LOC113530515 (wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800)


Basic Information

Item Value
gene id LOC113530515
gene name wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15762536 ~ 15775878 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920619.2
TCCTGCCCTAGTTACAAGACCCCTCTCCCTCAGTCACACACATTGCTCTCATGCTGCAAACGTGAAACTCTCTTGCTTCATACCGGTCTCTTGAGAGCagtcttgttcttgttcttacATTTGCTTCCACTGAAGATCTTCCAGGTGGCCTTCACCTGATtcgacagttttttttttccaccttccATACGCGCAGCTCCTTGGCGGGTAGAAGTGCTGACCCGCCATGTTTCTGGTTCTGGTGGTAACAGATGAGTTGAGGCAGCTCCTGGCCAGGGCAAGGAACGGGACTGGCCGTCTCATCCAGGTGCTGATCCGAGACGAGCAGTTGGTTCTGGGTGCATACCGTGAGCCATCTCAGTCCTGGGAGAAAGATTATGACCACTTCCTGCTTCCCCTACTTGATCCCCAGGAACCTTGCTACATCCTGTATCGCCTTGACTCCCACAATGCACAGGGATATGAGTGGATCTTTCTTTCTTGGTCACCTGACCAGTCTCCAACCAGACAGAAGATGCTGTATGCTGCCACTCGTGCAACAGTGAAGAAAGAATTTGGTGGAGGGCATGTAAAAGATGAGCTCTTTGGCAATGTGGTGGAGGATGTTTGTCTTCAGGGTTACCTTCGTCATGTATCATCAATCTCCGCTCCTGCTCCTCTCACACTCGCTGAGCAGGAGCTGCAGAGAATCAAAACCACGGAGTGCAAAGTTAAGCAGGTTATTACAGAGATGAGTGTGGAAACTAAGCCTCAGACCTTACAGGGTCTGGCCTTTCCGCTACAGCCAGAGGCTAAACACGCTTTACAGCAACTCGCTAAGAAACACATTAACTACATCCAGCTGAGGTTGGACACTGAGAAAGAGACCATTGAGCTGGTGCACACTCGGCCCACAGAGACACATGATCTTCGTAGCAGGATCCCAACAGACACACCACGCTATCACTTCTTCCTCTATAAGCACTCACACGAAGGAGTCTACCTAGAGTCTGTTGTGTTCATCTACTCGATGCCGGGCTACCGCTGCAGCGTTAAGGAGAGGATGCTGTATTCCAGCTGTAAGAGTCGGCTGCTGGAACAGGTGGAGAGAGACTACCATATAGAGGTGGTCAAAAAGttggAGATAGACAGCGGGGATGAGTTGACGGAGCAGTACTTGTATGAGGAAATCCACCCTAAGCAGCATGCTCACAAGGAGGCATTCGCCAAACCTCGCGGTCCTGCAGggaaaagaggaaataaacGGCTGATTAAAGGAGTGGGAGAGAATGGTGTGAACAGCTAGAGAGGAAAGAACATGGGAAACAGGTCCCTGTTCTGCCCTCCAAGAATCTGAGGATTTTGCTGTGTTAAGGCATGACAGGATGAAAGAGGTTGAAATGTGGTGTCCAgttgtttttattcttattaattgtgatgcttttttttttttaaactttattagcTTGGgtttcataaatcataaataactCATTCTTTTATTCAAATTTGTGTACACAttcataaaggaaaaaaaaaggaaactcaGGAATTCATTCTGTACCTATAAATGGTCTGCtcacactttttattcattcagaaTTCGAGACATAACTTGACAGTCATGTTTCATGCACAAATTCAGTTAGTGTCAGTACTCAAAGTGGACTAGTGGACagttcatatttaaatttttcttgattttatttcacaacaCTACCATACATTACCATTACCAAACATAGCAGATCTAGCCTCAGTAGAATGTGAATTTTGTATGAGTAAGAAACACTTTATAGGTCACTGATGTTCCAGTTGTGATTTTAGATCTGTGTTTTATAACTGATTGGATTGGCGCTAATTTGCTTTACAACATTAGATTGAAAACCTAACTGTTTATGCATAAGCATTTACTTCAGTGACACTAATGTAAATCTTTCTCACTGTTTTCTGTCATATCAAGTTGTGAAAATAGCTGTTCTTAATGAAAATAAGAACtcagaataaattatttttatgaa
>XM_026920628.2
ATCCTGCCCTAGTTACAAGACCCCTCTCCCTCAGTCACACACATTGCTCTCATGCTGCAAACGTGAAACTCTCTTGCTTCATACCGGTCTCTTGAGAGCagtcttgttcttgttcttacATTTGCTTCCACTGAAGATCTTCCAGGTGGCCTTCACCTGATtcgacagttttttttttccaccttccATACGCGCAGCTCCTTGGCGGGTAGAAGTGCTGACCCGCCATGTTTCTGGTTCTGGTGGTAACAGATGAGTTGAGGCAGCTCCTGGCCAGGGCAAGGAACGGGACTGGCCGTCTCATCCAGGTGCTGATCCGAGACGAGCAGTTGGTTCTGGGTGCATACCGTGAGCCATCTCAGTCCTGGGAGAAAGATTATGACCACTTCCTGCTTCCCCTACTTGATCCCCAGGAACCTTGCTACATCCTGTATCGCCTTGACTCCCACAATGCACAGGGATATGAGTGGATCTTTCTTTCTTGGTCACCTGACCAGTCTCCAACCAGACAGAAGATGCTGTATGCTGCCACTCGTGCAACAGTGAAGAAAGAATTTGGTGGAGGGCATGTAAAAGATGAGCTCTTTGGCAATGTGGTGGAGGATGTTTGTCTTCAGGGTTACCTTCGTCATGTATCATCAATCTCCGCTCCTGCTCCTCTCACACTCGCTGAGCAGGAGCTGCAGAGAATCAAAACCACGGAGGTTATTACAGAGATGAGTGTGGAAACTAAGCCTCAGACCTTACAGGGTCTGGCCTTTCCGCTACAGCCAGAGGCTAAACACGCTTTACAGCAACTCGCTAAGAAACACATTAACTACATCCAGCTGAGGTTGGACACTGAGAAAGAGACCATTGAGCTGGTGCACACTCGGCCCACAGAGACACATGATCTTCGTAGCAGGATCCCAACAGACACACCACGCTATCACTTCTTCCTCTATAAGCACTCACACGAAGGAGTCTACCTAGAGTCTGTTGTGTTCATCTACTCGATGCCGGGCTACCGCTGCAGCGTTAAGGAGAGGATGCTGTATTCCAGCTGTAAGAGTCGGCTGCTGGAACAGGTGGAGAGAGACTACCATATAGAGGTGGTCAAAAAGttggAGATAGACAGCGGGGATGAGTTGACGGAGCAGTACTTGTATGAGGAAATCCACCCTAAGCAGCATGCTCACAAGGAGGCATTCGCCAAACCTCGCGGTCCTGCAGggaaaagaggaaataaacGGCTGATTAAAGGAGTGGGAGAGAATGGTGTGAACAGCTAGAGAGGAAAGAACATGGGAAACAGGTCCCTGTTCTGCCCTCCAAGAATCTGAGGATTTTGCTGTGTTAAGGCATGACAGGATGAAAGAGGTTGAAATGTGGTGTCCAgttgtttttattcttattaattgtgatgcttttttttttttaaactttattagcTTGGgtttcataaatcataaataactCATTCTTTTATTCAAATTTGTGTACACAttcataaaggaaaaaaaaaggaaactcaGGAATTCATTCTGTACCTATAAATGGTCTGCtcacactttttattcattcagaaTTCGAGACATAACTTGACAGTCATGTTTCATGCACAAATTCAGTTAGTGTCAGTACTCAAAGTGGACTAGTGGACagttcatatttaaatttttcttgattttatttcacaacaCTACCATACATTACCATTACCAAACATAGCAGATCTAGCCTCAGTAGAATGTGAATTTTGTATGAGTAAGAAACACTTTATAGGTCACTGATGTTCCAGTTGTGATTTTAGATCTGTGTTTTATAACTGATTGGATTGGCGCTAATTTGCTTTACAACATTAGATTGAAAACCTAACTGTTTATGCATAAGCATTTACTTCAGTGACACTAATGTAAATCTTTCTCACTGTTTTCTGTCATATCAAGTTGTGAAAATAGCTGTTCTTAATGAAAATAAGAACtcagaataaattatttttatgaa
>XM_026920638.2
GTGCCAGCATGTGCTCATGGAGCAGTTGGTTCTGGGTGCATACCGTGAGCCATCTCAGTCCTGGGAGAAAGATTATGACCACTTCCTGCTTCCCCTACTTGATCCCCAGGAACCTTGCTACATCCTGTATCGCCTTGACTCCCACAATGCACAGGGATATGAGTGGATCTTTCTTTCTTGGTCACCTGACCAGTCTCCAACCAGACAGAAGATGCTGTATGCTGCCACTCGTGCAACAGTGAAGAAAGAATTTGGTGGAGGGCATGTAAAAGATGAGCTCTTTGGCAATGTGGTGGAGGATGTTTGTCTTCAGGGTTACCTTCGTCATGTATCATCAATCTCCGCTCCTGCTCCTCTCACACTCGCTGAGCAGGAGCTGCAGAGAATCAAAACCACGGAGTGCAAAGTTAAGCAGGTTATTACAGAGATGAGTGTGGAAACTAAGCCTCAGACCTTACAGGGTCTGGCCTTTCCGCTACAGCCAGAGGCTAAACACGCTTTACAGCAACTCGCTAAGAAACACATTAACTACATCCAGCTGAGGTTGGACACTGAGAAAGAGACCATTGAGCTGGTGCACACTCGGCCCACAGAGACACATGATCTTCGTAGCAGGATCCCAACAGACACACCACGCTATCACTTCTTCCTCTATAAGCACTCACACGAAGGAGTCTACCTAGAGTCTGTTGTGTTCATCTACTCGATGCCGGGCTACCGCTGCAGCGTTAAGGAGAGGATGCTGTATTCCAGCTGTAAGAGTCGGCTGCTGGAACAGGTGGAGAGAGACTACCATATAGAGGTGGTCAAAAAGttggAGATAGACAGCGGGGATGAGTTGACGGAGCAGTACTTGTATGAGGAAATCCACCCTAAGCAGCATGCTCACAAGGAGGCATTCGCCAAACCTCGCGGTCCTGCAGggaaaagaggaaataaacGGCTGATTAAAGGAGTGGGAGAGAATGGTGTGAACAGCTAGAGAGGAAAGAACATGGGAAACAGGTCCCTGTTCTGCCCTCCAAGAATCTGAGGATTTTGCTGTGTTAAGGCATGACAGGATGAAAGAGGTTGAAATGTGGTGTCCAgttgtttttattcttattaattgtgatgcttttttttttttaaactttattagcTTGGgtttcataaatcataaataactCATTCTTTTATTCAAATTTGTGTACACAttcataaaggaaaaaaaaaggaaactcaGGAATTCATTCTGTACCTATAAATGGTCTGCtcacactttttattcattcagaaTTCGAGACATAACTTGACAGTCATGTTTCATGCACAAATTCAGTTAGTGTCAGTACTCAAAGTGGACTAGTGGACagttcatatttaaatttttcttgattttatttcacaacaCTACCATACATTACCATTACCAAACATAGCAGATCTAGCCTCAGTAGAATGTGAATTTTGTATGAGTAAGAAACACTTTATAGGTCACTGATGTTCCAGTTGTGATTTTAGATCTGTGTTTTATAACTGATTGGATTGGCGCTAATTTGCTTTACAACATTAGATTGAAAACCTAACTGTTTATGCATAAGCATTTACTTCAGTGACACTAATGTAAATCTTTCTCACTGTTTTCTGTCATATCAAGTTGTGAAAATAGCTGTTCTTAATGAAAATAAGAACtcagaataaattatttttatgaa

Function

symbol description
wdr82 Predicted to enable chromatin binding activity. Predicted to be involved in histone H3-K4 trimethylation. Predicted to be located in nucleus. Predicted to be part of Set1C/COMPASS complex. Orthologous to human WDR82 (WD repeat domain 82).
twf2 Enables ATP binding activity and protein kinase C binding activity. Involved in several processes, including cellular response to retinoic acid; positive regulation of cell projection organization; and regulation of actin cytoskeleton organization. Located in cytoplasm and growth cone.

NR:

description
PREDICTED: WD repeat-containing protein 82

GO: NA

KEGG:

id description
K08870 TWF; twinfilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920619.2 True 2000 mRNA 0.44 9 15762536 15775877
XM_026920628.2 False 1986 mRNA 0.44 8 15762536 15775878
XM_026920638.2 False 1697 mRNA 0.42 9 15762536 15773526

Neighbor

gene id symbol gene type direction distance location
cish LOC108272001 coding downstream 6195 15752213 ~ 15756341 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding downstream 35422 15618351 ~ 15727114 (-)
rad18 rad18 coding downstream 194108 15505644 ~ 15568428 (-)
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding downstream 483823 15276905 ~ 15278713 (-)
nprl2 nprl2 coding downstream 722933 15033446 ~ 15039603 (-)
wdr82 wdr82,swd2,LOC106565976 coding upstream 2312 15778190 ~ 15784244 (-)
cplane2 rsg1,LOC107673497,LOC107750284,LOC107712114 coding upstream 15690 15791568 ~ 15794776 (-)
cadpsb cadpsb,LOC108271493,LOC108436257,LOC107673496 coding upstream 19923 15795801 ~ 15874718 (-)
LOC113536620 slc6a13l,LOC108271591,LOC108436256,LOC107673491,LOC107567081,LOC107712076,LOC107658051 coding upstream 123413 15899291 ~ 15910072 (-)
LOC113536633 LOC108271735,LOC108413697 coding upstream 159903 15935781 ~ 15951487 (-)
G28191 NA non-coding downstream 37080 15720767 ~ 15725456 (-)
G28182 NA non-coding downstream 80492 15681570 ~ 15682044 (-)
G28173 NA non-coding downstream 145788 15615025 ~ 15616748 (-)
G27953 NA non-coding downstream 258493 15503832 ~ 15504043 (-)
G27935 NA non-coding downstream 284528 15477790 ~ 15478008 (-)
G28207 NA non-coding upstream 10975 15786853 ~ 15788153 (-)
G28232 NA non-coding upstream 153163 15929041 ~ 15933858 (-)
G28256 NA non-coding upstream 259955 16035833 ~ 16045675 (-)
G28258 NA non-coding upstream 262105 16037983 ~ 16039793 (-)
G28278 NA non-coding upstream 346851 16122729 ~ 16122949 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 267327 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 301535 15456635 ~ 15461001 (-)
G27843 NA other downstream 463517 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 886546 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1704091 14050401 ~ 14058445 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 349952 16125830 ~ 16135715 (-)
G29158 NA other upstream 1497077 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1696452 17472330 ~ 17529315 (-)
G29263 NA other upstream 2173279 17949157 ~ 17949718 (-)
G29279 NA other upstream 2295109 18070987 ~ 18072909 (-)

Expression


Co-expression Network