chchd6b (chchd6)


Basic Information

Item Value
gene id chchd6b
gene name chchd6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14496220 ~ 14541322 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922322.2
ttattgtttaatccgCCTATGCGAATGGAGAACAGTGTCCCGTGTCGGAAAGTCACCCCTACTCTTTGAGCAAACTGCTAATATTACAGTAGAtcagattatttatttctttcagaGGACATGGGAGGCACAGAAAGCACGGGAAGGAAAGTATCTTTCGGTCTGAATGAAGACGACAACGTCACTGTTTTGCAAGGAATTAAGCTATCTGAAGATGTTCGTCAAAGGATGCGGGAGGCGAGTCAGTCTCCAGAAAAACCACAGTCCCCAAAACCAGAGGGTCGGAAGCCTGAGCCAGCTCCAGGCGGACATTCTTCAGCTGAGATGCCAGAGGAACTAAGAAAACGGTTCGAGCTGGAGCAGGCTCTGCTGAGGGAGGAGTTGGCACGCATCACCCGCAGAGAGAAAGAGTCTGTGGGAGACGATGTGAACCCTGCTGTTCTCCAAGAAAGAGCCAGAACCAAAGAGGAGCAGAAGAATGTGCAGAACTTGCAGCCAGCTGAGCTGAACGCTTGGGCCAAACAGCTAGCGAGGAAAGACGCTGAACTGAAGCATCTGGCTGCATTCTACAAAGAGCAACTGCAGCTCATGGAGAataagaATAAAGAATACTACCAACAGTCAACCCAGATGTACAACGAGGCAGCAACTAAAGCTAGTACCAACATCAAGCCGAAGAATACAGTTCCCATTTGTTCAGAGATGCAGTCTCAGGTACTGAACTGTTTTAAAGAGAACAGACATCAGACTCTGCACTGCTCCAGCCTGGCAAAGGAATATATGAACTGCATTAACTCGGCCAagaagAACATAATGGTCAACCATGGATCAtgaagatgaaggtgatgaCAACAGTGAgcatgaggaagaggaaaagagcGACAGCATAACTCACCACTTGAATCCAACAGTAGAGTTTTTAATGTGCACGTATGAGAGACTCTGGAGGAGTGTGTGCATTCCTGCAACCGCTTTCttttgtttatgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattaaaagaaaTGTTCGTGTGTGTGACAGAATTCCCTCTGAAGGAAATGAGGGGGATATTatcttggcgtgtgtgtgtgtgtgtgtgtgtgtgtttggagagatgttgatttgctgggTTATAGTTGTTTGACAGTGGCACATCTCACACAATAAAACATCTGCAAGACCAGTCACTCTACTGCGA
>XM_026922331.2
ttattgtttaatccgCCTATGCGAATGGAGAACAGTGTCCCGTGTCGGAAAGTCACCCCTACTCTTTGAGCAAACTGCTAATATTACAGTAGAtcagattatttatttctttcagaGGACATGGGAGGCACAGAAAGCACGGGAAGGAAAGTATCTTTCGGTCTGAATGAAGACGACAACGTCACTGTTTTGCAAGGAATTAAGCTATCTGAAGATGTTCGTCAAAGGATGCGGGAGGCGAGTCAGTCTCCAGAAAAACCACAGTCCCCAAAACCAGAGGGTCGGAAGCCTGAGCCAGCTCCAGGCGGACATTCTTCAGCTGAGATGCCAGAGGAACTAAGAAAACGGTTCGAGCTGGAGCAGGCTCTGCTGAGGGAGGAGTTGGCACGCATCACCCGCAGAGAGAAAGAGTCTGTGGGAGACGATGTGAACCCTGCTGTTCTCCAAGAAAGAGCCAGAACCAAAGAGGAGCAGAAGAATGTGCAGAACTTGCCAGCTGAGCTGAACGCTTGGGCCAAACAGCTAGCGAGGAAAGACGCTGAACTGAAGCATCTGGCTGCATTCTACAAAGAGCAACTGCAGCTCATGGAGAataagaATAAAGAATACTACCAACAGTCAACCCAGATGTACAACGAGGCAGCAACTAAAGCTAGTACCAACATCAAGCCGAAGAATACAGTTCCCATTTGTTCAGAGATGCAGTCTCAGGTACTGAACTGTTTTAAAGAGAACAGACATCAGACTCTGCACTGCTCCAGCCTGGCAAAGGAATATATGAACTGCATTAACTCGGCCAagaagAACATAATGGTCAACCATGGATCAtgaagatgaaggtgatgaCAACAGTGAgcatgaggaagaggaaaagagcGACAGCATAACTCACCACTTGAATCCAACAGTAGAGTTTTTAATGTGCACGTATGAGAGACTCTGGAGGAGTGTGTGCATTCCTGCAACCGCTTTCttttgtttatgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattaaaagaaaTGTTCGTGTGTGTGACAGAATTCCCTCTGAAGGAAATGAGGGGGATATTatcttggcgtgtgtgtgtgtgtgtgtgtgtgtgtttggagagatgttgatttgctgggTTATAGTTGTTTGACAGTGGCACATCTCACACAATAAAACATCTGCAAGACCAGTCACTCTACTGCGA
>XM_026922339.2
tattgtttaatccgCCTATGCGAATGGAGAACAGTGTCCCGTGTCGGAAAGTCACCCCTACTCTTTGAGCAAACTGCTAATATTACAGTAGAtcagattatttatttctttcagaGGACATGGGAGGCACAGAAAGCACGGGAAGGAAAGTATCTTTCGGTCTGAATGAAGACGACAACGTCACTGTTTTGCAAGGAATTAAGCTATCTGAAGATGTTCGTCAAAGGATGCGGGAGGCGAGTCAGTCTCCAGAAAAACCACAGTCCCCAAAACCAGAGGGTCGGAAGCCTGAGCCAGCTCCAGGCGGACATTCTTCAGCTGAGATGCCAGAGGAACTAAGAAAACGGTTCGAGCTGGAGCAGGCTCTGCTGAGGGAGGAGTTGGCACGCATCACCCGCAGAGAGAAAGAGTCTGTGGGAGACGATGTGAACCCTGCTGTTCTCCAAGAAAGAGCCAGAACCAAAGAGGAGCAGAAGAATGTGCAGAACTTGGCCAAACAGCTAGCGAGGAAAGACGCTGAACTGAAGCATCTGGCTGCATTCTACAAAGAGCAACTGCAGCTCATGGAGAataagaATAAAGAATACTACCAACAGTCAACCCAGATGTACAACGAGGCAGCAACTAAAGCTAGTACCAACATCAAGCCGAAGAATACAGTTCCCATTTGTTCAGAGATGCAGTCTCAGGTACTGAACTGTTTTAAAGAGAACAGACATCAGACTCTGCACTGCTCCAGCCTGGCAAAGGAATATATGAACTGCATTAACTCGGCCAagaagAACATAATGGTCAACCATGGATCAtgaagatgaaggtgatgaCAACAGTGAgcatgaggaagaggaaaagagcGACAGCATAACTCACCACTTGAATCCAACAGTAGAGTTTTTAATGTGCACGTATGAGAGACTCTGGAGGAGTGTGTGCATTCCTGCAACCGCTTTCttttgtttatgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattaaaagaaaTGTTCGTGTGTGTGACAGAATTCCCTCTGAAGGAAATGAGGGGGATATTatcttggcgtgtgtgtgtgtgtgtgtgtgtgtgtttggagagatgttgatttgctgggTTATAGTTGTTTGACAGTGGCACATCTCACACAATAAAACATCTGCAAGACCAGTCACTCTACTGCGA

Function

symbol description
chchd6 Involved in cellular response to DNA damage stimulus and cristae formation. Located in cytosol and mitochondrial inner membrane. Part of MICOS complex.

NR:

description
PREDICTED: MICOS complex subunit MIC25

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922322.2 True 1250 mRNA 0.43 9 14496220 14541322
XM_026922331.2 False 1247 mRNA 0.43 9 14496220 14541322
XM_026922339.2 False 1225 mRNA 0.43 8 14496220 14541321

Neighbor

gene id symbol gene type direction distance location
plxna1b plxna1 coding downstream 38988 14278049 ~ 14457232 (-)
trnae-cuc_5 NA coding downstream 103869 14392280 ~ 14392351 (-)
txnrd3 txnrd3,LOC105934676 coding downstream 324164 14158384 ~ 14172056 (-)
LOC113531636 chst13,LOC106565240,LOC104944027 coding downstream 348371 14129841 ~ 14147849 (-)
cfap100 cfap100 coding downstream 451895 14030764 ~ 14044325 (-)
tpra1 tpra1,LOC107666698 coding upstream 3867 14545189 ~ 14554473 (-)
trim107 LOC108271930 coding upstream 16240 14557562 ~ 14560676 (-)
zgc:123305 LOC108271928,LOC107385524 coding upstream 20854 14562176 ~ 14581300 (-)
LOC113529797 LOC108271527,LOC107705866 coding upstream 50083 14591405 ~ 14598546 (-)
dlgap4b LOC108272050,LOC108427631 coding upstream 59341 14600663 ~ 14702035 (-)
G27303 NA non-coding downstream 3381 14492637 ~ 14492839 (-)
G27259 NA non-coding downstream 41929 14444626 ~ 14454291 (-)
G27254 NA non-coding downstream 94791 14354841 ~ 14401429 (-)
LOC117596067 NA non-coding downstream 244956 14238795 ~ 14251264 (-)
G27169 NA non-coding downstream 323299 14172672 ~ 14172921 (-)
G27448 NA non-coding upstream 249109 14790431 ~ 14790641 (-)
G27484 NA non-coding upstream 318683 14860005 ~ 14860246 (-)
G27502 NA non-coding upstream 342933 14884255 ~ 14884487 (-)
G27600 NA non-coding upstream 469003 15010325 ~ 15010661 (-)
G27652 NA non-coding upstream 523563 15064885 ~ 15065211 (-)
G27107 LOC108272123 other downstream 437775 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 589031 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 849043 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 861476 13632262 ~ 13634744 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 994050 13493512 ~ 13502170 (-)
pxmp4 pxmp4,LOC103464829 other upstream 331626 14872948 ~ 14875990 (-)
G27843 NA other upstream 755987 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 915313 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 920628 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 1584508 16125830 ~ 16135715 (-)

Expression


Co-expression Network