csrp1b (csrp1,LOC108441585,LOC104918388,LOC101487148)


Basic Information

Item Value
gene id csrp1b
gene name csrp1,LOC108441585,LOC104918388,LOC101487148
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9752621 ~ 9756596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921922.2
ctctctctctctctcccctctgttGTCCTGCCCACACTCTCTCACCCTGTCGCACTGATATTACCATGAGCAGCGGTGAACTTTTCACAACTGTTACTCAGCTGCATCCATCCACAGCACTAACATCACACTGACTGCAGgatgCCCCTCGGAGGGGGAAACAGGTGTGGCTGTTGCCAGAAGACTGTGTACTTTGCAGAGGAAGTCCAGTGTGAGGGGAAGTATTTCCACAAGTCCTGCTTTCTCTGTATGGTGTGCAGAAAGAATTTGGACAGCACCACGGTAGCTGTACACGTGGATGAAATCTACTGCAAATCGTGCTACGGCAAGAAATATGGTCCAAAAGGCTACGGATATGGTGGTGGTGCCGGAACCTTGAGTATGGACTCAGGTGAAGGACTGGGGATCAGACCTGTGGAGCAAGCACCACATCATCCTACCAACAACCCCAATGCCTCCAAGTTTGCACAGAAATTTGGCAGCTCAGATGTGTGCCCTCGCTGTGGCAAAGCTGTTTATGCAGCAGAGAAAGTGATAGGAGGTGGTAACTCATGGCATAAGGGCTGCTTCAGGTGTGCTAAGTGTGGAAAGAGCCTGGAGTCCACCACACTCGCAGATAAAGATGGAGAGATCTTCTGCAAAGGTTGCTATGCTAAGAACTTTGGGCCGAAGGGTTTTGGGTTCGGCCAGGGGGCAGGAGCTCTAGCCCATGCCCAGTAGGAATGCAGTACACAAAAACCAAGAGGATCTGCTCCAGCTCTGTGCTTGGACTTCAGCATGCTACACCTACCACAGAGTCTCACGTGCTTGCAGTTTGCACATGGAAATGCTTTTAAACCTTTAACTACTCATTAAAAGAGCATTATTTTACATGGACCAAATTCCAGAAGCAGCATGATTACACTTTCAATGAGGGGTTTATCAAACAGATGAAGTTTTCATACTGTTTTATATCTACTGGGGTTTAAATTTTCTTAATGAATCTTAAAAATAATGGAGGTTAACGAACCTTTAAAACTGCTAGAAAAAGAGCTAATTTATTAAGGtgactaaataaatattgcTTTCTTGTTCCACTGAGTCAGCAGTGAGCCACACTAGTGGTTTAAAACACATTACCTCACTGTGCAATACTACACATTAatacatattacagtttatgcttctttggaacctttataaattaaactgaaagaAACATGTTACATGTCtaataatgaagaaaataattgtGGAGAAATGGTCGTACTAAAATGATCTCCAAACACTGCTATAACCTTCCTTCACAGAAGCATGATAAACATGTGCAGATGACCTGATTGTTTACATATGACATCATTTAGACATCAAAATGCAGCAAGTGTTGTTAATGAACAATGGGGGATTATGTCCCCGAGTCTGTCGGCACCCTGACCAGGAGCATGCTGCCATGAAGACACAGACACATAGCTGGCTGAGTGAATGATGGAATCAAAGACTGAGAGATGCTGAGTGGCAGGTTGTCCTGTGCTAATCTGAAATGAAATACTCCAAATGTAGGTCTTTCAATAGACAACAGAAATACAgatatcagtaaaaaaaaaaaaaaaaaaa

Function

symbol description
csrp1 Enables RNA binding activity. Involved in platelet aggregation. Located in nucleus.

NR:

description
PREDICTED: cysteine and glycine-rich protein 1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09377 CSRP; cysteine and glycine-rich protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921922.2 True 1593 mRNA 0.43 6 9752621 9756596

Neighbor

gene id symbol gene type direction distance location
tnni1b tnni1,LOC106582713,LOC106566026,LOC103040607 coding downstream 2857 9743031 ~ 9749764 (-)
sys1 sys1,LOC107587582,LOC107744372,LOC106565403 coding downstream 165303 9583921 ~ 9587318 (-)
snrpc snrpc,LOC107587645,LOC107696417,LOC107666039 coding downstream 175633 9570763 ~ 9576988 (-)
ilrun c11h6orf106,cunh6orf106,zgc:101577,LOC107724532,LOC107595408,LOC107666165 coding downstream 215717 9519378 ~ 9536904 (-)
LOC113530144 LOC108271967,LOC108433664,LOC107595455,LOC107724522,LOC107744410,LOC107587644,LOC107666045,LOC107696418 coding downstream 242857 9500833 ~ 9509764 (-)
LOC113530316 LOC108271764 coding upstream 185459 9942055 ~ 9954145 (-)
ube2c ube2c,LOC107744406 coding upstream 222277 9978873 ~ 9982851 (-)
LOC113534196 dnttip1 coding upstream 226469 9983065 ~ 9992886 (-)
pcif1 pcif1,LOC107666074,LOC107696439 coding upstream 237753 9994349 ~ 10006093 (-)
ctsa ctsa,LOC107587598,LOC107696438,LOC107744356,LOC107666023,LOC107560512 coding upstream 268828 10025424 ~ 10033450 (-)
G24268 NA non-coding downstream 76882 9675522 ~ 9675739 (-)
G24260 NA non-coding downstream 116102 9635854 ~ 9636519 (-)
LOC113532556 NA non-coding downstream 131662 9615587 ~ 9620959 (-)
LOC113532571 NA non-coding downstream 137038 9612380 ~ 9615583 (-)
LOC113532565 NA non-coding downstream 156136 9594496 ~ 9596485 (-)
G24572 NA non-coding upstream 181660 9938256 ~ 9939043 (-)
G24611 NA non-coding upstream 395221 10151817 ~ 10152165 (-)
G24617 NA non-coding upstream 404436 10161032 ~ 10161241 (-)
G24620 NA non-coding upstream 411615 10168211 ~ 10168469 (-)
G24623 NA non-coding upstream 414374 10170970 ~ 10171175 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 26570 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 310776 9435506 ~ 9441845 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 1268440 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 1400927 8343624 ~ 8351694 (-)
mitfa mitf,LOC108424034 other downstream 1487392 8260485 ~ 8265229 (-)
G24516 NA other upstream 106771 9863367 ~ 9868278 (-)
G24760 NA other upstream 732697 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 1159446 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 1685875 11442471 ~ 11485469 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 1930149 11686745 ~ 11764135 (-)

Expression


Co-expression Network