LOC113530316 (LOC108271764)


Basic Information

Item Value
gene id LOC113530316
gene name LOC108271764
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9942055 ~ 9954145 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920191.2
AGCTGCGTGAATGTGGTTGAGAAACAGTTCAGAGGAGTTTcttttaaaacaggaagtcGTCGTGCTCTTTGAACAGCTCGCGCTCTTTGCGTGCTCTCAATCACATCAGCGCGTCAGAGATGCAGCTTTATGTCTGTTAGTCACTTCACTTGCGAAAGGATATACTATCTGTGATTCTGTAGGCTATCCATTGCGGAACTTTTactctcttttctttatttccgTTATAGTTGCGTTTAGGAACATTTCAACTAGTTTAGCTGGTTAAAAAAAGGACGAAAACTTTTCCCCAATGAATAGTGATTGTGAAAACAGTGCTGTGGGGTTCGCGGCTGGAAGCGGCCAGGACGAGCTGGACTTTCCCTTTCCTCTGTTTCTTTACGGACAAACTGGAAATGACATTCCACACGATGACCAAGCAGATGAGCTTGATGCTCTGTCACACCTCGATGCTAATCCACCCTCGTCCAATTCTCATCAGGCCCATGCTCCATATAGCGATCTGTCCATCCATCAGCCTTCCTATAATCCTCCACCTTCTGAGGACCTCCTCACCTGTCATCACCCTGATCTGCGAGATCTtctcagtcactcactctcATCCCAGGCTAGCCCTCGCATTGAGATTACCTGCTCAGAGCTACACCACCAGCACCGTGAGCATGTCCAAACAGCACCAGTGGATATCAGTCGGCGTCTAGCTGTGCCTCCGTATCAGAACCTGCTCTACAGGGAGAACCTGAGTCCGGCAAGCAGCACTTCCTCCAGCTGGCACTCGGAGGTGTATTCACCCCAGCCATCACCCTGTGTTTCTCCCAGTGCTTCAGGAGGTGGAGGTTTAGCTGCAATGACCGTGGCTGAGTTGTGCCCAAGGCTCCAGGCCATCCATGCATCCGGTTCTCCCCGTACTTCTCCAGATACATCCCCACGCACCAGCATCACAGAGgagactttcctgaactgcaGGCCTTCATCTGCCTCCTCCTCACGGCCAGGTTCGCGCTCCACTTCTCCTCAGGGAAAACGCACTTATGAGCAATACCAGAACCCTGCCCTGGTTGTCCCACGCTCCCGAAGCCCCTCTCCTCATGCAGTCCGAGAGGAGTTTATCGAGCCTTGTAGACCAACAGCTAACCCTGATGAATTTGTAGACAGCCTCAACAGACACCTGGCTAAACCAGTGCCCACAAAGATTGGACGGCCTAATCAGGAGTACATGCTCTACAGCCAAACAGAGCATGCTGTGTTCCATGAAGTGAAGAGGGAACCCGTAATGGAACCGATATATGTCATGCCATCCATCGGTTGGTCCAATCCGATGCCCACAGCCATGTGCAGCATGTCATTGGCATCCCTGCCTGCTCTGGAGTGGACGCTTCCCAGCAGCACAGAGCAGTACGAGCTGAGAATAGAGATTCAGCCCAGACAGCACCACAGAGCCCACTATGAGACTGAAGGAAGCAGAGGAGCAGTTAAAGCAGTATCAGGAGGACATCCTGTGGTTCAGTTGCACGGGTACAGTGGGCGAGAAGCTCTGGCACTGCAGGTCTTCATTGGAACAGCTGACGAGAGAGCCGTGAGGCCACATGCCTTTTACCAGGTCCACCGTATCACTGGCAAAACCGTCACCACCAGCAGCCATGAGAGAATGGTGGATGGAACCAAGGTTCTGGAACTGCCACTGGAACCCAAAGACAACATGCAGGCAGTTGTGGACTGTGCTGGGATACTGAAGCTGAAGAATGCTGATATTGAGCTGCGGAAAGGTGAGACAGATGTGGGACGGAAGAACACACGGGTGCGGCTGGTCTTTCGTGTCCATGTGCCTCAGCCCAGAGGCCAGTGGCTTTCTCTCCAAGTGGCCTCACATCCCATCGAATGCTCTCAGAGATCTGCCCATGAACTTCCAGCCGTGGAGAGGCAGGATTTGGACCACTGCTCGGTGCTGGGCAGACTGCAGATGATCCTGACTGGTCAAAACTTCACCTCTGAGTCCAGGGTGCTATTCACTGAGAAGACCCAAGATGGCTTGGAGGTATGGGAGATGGAGGCTACAGTCAACAGAGAAAAAAGTCAATCAAACATGCTGTATGTGGAAATTCCTCCATATCGAGACCACAACATCTACCACCCAGCCAAAGTCAACTTCTATGTGTTGAACGGGAAGAGGAAGCGTAGTCAGCCACAACACTTCACCTACATGCCTCTCCCAGTTCCACTGATAAAGGCTGAGCCAGTGGATGAGTATCAGTATGGACAGCTTGGCTGCAGTGTCTCCCAGGTCTTAGGTGTCTCTTCACAATCATACCATCACACTGCCCAGCTCCCTACCAGCTGCTGTGCTATACCATGCCAGGTTTCTCAGAGAGCCAGCAGCCCTACCCTGTACCCTCCAGCCTCTGAGTACCAGCTCCATCAGCATTCAGCCCTCTACCAGAGCCAGGTGGAGGCCCTCAGCAGCAGCCCTGGCCACTACCAGCCTCCCCTGGATCACCCTGCACCTGGAGTGCAACCCATCTGCTCAGGTCAGGCACCTGCCGTAGGGCCAAATCCAGGCTCTCATCTCAAACCCAGCAATTACCAGCACATCATAGCTGGGCACAGCTACCAGGCTGGTGTCTCTGTGTTTCCAGGCCTGgatgcagccaatcagagaagCTTTGGTCAGAGAGCAGCTCCTCCAGTGCAGAGCTACAACCAGCAGCAGCCTGTGGAGCATCAGAGAACAAGCAGCCCTGTAAGAGTGAAGCAGGAGAATCTGGACCAAGCTTACCTGGATGATGTGAATGAAGTGATCAGAAAAGATCTGACTGTTCATCCCAGTGATCAGTGACAGCCGTAACTTCTGGACAACTCATCAGCCTCCACGTCTGCACAGATTCTTTATGTCATATCAGAGTGTTTTTAAAGGGGTGGTGATAGttgttaattataataatgactGCAGATTGCATATTACTGATAATCACACAACTAGTAAGGAGTCAGGAAAAACACATTACctttaatttcaaattattgctaacaaaaatattttgtcttgGAACCCACATGCAAGTTAGCATCTACAACCAGTTTTGAATTTAGGGATCATTTGGGAGAATCCACTAGCTGCCTTAGCTAACGCAGACAAAAGCCAGTGAATAAAGGCTTCTAATAGGAAACCAAATATCTGACCATCATTACAATCGCAAACCTGAATTACTTGTTCAACAGAAATTTGTCAGATGAGCTTTCTTCTTATTTACTGTTGCATAGTGACAGGCAGATGTACATGTTTGAGAGTGCTAGCTCAAACAAGAACTGTCCTAGAGAAGAACATGATTAGAAACTAGTAGGAAAACATGAAGGTCTTCCCAAAGTAAGTAGTGTCAGTGACTAAAGTATATGATTTGTAGCAGGTACATTCAACAAACAATAACGTTATAGCTCTAGACCTAAATACAACAAGGCAAAAGCTAAAGTTAATGTTAGCCAAGCAGATACAgtagtgttagctagctattttacCTCAGTTTGACTTCTCATTTGTCTCGAGGCTGAGAGAATCGACAACTTGTCCTTTTAGTCTGGAATATAGGTGGAATTGCAGATTTCAGAATTTTGCATGGTGGATATcccagctttaactcagctttttAGATTCAGTCTTTCAGTCTGTTGAAGTCCTTGCTACATAATTTTTCTCTGCCATGTTAACTATTCCTATAGCTGCTACCAACTTTTTTGCAAAGTTCTTTTTTGTAGATAGTTGTGGAAAACAGCACCTTTAGTTCTCAGGTATGCTGCACTCTGCTAGtattgaaattaaatgaacAGTATGAGGTACAAGCACTATATGACTAATGCTAGCTACCAGTCAGGATCAGGTACTTGTCATGAGATTTCCTGTTGATTGTATGTCATGTATGTGTAATGCATCTTGGGGGTAGACAGAAAATTGATGGACATAAAAGAGACAGTGATACAAAATTGAGGTGCAATACCATGCTACAGAATACTACAAAACATGACAAATAATATGTTAACCACCAGTTTTATACCAGAATGATCTTTTAGTTAACAGTTATTTTCAATGATTATGTCATTCAGTTTTAATGGACTTGTCTAAGATAAAGTACAACTATGAAATATcagtcagttaaaaaaaatttttaccctgatattttatttcacagatgTTATT
>XM_026920200.2
GCTGCGTGAATGTGGTTGAGAAACAGTTCAGAGGAGTTTcttttaaaacaggaagtcGTCGTGCTCTTTGAACAGCTCGCGCTCTTTGCGTGCTCTCAATCACATCAGCGCGTCAGAGATGCAGCTTTATGTCTGTTAGTCACTTCACTTGCGAAAGGATATACTATCTGTGATTCTGTAGGCTATCCATTGCGGAACTTTTactctcttttctttatttccgTTATAGTTGCGTTTAGGAACATTTCAACTAGTTTAGCTGGTTAAAAAAAGGACGAAAACTTTTCCCCAATGAATAGTGATTGTGAAAACAGTGCTGTGGGGTTCGCGGCTGGAAGCGGCCAGGACGAGCTGGACTTTCCCTTTCCTCTGTTTCTTTACGGACAAACTGGAAATGACATTCCACACGATGACCAAGATGAGCTTGATGCTCTGTCACACCTCGATGCTAATCCACCCTCGTCCAATTCTCATCAGGCCCATGCTCCATATAGCGATCTGTCCATCCATCAGCCTTCCTATAATCCTCCACCTTCTGAGGACCTCCTCACCTGTCATCACCCTGATCTGCGAGATCTtctcagtcactcactctcATCCCAGGCTAGCCCTCGCATTGAGATTACCTGCTCAGAGCTACACCACCAGCACCGTGAGCATGTCCAAACAGCACCAGTGGATATCAGTCGGCGTCTAGCTGTGCCTCCGTATCAGAACCTGCTCTACAGGGAGAACCTGAGTCCGGCAAGCAGCACTTCCTCCAGCTGGCACTCGGAGGTGTATTCACCCCAGCCATCACCCTGTGTTTCTCCCAGTGCTTCAGGAGGTGGAGGTTTAGCTGCAATGACCGTGGCTGAGTTGTGCCCAAGGCTCCAGGCCATCCATGCATCCGGTTCTCCCCGTACTTCTCCAGATACATCCCCACGCACCAGCATCACAGAGgagactttcctgaactgcaGGCCTTCATCTGCCTCCTCCTCACGGCCAGGTTCGCGCTCCACTTCTCCTCAGGGAAAACGCACTTATGAGCAATACCAGAACCCTGCCCTGGTTGTCCCACGCTCCCGAAGCCCCTCTCCTCATGCAGTCCGAGAGGAGTTTATCGAGCCTTGTAGACCAACAGCTAACCCTGATGAATTTGTAGACAGCCTCAACAGACACCTGGCTAAACCAGTGCCCACAAAGATTGGACGGCCTAATCAGGAGTACATGCTCTACAGCCAAACAGAGCATGCTGTGTTCCATGAAGTGAAGAGGGAACCCGTAATGGAACCGATATATGTCATGCCATCCATCGGTTGGTCCAATCCGATGCCCACAGCCATGTGCAGCATGTCATTGGCATCCCTGCCTGCTCTGGAGTGGACGCTTCCCAGCAGCACAGAGCAGTACGAGCTGAGAATAGAGATTCAGCCCAGACAGCACCACAGAGCCCACTATGAGACTGAAGGAAGCAGAGGAGCAGTTAAAGCAGTATCAGGAGGACATCCTGTGGTTCAGTTGCACGGGTACAGTGGGCGAGAAGCTCTGGCACTGCAGGTCTTCATTGGAACAGCTGACGAGAGAGCCGTGAGGCCACATGCCTTTTACCAGGTCCACCGTATCACTGGCAAAACCGTCACCACCAGCAGCCATGAGAGAATGGTGGATGGAACCAAGGTTCTGGAACTGCCACTGGAACCCAAAGACAACATGCAGGCAGTTGTGGACTGTGCTGGGATACTGAAGCTGAAGAATGCTGATATTGAGCTGCGGAAAGGTGAGACAGATGTGGGACGGAAGAACACACGGGTGCGGCTGGTCTTTCGTGTCCATGTGCCTCAGCCCAGAGGCCAGTGGCTTTCTCTCCAAGTGGCCTCACATCCCATCGAATGCTCTCAGAGATCTGCCCATGAACTTCCAGCCGTGGAGAGGCAGGATTTGGACCACTGCTCGGTGCTGGGCAGACTGCAGATGATCCTGACTGGTCAAAACTTCACCTCTGAGTCCAGGGTGCTATTCACTGAGAAGACCCAAGATGGCTTGGAGGTATGGGAGATGGAGGCTACAGTCAACAGAGAAAAAAGTCAATCAAACATGCTGTATGTGGAAATTCCTCCATATCGAGACCACAACATCTACCACCCAGCCAAAGTCAACTTCTATGTGTTGAACGGGAAGAGGAAGCGTAGTCAGCCACAACACTTCACCTACATGCCTCTCCCAGTTCCACTGATAAAGGCTGAGCCAGTGGATGAGTATCAGTATGGACAGCTTGGCTGCAGTGTCTCCCAGGTCTTAGGTGTCTCTTCACAATCATACCATCACACTGCCCAGCTCCCTACCAGCTGCTGTGCTATACCATGCCAGGTTTCTCAGAGAGCCAGCAGCCCTACCCTGTACCCTCCAGCCTCTGAGTACCAGCTCCATCAGCATTCAGCCCTCTACCAGAGCCAGGTGGAGGCCCTCAGCAGCAGCCCTGGCCACTACCAGCCTCCCCTGGATCACCCTGCACCTGGAGTGCAACCCATCTGCTCAGGTCAGGCACCTGCCGTAGGGCCAAATCCAGGCTCTCATCTCAAACCCAGCAATTACCAGCACATCATAGCTGGGCACAGCTACCAGGCTGGTGTCTCTGTGTTTCCAGGCCTGgatgcagccaatcagagaagCTTTGGTCAGAGAGCAGCTCCTCCAGTGCAGAGCTACAACCAGCAGCAGCCTGTGGAGCATCAGAGAACAAGCAGCCCTGTAAGAGTGAAGCAGGAGAATCTGGACCAAGCTTACCTGGATGATGTGAATGAAGTGATCAGAAAAGATCTGACTGTTCATCCCAGTGATCAGTGACAGCCGTAACTTCTGGACAACTCATCAGCCTCCACGTCTGCACAGATTCTTTATGTCATATCAGAGTGTTTTTAAAGGGGTGGTGATAGttgttaattataataatgactGCAGATTGCATATTACTGATAATCACACAACTAGTAAGGAGTCAGGAAAAACACATTACctttaatttcaaattattgctaacaaaaatattttgtcttgGAACCCACATGCAAGTTAGCATCTACAACCAGTTTTGAATTTAGGGATCATTTGGGAGAATCCACTAGCTGCCTTAGCTAACGCAGACAAAAGCCAGTGAATAAAGGCTTCTAATAGGAAACCAAATATCTGACCATCATTACAATCGCAAACCTGAATTACTTGTTCAACAGAAATTTGTCAGATGAGCTTTCTTCTTATTTACTGTTGCATAGTGACAGGCAGATGTACATGTTTGAGAGTGCTAGCTCAAACAAGAACTGTCCTAGAGAAGAACATGATTAGAAACTAGTAGGAAAACATGAAGGTCTTCCCAAAGTAAGTAGTGTCAGTGACTAAAGTATATGATTTGTAGCAGGTACATTCAACAAACAATAACGTTATAGCTCTAGACCTAAATACAACAAGGCAAAAGCTAAAGTTAATGTTAGCCAAGCAGATACAgtagtgttagctagctattttacCTCAGTTTGACTTCTCATTTGTCTCGAGGCTGAGAGAATCGACAACTTGTCCTTTTAGTCTGGAATATAGGTGGAATTGCAGATTTCAGAATTTTGCATGGTGGATATcccagctttaactcagctttttAGATTCAGTCTTTCAGTCTGTTGAAGTCCTTGCTACATAATTTTTCTCTGCCATGTTAACTATTCCTATAGCTGCTACCAACTTTTTTGCAAAGTTCTTTTTTGTAGATAGTTGTGGAAAACAGCACCTTTAGTTCTCAGGTATGCTGCACTCTGCTAGtattgaaattaaatgaacAGTATGAGGTACAAGCACTATATGACTAATGCTAGCTACCAGTCAGGATCAGGTACTTGTCATGAGATTTCCTGTTGATTGTATGTCATGTATGTGTAATGCATCTTGGGGGTAGACAGAAAATTGATGGACATAAAAGAGACAGTGATACAAAATTGAGGTGCAATACCATGCTACAGAATACTACAAAACATGACAAATAATATGTTAACCACCAGTTTTATACCAGAATGATCTTTTAGTTAACAGTTATTTTCAATGATTATGTCATTCAGTTTTAATGGACTTGTCTAAGATAAAGTACAACTATGAAATATcagtcagttaaaaaaaatttttaccctgatattttatttcacagatgTTATT

Function

NR:

description
PREDICTED: nuclear factor of activated T-cells, cytoplasmic 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920191.2 True 4186 mRNA 0.47 10 9942055 9954145
XM_026920200.2 False 4182 mRNA 0.47 10 9942055 9954144

Neighbor

gene id symbol gene type direction distance location
csrp1b csrp1,LOC108441585,LOC104918388,LOC101487148 coding downstream 185459 9752621 ~ 9756596 (-)
tnni1b tnni1,LOC106582713,LOC106566026,LOC103040607 coding downstream 192291 9743031 ~ 9749764 (-)
sys1 sys1,LOC107587582,LOC107744372,LOC106565403 coding downstream 354737 9583921 ~ 9587318 (-)
snrpc snrpc,LOC107587645,LOC107696417,LOC107666039 coding downstream 365067 9570763 ~ 9576988 (-)
ilrun c11h6orf106,cunh6orf106,zgc:101577,LOC107724532,LOC107595408,LOC107666165 coding downstream 405151 9519378 ~ 9536904 (-)
ube2c ube2c,LOC107744406 coding upstream 24728 9978873 ~ 9982851 (-)
LOC113534196 dnttip1 coding upstream 28920 9983065 ~ 9992886 (-)
pcif1 pcif1,LOC107666074,LOC107696439 coding upstream 40204 9994349 ~ 10006093 (-)
ctsa ctsa,LOC107587598,LOC107696438,LOC107744356,LOC107666023,LOC107560512 coding upstream 71279 10025424 ~ 10033450 (-)
slc12a5a slc12a5,si:ch211-59d13.2,LOC107744354 coding upstream 90617 10044762 ~ 10198391 (-)
G24572 NA non-coding downstream 3012 9938256 ~ 9939043 (-)
G24268 NA non-coding downstream 266316 9675522 ~ 9675739 (-)
G24260 NA non-coding downstream 305536 9635854 ~ 9636519 (-)
LOC113532556 NA non-coding downstream 321096 9615587 ~ 9620959 (-)
LOC113532571 NA non-coding downstream 326472 9612380 ~ 9615583 (-)
G24611 NA non-coding upstream 197672 10151817 ~ 10152165 (-)
G24617 NA non-coding upstream 206887 10161032 ~ 10161241 (-)
G24620 NA non-coding upstream 214066 10168211 ~ 10168469 (-)
G24623 NA non-coding upstream 216825 10170970 ~ 10171175 (-)
LOC113534445 NA non-coding upstream 1012551 10966696 ~ 10984007 (-)
G24516 NA other downstream 73777 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 216004 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 500210 9435506 ~ 9441845 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 1457874 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 1590361 8343624 ~ 8351694 (-)
G24760 NA other upstream 535148 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 961897 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 1488326 11442471 ~ 11485469 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 1732600 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 3539367 13493512 ~ 13502170 (-)

Expression


Co-expression Network