LOC113529215 (LOC108271629,LOC108435695)


Basic Information

Item Value
gene id LOC113529215
gene name LOC108271629,LOC108435695
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 7066318 ~ 7193141 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918266.2
TACACTCTGTCAGAAAGACCACGGCGACTATTCGGACATCAGATTTCTCCTTTGCAGCTTGGCGCAGTCCGATCGCAGGAACGGACCATCGTTTAAAAGATAACAGAAGCTGATGTGCACACTAGAACATCGCTCAAGTATTTTGGACGGGCAATAAAACTGAAAGTGTGGCTTTggatgatgaagatgacgaTTTTACTATCACGCGTGGCGCTAACCCTGCTGTCACTCAAATGCTACCTTGCAGAGAGAAATATTCAACATGGACCTGTTTTCACCCAAGAGCCTAGTGACAGTGTTTTCCCGCTGAGCAGTGAAGACAACAAGATATTCATCAACTGCAAAGCCAAAGGAAATCCGCCGCCGCATTACAGGTGGAAATTCAATGGAAGAGATCTCAACGTTTACAGTGATTTGAACTACAGCCTGGTAGAGGGCAACCTCTTGATCAATAACCCGCAGGCGATGAAAGACGGAGGATCTTACCAGTGTATTGCCACTAATGCCTTTGGAACCATCCTAAGCCGCAAGGCCAAAGTGGACTTTGCCTATCTTCAGAATTTCACCAACAAGGCCAGAAATGCAGTCTTGGTGAGAGAAGGCCAGGCTGTGGTGCTGCTGTGTGGCCCACCACCCCATTTTGGAGAGATTAGATATGCATGGATCTACAATGGCCATCCCAGTGTCCTCATCCAAGACAATCGGCGCTTTGTGTCCCAGAGGACAGGGAACCTGTACATTGCTAAAGTGGAGCCGTCTGATGTGGGCAACTATACATGTGTGGTAAAGAACATGATGACCAATGGCACCGTGTACAGCTCACCCACTCCTTTGGTGCTGCGCCGGGATGCTGTGATGGGTGAATACGAGCCTAAAATTGAAGTCCAGTTTGAAGAACTGCTGCGTGTCATCAAAGGATCATCGGTTAGACTGGAGTGCTTCGCTTTAGGAAATCCAGTGCCTTCTATCTCTTGGAGAAGAGCAGACGGAAGCCCTTTTCCTGGAAAGatgaaaatcaatcaatcaaatggCGTCCTGGAGATCCCTTATTTCCGGCCTGAGGATGCTGGCTTTTATGAATGTGTGGCAGAGAACTCCAGAGGCCGTAGTGTTGCAAAAGGACACCTCATATTTAATGatgtggaacatctgcattGGGCCCAGACACTGCGTGATGCCTACATGGCCATCGGTGCTGATCTGCACTGGGAGTGCAGGGCTAACGGGAAACCCCAGCCAGTGTACAGATGGCTTAAGAATGGACAGGCCATCGTGTCCGAGGACAGAATCCGCATTAATGGAGGCAAGTTAATGCTCTCTAAAGTTAACCTAGAGGATTCTGGGATGTATCAGTGTTTGGCAGAGAATGAGCATGGTGTCGTTTATGCCAGCGCTGAACTCAAAGTTGTAGCTTCTCCTCCAGACTTTTCTAAAGGTCCAGTGAAGAAGTCCACATTGGTTCAAAGAGGAGGTGAAATCGTCATTGAGTGCCGGCCACATGCATCTCCCAAGGCCTCCATCACATGGAGGAAAGAAGGCGAGGTGCTGAAGAACAGTGAGAGAAGGACAATCTCGGAGGACGGCACCCTGAGGATTACCAATGTGAGTGAGTCAGACGCAGGTAGATACACGTGCATGGCGCACAACCTGTTTGGCGTGGCCAGCAGCACGGGAACACTGGTGGTCAAAGaaccaACCAAAATTACAGTTCCTCCACTGAGCATGGATGCCACAGTGGGTGAGAGCATTGTTCTGCCATGCAGGGTGTCCAGAGACTCCAACATGGACTTCATCTTCAAGTGGTTCTTCAATGGGAAACTTGTCGATTTCAGCCGCCACGAACACTTTGAGATGATTGGAGGGGGAGCATCTGGTGACCTCATGGTACGTAACGTTCAGCTAAAACACTCTGGGAAATATGTCTGCATGATCCATACAGCGATGGACAGTGTCTCAGCTGCAGCTGATTTGATTGTCAGAGGGCCCCCTGGTTGCCCTGACCAAGTTTTGGTGGGGGAAGTCACTGACCGGACAGTTCAGCTCTCATGGAGTCCCAGTCCTGACAATCACAGCCCCATCACACATTACATAGTGCAGTCCCGAAGTGATTTCTCTATTGGTTGGCAGGCTGTAAAAACAGTTCCTGATTCTGTGCCTGGACAGATGACACATGCCATTGCAGTGGGTCTGAGCCCGTGGGTTCAGTATGAGTTTAGGGTGGCAGCCATGAACAGTGTTGGCATGGGTGAGCCCAGTGCCCCATCTGAGGCTGTTCTCACTAAGGCAGCAGtTCCTGAGGTTGCTCCAGCCAATGTGAGTGGAGGTGGTGGGAGCCGTGGCGAACTGGTGATTGTGTGGGAGCCTGTTCCAGAAGAACTACAGAACGGAGATGAATTTGGATATGTGGTAGCCTTTCGTTTACTTGGTTCTCTGGTCTGGATGCAAAGCGTGGTGCCCTCGGTGGATGCATCCCgatatgtgtttaaaaatgacagCTTTCCTCCACTCTCACGGTTCGAGGTGAAGGTGGGAGTTTACAACAGCATTGGAGAAGGACCCTATAGCCCTGTATCGGTTATCTACTCAGCGGAGGAAGAGCCCTCTATAGCCCCTACCAAAGTGTGGGCACATAGTCTTTCCTCCTCAGAACTGCAGGTTTTCTGGGATCCCATTCTGCCAAGCCATAGCAAATCCACAATCTCAGGGTACGAGGTGCTGTTGTGGGAGGAGGGCTCATTAGAGAGCAAGGCAATGAAGGAAAGGGTCATAAGAAGCCCAGCTCATATCACAGGCCTGAAGGGTGGCACTCTGTATCTAATCTCAGTCAGAGCTCACAACAGTGGTGGAGTTGGACCTGCCAGTGCTGCCATCAACATGACTACAAAGAAGCCACctcCAAGTCAGCCTCCAGGGAAGATTGAATGGAACTTGACAAACTCCAAGATTTTTTTGCAATGGCAGCAAGTAAAGGCAATGGACAATGAATCTGAAGTAACAGGCTACAAGGTGATGTACCATCAAAACTGGCACAAAGGCACCAGCATAGTGGAAACAAATCAGACATCATTGGAGCTACAGGTTCCAGCAGGAGAAGATCTGCTTATACAGATCAAAGCCTTGAGCGATGGAGGAGACGGCAGCTACAGCAGTCCAATTCATATACCAAAGATGTCCAaTCTGAACTCAAGGGGCTACTTCAGCTCTGATGCAAACAAGATGGTCCATGTCCATGAAGTAGCATTTCTTATGCTATCATGGCTGCTTCTGTAGAATTTTTCCCCTTGATTAGCACAAGCTGAAAAGAAAATCAAGCGTTGAATACTGTTTAAGATGAAAATACACTATGTGgaagtaatttatttatgtcaTAAGCCCAACAATgttgagagagacacacagcccaatatttgtttttaattattgaaGAACTTATGCTTTATCTGTTTAGTTTTATGCAAAAGGGTGAACTGTTGGAGTGTGATTAGGTTTTATTTGTCAGTTTCAACACTTGAGAAAACTTAAAACTCACTTCTACTTTGAAATGTAGTATATTTTGACCTGAAAACAGCATTCAAGAGAAGCAGTCTCCTGGCTCTTCATTAGACTCCTGCTGTTTGACTTATACACTACCTTCTCCTGTTAGTGCAGAAGTCTATCTAAAAGAGCATGAATGTGTTTTTCGCACTGTTTGAGTTTTGCACCCATGAGTTTGTTAAACTGTTATAGAATGCCTGATAAATGGTTGACATCTGTAATAATTAATCAGACATTTTGCCTTCATTATGCAATAGAAGATTgaagtttagtgtgtgtatgtggggggGAAGCAATTTGTCAAGCCAAgttctgttttatatatatatattttgctgttttgtgaGAGTCACACTGATAATGATCTAAGAAACATACCCtcattttaatgcattcattttccCTCAGATTATTTGGTATGGAGTATGTCTGCTTCAAATCTCAATAGAATTGTTTTCATCATTATTCTTTAGATGAAACCAGTGAGGCCTTCTTTGAAGgtacaatatttaaa

Function

NR:

description
PREDICTED: contactin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918266.2 True 4048 mRNA 0.46 23 7066318 7193141

Neighbor

gene id symbol gene type direction distance location
cntn4 cntn4,LOC108272185,LOC108435696,LOC107713523,LOC107667016,LOC106582845 coding downstream 107158 6800925 ~ 6959160 (-)
rhebl1 rhebl1,rheb,LOC103035598,LOC108435697,LOC105901881,LOC107710165 coding downstream 278726 6782273 ~ 6787592 (-)
LOC113531909 stk4,LOC108435692,LOC105901859,LOC103371188 coding downstream 295470 6744383 ~ 6770848 (-)
rbpjl rbpjl,LOC108271532 coding downstream 464209 6578612 ~ 6602109 (-)
oser1 oser1 coding downstream 511134 6549355 ~ 6555184 (-)
chl1b chl1,LOC100380675 coding upstream 88866 7282007 ~ 7370519 (-)
ppp4r2b ppp4r2,LOC102785172,LOC107667031 coding upstream 585049 7778190 ~ 7786449 (-)
gxylt2 gxylt2,LOC107666964,LOC106565732 coding upstream 595422 7788563 ~ 7822058 (-)
gpr27 gpr27 coding upstream 798073 7991214 ~ 7993623 (-)
gnat1 LOC108271583,LOC108424115,LOC102793896,LOC108231337 coding upstream 1376206 8569347 ~ 8574762 (-)
G22896 NA non-coding downstream 265499 6799518 ~ 6800819 (-)
G22743 NA non-coding downstream 300626 6718275 ~ 6765692 (-)
G22699 NA non-coding downstream 382588 6683454 ~ 6683730 (-)
G22695 NA non-coding downstream 390631 6675480 ~ 6675687 (-)
G22650 NA non-coding downstream 443876 6621935 ~ 6622442 (-)
G23337 NA non-coding upstream 479559 7672700 ~ 7675334 (-)
G23330 NA non-coding upstream 511986 7705127 ~ 7710210 (-)
G23417 NA non-coding upstream 690387 7883528 ~ 7883813 (-)
G23426 NA non-coding upstream 713184 7906325 ~ 7907008 (-)
G23427 NA non-coding upstream 720555 7913696 ~ 7914794 (-)
G22591 NA other downstream 586307 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 857652 6205284 ~ 6208666 (-)
LOC117596222 NA other downstream 989441 6074035 ~ 6076877 (-)
blcap blcap,bc10 other downstream 1101135 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 1530258 5532037 ~ 5536060 (-)
mitfa mitf,LOC108424034 other upstream 1067344 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 1150483 8343624 ~ 8351694 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other upstream 1286233 8479374 ~ 8484181 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 2242365 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 2522375 9715516 ~ 9726051 (-)

Expression


Co-expression Network