14044325 (-)
G26613 NA non-coding downstream 340021 13175077 ~ 13176159 (-)
G26610 NA non-coding downstream 346518 13169253 ~ 13169662 (-)
G26585 NA non-coding downstream 410094 13104457 ~ 13106086 (-)
G26570 NA non-coding downstream 445357 13070595 ~ 13070823 (-)
G26387 NA non-coding downstream 714947 12801007 ~ 12801233 (-)
G26970 NA non-coding upstream 116812 13647447 ~ 13694820 (-)
G26985 LOC108271615 non-coding upstream 153488 13684123 ~ 13685782 (-)
G27016 NA non-coding upstream 258158 13788793 ~ 13791366 (-)
G27043 NA non-coding upstream 305195 13835830 ~ 13836482 (-)
G27105 zxdc non-coding upstream 496667 14027302 ~ 14028884 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 14010 13493512 ~ 13502170 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 1752045 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 2030711 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 2582016 10916042 ~ 10934164 (-)
G24760 NA other downstream 3025885 10489293 ~ 10490295 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 101627 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 109746 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 334309 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 519766 14050401 ~ 14058445 (-)
pxmp4 pxmp4,LOC103464829 other upstream 1342313 14872948 ~ 14875990 (-)

Expression


Co-expression Network