ube2c (ube2c,LOC107744406)


Basic Information

Item Value
gene id ube2c
gene name ube2c,LOC107744406
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9978873 ~ 9982851 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922415.2
GGGGAAACGGTTTTGAGAGAGTAAGTTTAAACGGGGGGGCGggatatgatttttaaaatctgactgTGAACTCCGACAGCACTGTTAGCGAAAGCACTGCATAGACCTGACTTTAAAGCCATGGCCTCTCAGAACCTGGATCCTGCTGCAGCTTCTTCTACAGCCGCCTTAAAAGGAAACGAAACAGCCGGAAGTGTGTCGAAGGGCTCCGTTAGTAAgagGCTTCAGCAAGAGCTCATGACGCTCATGATGTCAGGAGACAAGGGAATTTCAGCATTCCCAGAGTCTGACAATCTCTTCAAATGGATTGGCACGATAGATGGCGCACAGGGAACAGTGTATGAAGGTTTGAGGTATAAGCTCTCATTGGAGTTTCCTAGTGGATACCCCTACAACGCTCCTCGGGTGAAATTCATCACTCCTTGCTTTCATCCAAATGTCGATGAGAATGGGTTTATTTGCTTAGACATTTTGAAAGAGAAATGGTCTGCTCTCTATGACGTTCGATCCATTCTGCTGTCCATTCAGAGTTTACTTGGAGAACCCAACAATGATAGCCCTATGAACTCTGCAGCTGCAGAATTATGGGATAACCAGGAAGCCTTCAAAGCCCATTTGCACTCAACCTACAAGAATTGACCGACAAAATTGGGCACTCCTGCCTCTTCTCTTTTATCTCACTGTGTGAcctcatttctttatttttgcccatgactatgtaaatttaaatgctGAGTCTGTTTCTGTACAATATTTGTATGTTGAATAAGCCTGTCTCAATAAAATGCCATTCAGTAGGTGGA
>XM_034310863.1
ATGTGTCTGAAACACGGACAGAAATCGACTATCAAGAAGTAAATCGAAAGCTGATAGAAATAAATGGTGCTAGGGTTCGCCAGTTAGCCAAACTaagctttttaaatgttaaattaaagaaCCTCGAGAGCAGACTTTAAAGCCATGGCCTCTCAGAACCTGGATCCTGCTGCAGCTTCTTCTACAGCCGCCTTAAAAGGAAACGAAACAGCCGGAAGTGTGTCGAAGGGCTCCGTTAGTAAgagGCTTCAGCAAGAGCTCATGACGCTCATGATGTCAGGAGACAAGGGAATTTCAGCATTCCCAGAGTCTGACAATCTCTTCAAATGGATTGGCACGATAGATGGCGCACAGGGAACAGTGTATGAAGGTTTGAGGTATAAGCTCTCATTGGAGTTTCCTAGTGGATACCCCTACAACGCTCCTCGGGTGAAATTCATCACTCCTTGCTTTCATCCAAATGTCGATGAGAATGGGTTTATTTGCTTAGACATTTTGAAAGAGAAATGGTCTGCTCTCTATGACGTTCGATCCATTCTGCTGTCCATTCAGAGTTTACTTGGAGAACCCAACAATGATAGCCCTATGAACTCTGCAGCTGCAGAATTATGGGATAACCAGGAAGCCTTCAAAGCCCATTTGCACTCAACCTACAAGAATTGACCGACAAAATTGGGCACTCCTGCCTCTTCTCTTTTATCTCACTGTGTGAcctcatttctttatttttgcccatgactatgtaaatttaaatgctGAGTCTGTTTCTGTACAATATTTGTATGTTGAATAAGCCTGTCTCAATAAAATGCCATTCAGTAGGTGGA

Function

symbol description
ube2c Predicted to enable DNA binding activity and nucleosome binding activity. Predicted to be active in nucleus. Orthologous to human UBE2C (ubiquitin conjugating enzyme E2 C).

NR:

description
ubiquitin-conjugating enzyme E2 C-like

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06688 UBE2C, UBC11; ubiquitin-conjugating enzyme E2 C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922415.2 False 803 mRNA 0.44 7 9978873 9982851
XM_034310863.1 True 827 mRNA 0.43 7 9978873 9982280

Neighbor

gene id symbol gene type direction distance location
LOC113530316 LOC108271764 coding downstream 24728 9942055 ~ 9954145 (-)
csrp1b csrp1,LOC108441585,LOC104918388,LOC101487148 coding downstream 222277 9752621 ~ 9756596 (-)
tnni1b tnni1,LOC106582713,LOC106566026,LOC103040607 coding downstream 229109 9743031 ~ 9749764 (-)
sys1 sys1,LOC107587582,LOC107744372,LOC106565403 coding downstream 391555 9583921 ~ 9587318 (-)
snrpc snrpc,LOC107587645,LOC107696417,LOC107666039 coding downstream 401885 9570763 ~ 9576988 (-)
LOC113534196 dnttip1 coding upstream 214 9983065 ~ 9992886 (-)
pcif1 pcif1,LOC107666074,LOC107696439 coding upstream 11498 9994349 ~ 10006093 (-)
ctsa ctsa,LOC107587598,LOC107696438,LOC107744356,LOC107666023,LOC107560512 coding upstream 42573 10025424 ~ 10033450 (-)
slc12a5a slc12a5,si:ch211-59d13.2,LOC107744354 coding upstream 61911 10044762 ~ 10198391 (-)
LOC113532087 LOC108271496 coding upstream 231057 10213908 ~ 10219381 (-)
G24572 NA non-coding downstream 39830 9938256 ~ 9939043 (-)
G24268 NA non-coding downstream 303134 9675522 ~ 9675739 (-)
G24260 NA non-coding downstream 342354 9635854 ~ 9636519 (-)
LOC113532556 NA non-coding downstream 357914 9615587 ~ 9620959 (-)
LOC113532571 NA non-coding downstream 363290 9612380 ~ 9615583 (-)
G24611 NA non-coding upstream 168966 10151817 ~ 10152165 (-)
G24617 NA non-coding upstream 178181 10161032 ~ 10161241 (-)
G24620 NA non-coding upstream 185360 10168211 ~ 10168469 (-)
G24623 NA non-coding upstream 188119 10170970 ~ 10171175 (-)
LOC113534445 NA non-coding upstream 983845 10966696 ~ 10984007 (-)
G24516 NA other downstream 110595 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 252822 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 537028 9435506 ~ 9441845 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 1494692 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 1627179 8343624 ~ 8351694 (-)
G24760 NA other upstream 506442 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 933191 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 1459620 11442471 ~ 11485469 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 1703894 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 3510661 13493512 ~ 13502170 (-)

Expression


Co-expression Network