gata2b (gata2)


Basic Information

Item Value
gene id gata2b
gene name gata2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16202388 ~ 16209962 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917189.2
CATGACACACTGTACGGACAGAGGCTGAGAGGCTTGTAAAGCCAGGCGGAGACGCTGAACGATCCTGGAGTGAATAAAGAAGAGGTTTCTGTGAAGTGTCAGTTTCAGCGTTTCCCTCGGGGACACAGCCTGAGAGCTGGACCGAGGCTGGACATGGAGCTCTCCGCCGACTCCGCATGGATGATGTTGCCTACGTCCGACTCGGACGCTTCTCACGCTGGCTTGGGGCAGGGCACCGCGTACATGGAGCCATCATTACTGTCGCTGGAGGAAGTGGATGGATTCCTCAGTCACATTGATCCTCCAGGACATCCctatttccacacacacacacctcaccctCAAGCACGAACATCCTACAGCCAGGTTCCAGCTCGTTTGCACGGTGGCTCTGTGTGCCACCCTCAGTTTCTGCACGCGCAAGCTTACCCTTGGCTGGAGGGCAGTAAATCGAGTCCTTCCGTGCTCCAGCAACCCATCACCTGGTCACAGAGTCCTTTGGGAAAGCCTGGTGGAGGAACCTCGGTCGGGATCTCGTCGGTTTATCCAGGCGCGTGCGCTCATGGCTCGGCCCCGCTGGCCACGCGCTGCAGCACTCAGTTCTACTACCTGCCCCCTACACCGCCCACTGCCGCGGCTCCCGAGCCGGACGCCACCAAGTACCCGGCACTTCTTCTGGATGGGACGAAAATGCAGAGCACAGGCCCGCTCCGGAACTGTACAGCGCATGAGGCGGCTCCTGTGCGTGCGTTTCCAGCGTACGCGTTAACAGGAGCGCGCGAGCACGCGGCGGGAGACTTAACGGCCAAATCAAAGAGCAAAGGACGCACCGGATCGGaaggACGTGAGTGTGTGAACTGTGGGGCTACCTCCACTCCCTTGTGGCGGCGAGATGGCACAGGCCATTATTTGTGTAACGCATGTGGACTTTACCACAAGATGAATGGCCAGAACCGACCTCTCATCAGACCCAAACGTCGACTGtcagcAGCCAGGAGAGCAGGTACTTGCTGTGCAAACTGCCACACGGGCACCACCACATTGTGGAGACGTAACACCAATGGAGAGCCTGTTTGCAATGCCTGTGGCCTCTACTACAAACTGCACAATatGAACCGCCCGCTCACTATGAAGAAGGAAGGAATTCAGACTCGCAACAGAAAAATGTCCACCAAATCTAAACGAAGGAGAGGCGAGAGCTCTCATCAATTTCACTTCAGCAGATTCATGCAGGACAAACCACATGGCTTTAACCAAATCACCAATATTTCTCATCACGTTAACATGACTCCACCTGTCAAGTTTCATCCAGCCTTCAGCCACATGCACCATGCTAACTTGGTGACTGCCATGAGCTGAGCACCATGACGAGGTCTTTTTGTGCATTAATGAAATCgcagagacatttatttaagtgcttaatgaatatacagttttagaataatgtttttgtacattCACACATtgaagctagctaactaaatgaggttgttgtttttttaaaaaaaattatcattagTTGACTGTGTAATAAAGTGCACTTTATACCAAAACCCAGTGATATATTCTATGGAGGATTGTAAGATCCAAAGGTTTTTCTATGCAAACACTGCATTTGGTGGAGGATTCTTTTAGAAATCTTTTGAATCGCCCAGTCATAACATCTGAGTGTTGTACAAGAGATACAGAAGAAAACCTGGGGTTTTCAGAGCATGTAAGTGGTGAATGCTGAGACAGTGGGATTTTACAGTCCACTTTATGAAAGgactttgtgtgtctgtgtgtgtctgataaaACTGTGAATGTTGAACAGTGTAAAAAAAGTGTTGTGTTATTTGGTTTCTGATACTGCCCCACTTCCACCTCCACCCTTCCTCCATTAATGAGTtacaatcatgtgacagcaaaACCCTTTACTAAATTTTCTAGCAATAACACATTTATCAGTGTTCCAGCAATTCGATCTCCTTGT
>XM_034311370.1
CATGACACACTGTACGGACAGAGGCTGAGAGGCTTGTAAAGCCAGGCGGAGACGCTGAACGATCCTGGAGTGAATAAAGAAGAGGTTTCTGTGAAGTGTCAGTTTCAGCGTTTCCCTCGGGGACACAGCCTGAGAGCTGGACCGAGGCTGGACATGGAGCTCTCCGCCGACTCCGCATGGATGATGTTGCCTACGTCCGACTCGGACGCTTCTCACGCTGGCTTGGGGCAGGGCACCGCGTACATGGAGCCATCATTACTGTCGCTGGAGGAAGTGGATGGATTCCTCAGTCACATTGATCCTCCAGGACATCCctatttccacacacacacacctcaccctCAAGCACGAACATCCTACAGCCAGGTTCCAGCTCGTTTGCACGGTGGCTCTGTGTGCCACCCTCAGTTTCTGCACGCGCAAGCTTACCCTTGGCTGGAGGGCAGTAAATCGAGTCCTTCCGTGCTCCAGCAACCCATCACCTGGTCACAGAGTCCTTTGGGAAAGCCTGGTGGAGGAACCTCGGTCGGGATCTCGTCGGTTTATCCAGGCGCGTGCGCTCATGGCTCGGCCCCGCTGGCCACGCGCTGCAGCACTCAGTTCTACTACCTGCCCCCTACACCGCCCACTGCCGCGGCTCCCGAGCCGGACGCCACCAAGTACCCGGCACTTCTTCTGGATGGGACGAAAATGCAGAGCACAGGCCCGCTCCGGAACTGTACAGCGCATGAGGCGGCTCCTGTGCGTGCGTTTCCAGCGTACGCGTTAACAGGAGCGCGCGAGCACGCGGCGGGAGACTTAACGGCCAAATCAAAGAGCAAAGGACGCACCGGATCGGgACGTGAGTGTGTGAACTGTGGGGCTACCTCCACTCCCTTGTGGCGGCGAGATGGCACAGGCCATTATTTGTGTAACGCATGTGGACTTTACCACAAGATGAATGGCCAGAACCGACCTCTCATCAGACCCAAACGTCGACTGtcagcAGCCAGGAGAGCAGGTACTTGCTGTGCAAACTGCCACACGGGCACCACCACATTGTGGAGACGTAACACCAATGGAGAGCCTGTTTGCAATGCCTGTGGCCTCTACTACAAACTGCACAATatGAACCGCCCGCTCACTATGAAGAAGGAAGGAATTCAGACTCGCAACAGAAAAATGTCCACCAAATCTAAACGAAGGAGAGGCGAGAGCTCTCATCAATTTCACTTCAGCAGATTCATGCAGGACAAACCACATGGCTTTAACCAAATCACCAATATTTCTCATCACGTTAACATGACTCCACCTGTCAAGTTTCATCCAGCCTTCAGCCACATGCACCATGCTAACTTGGTGACTGCCATGAGCTGAGCACCATGACGAGGTCTTTTTGTGCATTAATGAAATCgcagagacatttatttaagtgcttaatgaatatacagttttagaataatgtttttgtacattCACACATtgaagctagctaactaaatgaggttgttgtttttttaaaaaaaattatcattagTTGACTGTGTAATAAAGTGCACTTTATACCAAAACCCAGTGATATATTCTATGGAGGATTGTAAGATCCAAAGGTTTTTCTATGCAAACACTGCATTTGGTGGAGGATTCTTTTAGAAATCTTTTGAATCGCCCAGTCATAACATCTGAGTGTTGTACAAGAGATACAGAAGAAAACCTGGGGTTTTCAGAGCATGTAAGTGGTGAATGCTGAGACAGTGGGATTTTACAGTCCACTTTATGAAAGgactttgtgtgtctgtgtgtgtctgataaaACTGTGAATGTTGAACAGTGTAAAAAAAGTGTTGTGTTATTTGGTTTCTGATACTGCCCCACTTCCACCTCCACCCTTCCTCCATTAATGAGTtacaatcatgtgacagcaaaACCCTTTACTAAATTTTCTAGCAATAACACATTTATCAGTGTTCCAGCAATTCGATCTCCTTGT

Function

symbol description
gata2 Enables several functions, including C2H2 zinc finger domain binding activity; DNA-binding transcription factor activity, RNA polymerase II-specific; and chromatin binding activity. Involved in several processes, including negative regulation of endothelial cell apoptotic process; positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis; and regulation of gene expression. Acts upstream of or within negative regulation of Notch signaling pathway; negative regulation of neural precursor cell proliferation; and positive regulation of angiogenesis. Located in cytoplasm and nucleoplasm. Implicated in acute myeloid leukemia; immunodeficiency 21; mental depression; myelodysplastic syndrome; and myeloid leukemia. Biomarker of acute myeloid leukemia; aplastic anemia; clear cell renal cell carcinoma; immunodeficiency 21; and myelodysplastic syndrome.

NR:

description
PREDICTED: GATA-binding factor 2-like isoform X2

GO: NA

KEGG:

id description
K17894 GATA2; GATA-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917189.2 True 1972 mRNA 0.50 5 16202388 16209962
XM_034311370.1 False 1969 mRNA 0.50 5 16202388 16209962

Neighbor

gene id symbol gene type direction distance location
ruvbl1 ruvbl1,LOC107721190,LOC107568195,LOC107667375,LOC107673590 coding downstream 14508 16182517 ~ 16187880 (-)
c2h1orf74 c11h1orf74 coding downstream 27276 16172670 ~ 16175112 (-)
patz1 patz1 coding downstream 82540 16106829 ~ 16119848 (-)
tgfa LOC108271731 coding downstream 118610 16074046 ~ 16083778 (-)
entpd8 entpd8 coding downstream 145701 16047993 ~ 16056687 (-)
si:ch211-157b11.8 LOC108271679 coding upstream 11203 16221165 ~ 16225200 (-)
slc26a6l LOC108271864,LOC108440479 coding upstream 61906 16271868 ~ 16281761 (-)
iho1 ccdc36 coding upstream 78209 16288171 ~ 16299906 (-)
rereb LOC108271943,LOC108440553,LOC107721179,LOC107584416 coding upstream 117909 16327871 ~ 16346280 (-)
eno1b eno1b,LOC108271510,LOC108440571,LOC107721178,LOC107568188,LOC107712086 coding upstream 136623 16346585 ~ 16354141 (-)
G28331 NA non-coding downstream 5521 16196574 ~ 16196867 (-)
G28325 NA non-coding downstream 20670 16181075 ~ 16181718 (-)
G28278 NA non-coding downstream 79439 16122729 ~ 16122949 (-)
G28256 NA non-coding downstream 156713 16035833 ~ 16045675 (-)
G28258 NA non-coding downstream 162595 16037983 ~ 16039793 (-)
G28376 NA non-coding upstream 48896 16258858 ~ 16259163 (-)
G28375 p4htm non-coding upstream 49474 16259436 ~ 16260312 (-)
G28383 NA non-coding upstream 53652 16263614 ~ 16264242 (-)
G28384 NA non-coding upstream 54962 16264924 ~ 16265160 (-)
G28385 NA non-coding upstream 56594 16266556 ~ 16266755 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 66673 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 707179 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 741387 15456635 ~ 15461001 (-)
G27843 NA other downstream 903369 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1326398 14872948 ~ 14875990 (-)
G29158 NA other upstream 1062993 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1262368 17472330 ~ 17529315 (-)
G29263 NA other upstream 1739195 17949157 ~ 17949718 (-)
G29279 NA other upstream 1861025 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1938266 18148228 ~ 18195628 (-)

Expression


Co-expression Network