angptl3 (angptl3)


Basic Information

Item Value
gene id angptl3
gene name angptl3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21993695 ~ 21996721 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916652.2
TTTTGCATTCTGTTGCTCAGACCACagggagagaggaaaagcaGGGGAAGCAAGGGAGAGAACCCAAGCAAGATCAGATAGTACCAACTAGCTGCAAAGTCAAAATGAACCTTGTCTGCTTGTTCTTCCTGGGGAGCATGTGCACCATTAATGCGGCCCATCGTTTGCAAACGGTCACAGAGACACCGTTTCTTCACAATGCACAACCGACAGAAGCAAAGTCGCGCTTCGCAATGCTGGATGATGTACGACTGTTGGCTAACGGTCTCCTCCAACTGGGGCAGAGCCTGCGAGAGTTTGTGCACAAGACCAAGGGGCAAATCAATGATATCTTCCAGAAGCTGAACATCTTCGACCGCTCTTTCTACCAGCTCTCCGTTGTGACCAGCGAAAtcaaagaggaggaagaggagctcAAAAAAACGACCTCGTTCCTCAAGTCCAACAACGAGGAAATCCGAAACATGTCGCTGGAGATCAACTCCAAGGTCAACAGTATTTTGCAGGAGCGCGGCCAGCTTCAGAGCCAAGTCGGGAATCTTGAGGAAAAGCTGCAAGGCCTGAGCCAAAGCGTAGTGCCCCTAGAACAGCTCCAGGAGATCGCCGCTCTGAAGGATGTGATCGACACTCAAGAGAAAACCATCAAAGACCTACTGAAGTCTGTAAGAGAACAGCATGAACAGCTCAACTCCCAGAAAAACAAACTCAAAAGCCTGGAGGAGAAGATCAATTATGACTCTCTTCAAGACACTGTTGAAAAAATTGCAGATTCAAACCAAGAAGCTCCAAACCTTCTCAACTATCTGACAAGTAACTCAACCAACTCAAGCACTAACACAAATGATCTTCCTGCAGACTGCAGTGAAGTGTTCAATAGAGGCCAGAGGAAGAGTGGAGTTTACCCAATCAAACCCAATCAATCCGAGCCATTCAACGTGTACTGCGAAATCAACTCAGAAAGAGCAGCCACAGTTATTCAACGGCGAGTGGATGGTACAGTGGACTTTGATCAGACCTGGGACAAATATGAGCTTGGATTTGGAAATCTGGAACATGAATTTTGGCTTGGCTTGGCAAAGATCTACTCCATTGCCAGACAAGGGGACTACATTCTCAGCATTGAGCTGGAGGACTGGAAGGATGAGAGGAGATTCATTGAGTACATTTTCACTTTGGATGGTCCTGCATCTCATTACACTATCCATCTGACTCATCTGTCTGGAAATCTACCTGATGCCATGAGCAACCACACTGGCATGATGTTCTCCACCAAAGATAAGGACAACGACAACCTGGATGAGTCCAGCTGTGCTCGCAATTACTCAGgtGGTTGGTGGTTTAACGCATGCGGTAGCACCAATCTAAACGGGCGCTACACGTGGATGCGGTCAAGGAATCGTACTCTGCGCAGGAAAGGGATCTACTGGAGACCTGGCAAGGGGAGCTCTTACACCCTCAAATTCACAAAGATCTCCATTAGGCCTTTGTCCCAGTTCCAGTGAACCTGACTAATCAGGCAACTCTCAACCAATCAAAATGTTCACACAGGCAGCAATGACTGTGGCCCCTTTCTCCTACACTCAGTCCAAAGGTGCTGACTTGTCATCGAAGCATGATGCAACAGGAACATTTCATCAACCTGACATTGAGCTTCAAATGTACAGATGTTGCATGTGTGGTCTTGCGACAGACTTTTACTTTTTGAATTATTTAGAAAATTGCTCATAGAGAATGCAAACAGAGCTGAATGCATTTTGAAAACTATATATTTGCAACTATATACTAAACACCCACAGAAATCAAACTAGTCTCACAACGCATCCATGTTAAATAGGTTTCACTTTCTTGTTTTTATACTACATTTTAACTTAATATCATATTTAAGccgtttttatgttttgtgctAGTCAAGAAACATGATGCTCTTTTATGTTACTGAGTCATATTGACTCCTGGTTACACAATGTACACAACCGTCCAGTAAATGTTCATTTACAGATTTGCCCTGAAAAACAGTTAAGGTGCACaatttttataacaaaataaatgaatccacCCAATAGCACAGA

Function

symbol description
angptl3 Predicted to enable signaling receptor binding activity. Acts upstream of or within hepatocyte proliferation and lipid metabolic process. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in liver; liver primordium; and yolk syncytial layer. Human ortholog(s) of this gene implicated in familial hypobetalipoproteinemia 2. Orthologous to human ANGPTL3 (angiopoietin like 3).

NR:

description
angiopoietin-related protein 3 isoform X1

GO: NA

KEGG:

id description
K22288 ANGPTL3; angiopoietin-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916652.2 True 2069 mRNA 0.45 7 21993695 21996721

Neighbor

gene id symbol gene type direction distance location
atg4c atg4c coding downstream 25486 21957535 ~ 21968209 (-)
foxd3 foxd3,foxd1 coding downstream 168221 21822742 ~ 21825474 (-)
alg6 alg6,LOC107704515 coding downstream 178016 21796560 ~ 21815679 (-)
pgm1 pgm1,LOC107591179,LOC107704513,LOC107731639,LOC107739071,LOC107692428 coding downstream 215745 21764915 ~ 21777950 (-)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177 coding downstream 237608 21634567 ~ 21756087 (-)
usp1 usp1 coding upstream 38492 22035213 ~ 22046458 (-)
LOC113538524 NA coding upstream 147482 22144203 ~ 22150238 (-)
LOC117599932 NA coding upstream 160987 22157708 ~ 22199634 (-)
mafaa mafa,mafaa,LOC107556987,LOC107591187 coding upstream 322414 22319135 ~ 22322050 (-)
zc3h3 zc3h3 coding upstream 330734 22327455 ~ 22390555 (-)
G31492 NA non-coding downstream 378020 21615321 ~ 21615675 (-)
G31486 NA non-coding downstream 380873 21569856 ~ 21612822 (-)
G31491 NA non-coding downstream 384528 21607396 ~ 21609167 (-)
G31489 NA non-coding downstream 389832 21602544 ~ 21603863 (-)
G31481 NA non-coding downstream 461236 21532248 ~ 21532459 (-)
G31681 NA non-coding upstream 107477 22104198 ~ 22104411 (-)
LOC117596032 NA non-coding upstream 133704 22130425 ~ 22132698 (-)
LOC117599244 NA non-coding upstream 176630 22173351 ~ 22175740 (-)
LOC117599242 NA non-coding upstream 199873 22196594 ~ 22197668 (-)
G31742 NA non-coding upstream 227664 22224385 ~ 22226660 (-)
raver2 raver2 other downstream 462267 21449546 ~ 21531428 (-)
lepr lepr other downstream 675872 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 1564370 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 1979601 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 3176497 18817127 ~ 18817198 (-)
ccdc17 ccdc17 other upstream 575711 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 585582 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 1225572 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 1618733 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 3683369 25680090 ~ 25738817 (-)

Expression


Co-expression Network