pars2 (pars2)


Basic Information

Item Value
gene id pars2
gene name pars2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20996088 ~ 20999389 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918061.2
TTCCGGCGAAGAAGAAAGCGGTTTTATTTCAAAACGGCTGCATAGCAGACATAAAGTGCATTACATAGGAAGTAGAAGCCACTATttcataccctatgtagtgtacTTGTAAAGGCAGTAGTGAGAGGATTTGAACACAGCCTGTGTTTAGATGGTGCCGTCCATGCTGTCACGTCTTTGGAGTCTATTCAAACCTCTGCAGATTTTTTCTAAACAGAAGCGTTTGCCATGGAGGCATTGACGCACTTCTGTCGCCGCACAGCATGTGCCCTGCTGCCCAGATCACTGAGCAAAGCATCCAGAAGGAGTCATCACTGCCATCCACAAACGTCACAGTGCACAGCTCGTGTTTCCTCCAAACCAGTGACTCCAACACCTCTGGTATCACGGCTCTTCCAGCCTTCAAACCTCCGTGAAGGCCAGGACATGGGGGACATGACGTGCCGCAGCCAGAGACTGATGCTGCAGGCTGGTCTCATTCACAGCTCCAACCCAGGCTGCTTCTACTACCTTCCTGCTGCCCTGCGCTCCATGGAGAAGCTAGTGAGGCTCATTGATGAGGAAATGCAGGCCATTGGTGGGCAGAAAGTGGACATGCCAGCTCTGTGTGGAGCGGAGCTCTGGAAGCAGAGTGGGCGCTGGGAGCTCATGGGGAAGGAGATGTTCAGGCTGCGGGATCGACACAATGCGGAGTACTGTCTCGGCCCAACACACGAGGAGGCAGTCACAGAACTGCTGGCATCTCAGAGCACGTTGTCTTATAAACAGCTGCCACTGCTGCTTTACCAGGTCACCCGGAAATTTCGTGACGAGCAGAAGCCGAAGTTTGGATTGCTCCGAGGCCGAGAGTTCTACATGAAAGACATGTACTCATTTGACATCAGTGAGGAAGCTGCTCTCCACACCTACCACTCTGTGTGCCACGCCTACTCTCGTCTGTTTGACCGTCTTGGGCTGAGCTGGGTACAGGTGCAGGCTGCTACTGGCAATATTGGGGGAACGCTCTCACATGAGTTTCATCTGCCGGCTGATATAGGGGAAGACCGTCTGCTTATGTGTGGGAATTGTGGCTTCTCTGCTAACGTTGAAACCATGGAACCGGGTCAAACTGACTGCCCTCAGTGCCACACGACTCAGCTCACTGAGTCAAAAGGCATTGAACTGGGACATACCTTCTATCTTGGAACGAAATATTCCAAAGTGTTCAATGCCACGTTTGTTAATGCTCAGAACAAGCCTTCAGTGACAGAGATGGGCTGTTTTGGCCTCGGCGTTAATCGCATCCTTGCTGCATCTATTGAGGTGCTCTCCTCTGAGGAGTCCATTCGATGGCCTGGGCTACTCGCGCCGTATCAAGTTTGCATCCTTCCCCCTAAAAAGGGCAGCAAAGCCGGTGAAGCCATCCACTTGGCAGAAGAACTCGCCCAAAGTTTAGGAAACAGTTTACCAAATCTAAAAGGAGAGGTGGTTCTGGATGACAGAACCCAGTTGACCATTGGGAAGCGGCTAAAAGACGCTAACATGCTGGGTTACCCGTATGTGGTGGTGGTTGGGCATAAGGCCATGGAGGAGCAGCCTGTCTTTGAGGTGGTATGTCAGCATAGTGGGGAGACCATGTTCCTCAGTAAAGACGCCTTGCTGCACTTTTTGACTGGAGTCGAGACAATCTAACACATGGATTCTAAACTTGAATCCTGTACAGTTTCCAGCTTTCCATGCTTCAAGCATGAGCTGGATTAGGTGTGTTGGGAAAATCTAAAAGAAAATCTGTGAGCTAATATATCTGAGCCACTTTGGGGTGCATAACTTCATATGATCTGTAACATGAGGGAGCATTTAATACAGAAAGGTTTTTGGTATTGATATCATGGCAGTATGTATCAAATATGATGCTTCCCACTTGTACTGATAATGACCTTCTTTTAATAAAGCTGATCTGTTTATA
>XM_026918070.2
ATTCCGGCGAAGAAGAAAGCGGTTTTATTTCAAAACGGCTGCATAGCAGACATAAAGTGCATTACATAGGAAGTAGAAGCCACTATttcataccctatgtagtgtacTTGTAAAGGCAGTAGTGAGAGGATTTGAACACAGCCTGTGTTTAGATGGTGCCGTCCATGCTGTCACGTCTTTGGAGTCTATTCAAACCTCTGCAGGTATTactgaaaatgtcatttcttcTTTAGGTCAGTGTAGATAATCAAGAGCTGcagattgtttttatttattattattattatagacgATTTTTTCTAAACAGAAGCGTTTGCCATGGAGGCATTGACGCACTTCTGTCGCCGCACAGCATGTGCCCTGCTGCCCAGATCACTGAGCAAAGCATCCAGAAGGAGTCATCACTGCCATCCACAAACGTCACAGTGCACAGCTCGTGTTTCCTCCAAACCAGTGACTCCAACACCTCTGGTATCACGGCTCTTCCAGCCTTCAAACCTCCGTGAAGGCCAGGACATGGGGGACATGACGTGCCGCAGCCAGAGACTGATGCTGCAGGCTGGTCTCATTCACAGCTCCAACCCAGGCTGCTTCTACTACCTTCCTGCTGCCCTGCGCTCCATGGAGAAGCTAGTGAGGCTCATTGATGAGGAAATGCAGGCCATTGGTGGGCAGAAAGTGGACATGCCAGCTCTGTGTGGAGCGGAGCTCTGGAAGCAGAGTGGGCGCTGGGAGCTCATGGGGAAGGAGATGTTCAGGCTGCGGGATCGACACAATGCGGAGTACTGTCTCGGCCCAACACACGAGGAGGCAGTCACAGAACTGCTGGCATCTCAGAGCACGTTGTCTTATAAACAGCTGCCACTGCTGCTTTACCAGGTCACCCGGAAATTTCGTGACGAGCAGAAGCCGAAGTTTGGATTGCTCCGAGGCCGAGAGTTCTACATGAAAGACATGTACTCATTTGACATCAGTGAGGAAGCTGCTCTCCACACCTACCACTCTGTGTGCCACGCCTACTCTCGTCTGTTTGACCGTCTTGGGCTGAGCTGGGTACAGGTGCAGGCTGCTACTGGCAATATTGGGGGAACGCTCTCACATGAGTTTCATCTGCCGGCTGATATAGGGGAAGACCGTCTGCTTATGTGTGGGAATTGTGGCTTCTCTGCTAACGTTGAAACCATGGAACCGGGTCAAACTGACTGCCCTCAGTGCCACACGACTCAGCTCACTGAGTCAAAAGGCATTGAACTGGGACATACCTTCTATCTTGGAACGAAATATTCCAAAGTGTTCAATGCCACGTTTGTTAATGCTCAGAACAAGCCTTCAGTGACAGAGATGGGCTGTTTTGGCCTCGGCGTTAATCGCATCCTTGCTGCATCTATTGAGGTGCTCTCCTCTGAGGAGTCCATTCGATGGCCTGGGCTACTCGCGCCGTATCAAGTTTGCATCCTTCCCCCTAAAAAGGGCAGCAAAGCCGGTGAAGCCATCCACTTGGCAGAAGAACTCGCCCAAAGTTTAGGAAACAGTTTACCAAATCTAAAAGGAGAGGTGGTTCTGGATGACAGAACCCAGTTGACCATTGGGAAGCGGCTAAAAGACGCTAACATGCTGGGTTACCCGTATGTGGTGGTGGTTGGGCATAAGGCCATGGAGGAGCAGCCTGTCTTTGAGGTGGTATGTCAGCATAGTGGGGAGACCATGTTCCTCAGTAAAGACGCCTTGCTGCACTTTTTGACTGGAGTCGAGACAATCTAACACATGGATTCTAAACTTGAATCCTGTACAGTTTCCAGCTTTCCATGCTTCAAGCATGAGCTGGATTAGGTGTGTTGGGAAAATCTAAAAGAAAATCTGTGAGCTAATATATCTGAGCCACTTTGGGGTGCATAACTTCATATGATCTGTAACATGAGGGAGCATTTAATACAGAAAGGTTTTTGGTATTGATATCATGGCAGTATGTATCAAATATGATGCTTCCCACTTGTACTGATAATGACCTTCTTTTAATAAAGCTGATCTGTTTATA

Function

symbol description
pars2 Predicted to enable proline-tRNA ligase activity. Predicted to be involved in prolyl-tRNA aminoacylation. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 75. Orthologous to human PARS2 (prolyl-tRNA synthetase 2, mitochondrial).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006433 prolyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004827 proline-tRNA ligase activity molecular_function

KEGG:

id description
K01881 PARS, proS; prolyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918061.2 False 1945 mRNA 0.49 3 20996088 20999388
XM_026918070.2 True 2035 mRNA 0.48 3 20996088 20999389

Neighbor

gene id symbol gene type direction distance location
ttc4 ttc4,LOC107709194 coding downstream 1647 20989685 ~ 20994441 (-)
lurap1 LOC108271563 coding downstream 17451 20963389 ~ 20978637 (-)
zgc:153311 LOC108271850 coding downstream 109255 20884525 ~ 20886833 (-)
lrrc7 lrrc7,LOC107709201 coding downstream 181268 20683547 ~ 20814820 (-)
mrpl47 mrpl47 coding downstream 667629 20324858 ~ 20328459 (-)
sgip1a sgip1 coding upstream 18537 21017926 ~ 21084763 (-)
pde4ba pde4b,pde4ba,LOC108443455,LOC107692372,LOC107659050,LOC107591166,LOC105913193 coding upstream 112816 21112205 ~ 21262115 (-)
dnajc6 dnajc6 coding upstream 343320 21342709 ~ 21378774 (-)
ak4 ak4,LOC107590615,LOC107659053,LOC107692375,LOC107591174 coding upstream 387521 21386910 ~ 21400928 (-)
cachd1 cachd1,LOC107692379,LOC107556548 coding upstream 539610 21538999 ~ 21579079 (-)
G31070 NA non-coding downstream 35697 20960172 ~ 20960391 (-)
G30899 NA non-coding downstream 338705 20575961 ~ 20657383 (-)
G30879 NA non-coding downstream 447451 20507382 ~ 20548637 (-)
G30561 NA non-coding downstream 488736 20507152 ~ 20507352 (-)
G30552 NA non-coding downstream 500571 20492484 ~ 20495517 (-)
G31094 NA non-coding upstream 63505 21062894 ~ 21065738 (-)
G31298 NA non-coding upstream 385020 21384409 ~ 21385276 (-)
G31454 NA non-coding upstream 390088 21389477 ~ 21412173 (-)
G31481 NA non-coding upstream 532859 21532248 ~ 21532459 (-)
G31486 NA non-coding upstream 570467 21569856 ~ 21612822 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 566763 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 981994 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 2178890 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 2179276 18794025 ~ 18816812 (-)
lepr lepr other upstream 281975 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 450157 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 1573043 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 1582914 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 2222904 23222293 ~ 23225548 (-)

Expression


Co-expression Network