sys1 (sys1,LOC107587582,LOC107744372,LOC106565403)


Basic Information

Item Value
gene id sys1
gene name sys1,LOC107587582,LOC107744372,LOC106565403
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9583921 ~ 9587318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922310.2
TGGTGCTGGTTTCACTTTGCTTTGTTGACATGGCCGCTTCTTCTCCCAGCCTCGTCATCAGCTGAGCAGAAAATATGGTTGCGTGATGTTACTGGGCTTTAGAGGGATTTAGTTCCTTTGGGTTGTGCTGTTTAAACTCAGATGCCAGCGAAGGTGCAGAGCCTGGTTGGGGTGACAGAGTGAACATCTCGGCCTCTCATGGTCTTTTCTTGAGTTGATTGAGGCCCTGGCTTGAAGATGGCCAGTCAGTTCCGCAGCTACATTTGGGATCCAGTGCTTATCATCTCCCAGATCATCCTGATGCAATGTATCTACTACAGCTTCCTAGGCCTGTGGTTAGCCGGCGTGGACGGTCTTGTGCACACCAACAGATCTCTCGATCAGATATTCAGTTATGAAGTTCTCGGTTTTTCAACGACACAAGGGCGACTCTCGATGATGGCATTCATTCTGAACTCTCTCACATGTGCTCTGGGCTTGTGGTTATTCATCCGCCGGGGGAAGCAGTGTTTGGACTTCACAATCACGGtgcattttttccacatgatcGGCTGCTGGATCTATAACTCCCACCTGCCAGCTGCTCTGTCATGGTGGCTGGTTAATGTGGCCTGCATTGCCCTAATGGCCGTCATCGGCGAGTACCTGTGCATGCGGACAGAGCTCAGGGCCATTCCTGTGAATAGTGGCCCCAAATCCAACCTATGAGAATCTTTCTTATGGACACACAATGCATTCAGAGCAGCCTTGAGCTGTGAATAAGTTGGCAGACGTGATTTAATCACTTGGCATTTTGagctgtgttgcagtgttaACTTTTGCTACCACTGGCGAAGTGGGATGCAAATAGGATCCAAGTATTACCTGAAAATGGACACTTCCTCTAATTCTgtcacttaatttttttcataatcataTAAAGATTAATTTTGGCTAAGTGGATGTTTCTCATGCTTCTGAAACGGAGGCTTGAAGCCCCAGAATCAGAATAATGCATAACTGAATCCTGAGATAAACTGTTTTCCTggcacttttttaattttagttttcaaAAGACTGTTTGAAGCATTTGGGGTTGTTGTATGCAAATAGACACTGAAGAACAGAACTGATtctttaatgttaataaataaatgttctgcatttgttctttaatgaaaaatCTTCCTTTAACATACTCATCTAGCAGTTATATCACATAACTGAATGATGGGATATTCTGGGTTACATGTGTACTTAATTTTGTATATGTGTCTTGTATATAAGTGCAAATaaattttgttgttattgtaa

Function

symbol description
sys1 Predicted to be involved in Golgi to endosome transport; Golgi to plasma membrane protein transport; and protein localization to Golgi apparatus. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Predicted to be integral component of Golgi membrane. Orthologous to human SYS1 (SYS1 golgi trafficking protein).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component

KEGG:

id description
K20318 SYS1; protein SYS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922310.2 True 1293 mRNA 0.43 4 9583921 9587318

Neighbor

gene id symbol gene type direction distance location
snrpc snrpc,LOC107587645,LOC107696417,LOC107666039 coding downstream 6933 9570763 ~ 9576988 (-)
ilrun c11h6orf106,cunh6orf106,zgc:101577,LOC107724532,LOC107595408,LOC107666165 coding downstream 47017 9519378 ~ 9536904 (-)
LOC113530144 LOC108271967,LOC108433664,LOC107595455,LOC107724522,LOC107744410,LOC107587644,LOC107666045,LOC107696418 coding downstream 74157 9500833 ~ 9509764 (-)
rps10 rps10,LOC107595410,LOC102793608 coding downstream 112565 9468540 ~ 9471356 (-)
hyal2a LOC108271981 coding downstream 151324 9429116 ~ 9432597 (-)
tnni1b tnni1,LOC106582713,LOC106566026,LOC103040607 coding upstream 155713 9743031 ~ 9749764 (-)
csrp1b csrp1,LOC108441585,LOC104918388,LOC101487148 coding upstream 165303 9752621 ~ 9756596 (-)
LOC113530316 LOC108271764 coding upstream 354737 9942055 ~ 9954145 (-)
ube2c ube2c,LOC107744406 coding upstream 391555 9978873 ~ 9982851 (-)
LOC113534196 dnttip1 coding upstream 395747 9983065 ~ 9992886 (-)
G24185 NA non-coding downstream 173618 9409908 ~ 9410303 (-)
LOC113527743 NA non-coding downstream 248594 9334668 ~ 9335327 (-)
G24087 NA non-coding downstream 253093 9330480 ~ 9330828 (-)
G24073 NA non-coding downstream 297266 9279922 ~ 9286655 (-)
G23991 NA non-coding downstream 513152 9070406 ~ 9070769 (-)
LOC113532565 NA non-coding upstream 7178 9594496 ~ 9596485 (-)
LOC113532571 NA non-coding upstream 25062 9612380 ~ 9615583 (-)
LOC113532556 NA non-coding upstream 28269 9615587 ~ 9620959 (-)
G24260 NA non-coding upstream 48536 9635854 ~ 9636519 (-)
G24268 NA non-coding upstream 88204 9675522 ~ 9675739 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 142076 9435506 ~ 9441845 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 1099740 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 1232227 8343624 ~ 8351694 (-)
mitfa mitf,LOC108424034 other downstream 1318692 8260485 ~ 8265229 (-)
G22591 NA other downstream 3103910 6479402 ~ 6480011 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 128198 9715516 ~ 9726051 (-)
G24516 NA other upstream 276049 9863367 ~ 9868278 (-)
G24760 NA other upstream 901975 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 1328724 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 1855153 11442471 ~ 11485469 (-)

Expression


Co-expression Network