gli1 (gli1)


Basic Information

Item Value
gene id gli1
gene name gli1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11618971 ~ 11660989 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922964.2
aggaggaggagggggactCGGCGCTCAGCTCGCATGCTCGCGCTACCTCGAAAACTTCGGGCTCGCTGGAGCAGGATACCCAAAATGGAGCTCAAGTTTACCGCTCACTCCAAACTCCAACTTTAGGGGAAACTTCTTCTGGATGTGTTTTTTGTCCCGTGTGTGTGGAGTGGAGGACTGCGTGCTGGAGTGAGGTGAACATTTGAAGTTCACGCGCCTGGACTCTCcatctgtgtgcgtgtgttcagCAGGAGAAAAAGAGGGGCTTTATTGGAAATTCTCAAACCCCCGGTGGGACGCGCTCAGCTTTCAGCTTCAGCTCTGCATTTTCCTCCTTCTTTCCAGGGAAAGCtgaggtttttgtttgttttttggcagGGAAAAGTTTAGGGCCACACAAACTGATGCGGACAGCTCGGGAATCTGAAAGGGTCCTACAGGACTAGCAGGAGTGCTGGCCCCAATGCCAGTGGTCATGCAGCCTCACCACAGGCTGTATCACTACAACAACACCAGTCAACCAAGCAAAGGTCTGGCGCCATCAATAAAATCACCCTACAGTGAGGTATCTCCTGTGTGTGGTGCTCCCCCTTGTGGTCAACCTCCAGAAAGCAGAGCAATGTACAATCCATCCTTCAACCCTGGAACCTGCATGGATCCTTACATGCGGCCTCCGCAAGGACACCCACCCCATGGCATGATGGGACACCGTGGCATGCCCCCACCTGAGGgaGGTAATGGTACCCCCTACTGTAGCCAGAGTAACACAATGTCAGCGCATCATGGCTTTCCTCACAACCAGTCAGGCCCAGAACACTTGGGTTCAGGAGACGGTTCTCGTTTCTCCACTCCTCGTTCCATACTGAAGTTGAGCAAGAAGCGAGCACTGTCCATCTCTCCTCTGTCTGATACAAGCGTGGACCTGCAGACAGTCATTCGCACATCTCCCAACTCTCTGGTGGCATTTGTTAACTCTCGCTGTGGGCAAAATGCTGCAAGCTCATATGGACACCTATCTGTGGGAGCTTTGAGTCCATCGATGGGTTACTCAAGCTCAACAAACTACCAGTCCAGGCCTCAAGGGAACATGTACGGAACGCCGCTTGGCCACACCCCTGCTCCCTGCCATGGACCCCCAACTCGCCTTCCTCCTCACAACCCCCGTCTGCATGCACCTCCAAAACATGGACATcTGAAGGCAGAACCCATCATAGGTAATGTGATGGATGGCATTAATGTGAAGAGTTTAGAAGAGCATTCAGAAGGAGATGTGGCCAGTCCATCTTCCACTGGAACTCAGGATCCTCTTCTTGGGCTTCTGGAGGGCAGAGATGATTTGGATAAAGAGGAGAAACCAGAGCCTGAGGCCGTCTATGAGACCAACTGCCACTGGGAGAGCTGCAGCAAGGAGTTTGACACCCAGGAACAACTTGTGCATCACATCAATAATGAGCATATCCATGGTGAGAAAAAAGAATTTGTGTGCCACTGGAAGGACTGCTCTCGTGAGCAGAGACCATTTAAGGCTCAATATATGCTGGTGGTACATATGCGTAGACACACTGGCGAGAAACCTCACAAGTGCactTTTGAGGGTTGCAACAAAGCATACTCTCGTCTGGAGAACCTGAAAACACACCTGCGCTCACACACTGGTGAGAAGCCATATGTATGTGAGCATGAGGGATGTAACAAGGCTTTCTCTAATGCCTCAGACCGTGCAAAGCACCAGAACAGGACACACTCCAATGAGAAACCCTATGTGTGCAAGATCCCTGGATGTACAAAGCGTTACACAGACCCAAGCTCCCTACGCAAGCATGTAAAGACAGTTCATGGACCTGAGGCTCACATAACTAAGAAACACCGTGGTGACACTGGACCTCGACCACCAGGTTCTGCTCTGACCTCTGCAGGTCAAAGTTCAGAGCTGATGGTAGAAAAAGAGGAAAGGACCAGAGAGGATTGCAAACTTCTGGCTCCTGAAAATACACtaAAGTCTCAGCCAAGTCCTGGAGGCCAGTCATCCTGCAGTAGTGAGCGCTCTCCATTAGGGAGTGCAAACAACAACGACAGTGGTGTAGAGATGAACCTGAATGCAGCAGGAAGTCTGGAAGACCTGACAGCAGTGGAAGATGGAGGGGGAACCAGTGTGGCTGAGTCTAATGGGGGAGTGGGTTCTGGGGGTATGGGTATGTCTGCACAGGCCCTGAAGAGGCTGGAGAACTTGAAGATTGATAAACTAAAACAGATCCGCAGGCAGACCCCACCAGGCCGGGGCACAGTAAATAAATTACCAGCACTTTCAGcATCAGGTGAGATAATCGGCATGTGTGGCCCCTCCCCTTTGCTTTCTAATCGTCGTGTGATGGAGCTCTCTACCCCAGACCTGGGTGGAGGTGGTATAGGGGGAATCGGCAGAATGGTTATGCCTTGCCCACCCAGTGACCGCCGTGGAAGTGGTACCAGTAGTTTAAGCTCCGCCTACACTGTGAGCCGTCGTTCCTCTGTGGTTTCCCCTTACCTATCAAGTCGACGCTCAAGTGAAGTATCTCAGGTGGGCACAGGTGGGCATTGCCAGTCTGTCATTGGAAATGATGTGGGTGGGGACCCATTATCACCCGAGACCAGCCACAGAACTGGTTTGTGCCAGAGCACCAGTGGATTGCCAGGTCTACCATGTCTTACAGCTGCAGAACAATACAGTTTGAAAGCTAAATATGCGGCAGCAACTGGTGGACCACCGCCAACACCTCTACCCAATATGGAGCAGCCTGGTACCCCCAGCAGACGAAGTGGTTTCTTGAGTGAATATGACGGTCAGCCACTCCCACCATTCCTTCATCAAGTGGGAACCAGGAGACACAGTGCCAACACCGAGTATGGAACAGGCGTTATTTATCCACACCAGGCTCCTGGCAACAACATGCGACGTGCCAGTGATCCCGTGCGCTCTGGAGCTGACCCACAAGGCCTACCCAAAGTGCAGCGCTTTAACAGCCTGAGTAACATGACATTGATGGGCCGTCGTAATGCCTTGCAGCACTGTGGGTCTGATGCCAATGTCACCAGACACATGTATTCACCACGACCGCCAAGTATTACTGAGAACGTGATGATGGAGGCCATGGCAATGGAGCCTCAGAGGAATACCACAGAAGGCCGGGATCACGGAAGCATGATACAAGGTGCAGACAGGGCCTACATGGGCTACCAGCAGTCTCAGTCCCATCCTCGTACTGGTGACCAGCTTTCTCCTGGGAATGAAGGCATGGGATGCTTGGATCCTTCCTACCAGTCACAGATGCAGGGGCAGTACCACAGTCAACGTGGGAATATAGGTGTTGGAGAAACTATGGGTCAGAATGAGATTTCAAATACTCTCCTCCAGCAAGCCGAGTACAGTATGAGCACCTGTCAGCTCAGCCCCTCTGGGCCACACTACCCTGGCCTGGGGCAGCCTAGTGAGGGATCAGGACCCTGGGGACAAAATGGCCAGCTCCACAATCCTCATGTGGGTATGCAAGCAGCTATGCAGTTCCAAGACGCAGGATTGCAGGGACAACAGTATTCTCAAGGTTTGTATGATCCCAACACTGATCCTAACCATCAGAGGGTCACTATCAAACCAGAACAGTTCCATCCACCCATGGGAGGCTCCAATGCCTGCCAAAATGCCAAGGCTCTTCAACAGCATTGCCAGCCTAGCACTATGGAGGTATGCCAGCAAGGGTACGCACCACAGACAAAAGAGCATGGTTTAATCAGCAAATCTTCCAACCCCAGCTGTGACTTTGTCCATGGTCAGATCAAGACCCAGACTgatcatcatcaacaccaaaGCCAGGCTGGATCATTTCTCCATGGGGGAAGCTTGAGTCTCGGCTGTGCTGGCTCTGTGCTGGCTGAGGACCGGAGGTCACAGACTCCAATGCTGCAGGTGAAGGAGATGATGGTACGAAACTATGTGCAATCACAACAGGCACTCCTTTGGGAGCAGCAGCAAGAGCAACAAACAGCAAATAGTAGTCTCCCTCGGAAGCCAGAAAGCATGGAGTTGGGAGCACAGACAGCACTGATGCAGCATAGTCCTCAAGATCAGCAACTAAATCAAAACATCTACCATAACAGTTACCAGGGCTACTCAAATCAGAATGTCATGAGTCCCTCAGGACATAGTCAAGCATCCAGCTCAGTGCCAGTCAAGGAACAGATGGCTGGCATGCAGGATTCTTCCTACAGTCATGATATGGTGCCACATCCACCTCAGGGTCGAAAGCCTCTGAGTCGCCAGAGCAGTCTTTCCCAGAAGGCAAATGGAGCATACCTAAGCAGCCCACCTAATGTAAGTCCTGGTCATTCTACTGCCAGTCCCAGAAGAAGTGTCAGGTTACCACCTGTTCATCAACAGCAGCAACACACTGATAATTTCTATTACTCAGGCCAGATCCACATGCACCACAACATGGATAAGTCTCTGGAAGCCCATGATGGATCCTGCCGGACCCAGCAGCACCTTGCTGGAATAGAGCCTTCAACAAAGGCTGCTTCAGTGGCATATCCCCAGTCTGCATCTATGTCAAATACGCTTGAGAACTTGGACTTGGAGAATGCTCAGATTGACTTTGCTTCCATCATTGAGGATCCAGATCCTTCATCTTACAGCCCAGTAAATCCAGTTCTGGGCCACCAATCATCCTCCCAGGCCTCCTCCCGTCTTACCACTCCGCAAAACTCCATCACCCTTCCCTCCAACCTATCTAACATGGCCATTGGAGATATGACCTCCATGCTGACATCCCTTGCTGGGGAGAACAAGTATTTGAACACAATGACTTAAGAATAGCTTTACATGTTTCAAAGGGTTGTAAGGCATAGACTATCATTCTGGCTATATCAACATCCAATTGACTAATTAGATTCCTGATAAATGCATTCAGTGAAACAGTGGTTTCTGTGGACCTTCCTACACTCGCTGTCGAGTCTTACTAGATGGGCCAGGTTTCTATAGAGGCGTGATTCTGCTTCTctgtttccatttgtttttgttttatttgtttaataaacattgCCTTGGGTTTTATTATCAAGACTAAAATGGTATTTCAGTTGCCATGCTGGGAGGGTTagtaaaaaaacactttgtttaaatgtaaataccTTTTACCTTTATATTAGCAATGGAATTTAAACTGAGACAAtgatagaagaaaaaaaactatcttctgcattataaaatatatgatgaCTAGGAAGAGTTAGAGAGAGCACATTTCCTTTCTGAGGTACTAGAAAAGCTCAGTTATAATAAATGGTAGAACACGTCTGAAGTGCCTTTGCCTATTGTGGCTAATGACTCTCTACATGTGCATTAGTGTTATCATTTTAGAGAGTGACAGTCAGACAGGTCAGAGAACAAAACCCATAATGACCAGTCATAGTGCCTATGTGCAGTGCAGTATTCAAAGCCTTATCAGTAGTTATTTTTGATGATTATTATTCAAGTGAATGTGGCAAAACAGAAGACCTATGGTTGAACCCATTGGAACCCATTTGATTTAAATGAACTTttcctgtttgtcttttttttttttttgcctattcGTATTCAAACAGGTATCTTTAGTCAAGTGGCactgattataattttttaaatgttacccTCCTTTAAAGGCCTGGATAGACTAAGCCAATTTCGTCTGACCCCacagttgtttttatttgaaactCCAATTTCTAAAAGTAAATGTAGACCACTCACCTAatagacatttacatttctgtagTATTTCCAGGCCTTAAATTGCACCACATCATGTAAACTTAATATTGCACTGACAACAGCACtgagctgaatttttttgttttgggtcTTATAGTACAGTATATGATATTGCATTCAGGCAGTATCCAGCTGACAAACTAAAGGACATAATGTCCTTTGTTTTAGCACATTTATGCGATGCCTCACAATGGTGTGAAGGACTCATTTAAGTATTGAAAACAACCATATCCCTGTGCTTCACTACAGCTGTTCATGGCATACCAAAGATGATTAGCACTGGGAAGAGTGCATGTGCACCCTTCAGTATCAACATTAATACAGTCATGTCGCCATGCCTCTATAGTGCTGCAATAGAGAATGTAAGTTTTCTAACattcttttttaagaaaaaaatagttttgtgGATTTTGCATTTCTCTGTGTGTTGTTCTGGCATCtgtcacgttttttttttttttttgctggcaAAAGAGAATTTAATGTAGCATTGAAAATTCATGGTATTAGCAGTTATTACATCTATATACAGGAAATCAAgtgatatattttttgcataccattttctacatttttatacaaaGTAAAGGTACTATATTCTAcctgtttattaataaacatggcCTGTGATGGAA

Function

symbol description
gli1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including muscle cell fate specification; nervous system development; and positive regulation of smoothened signaling pathway. Located in chromatin. Part of Hedgehog signaling complex. Is expressed in several structures, including central nervous system; head; neural plate; neural tube; and paraxial mesoderm. Orthologous to human GLI1 (GLI family zinc finger 1).

NR:

description
zinc finger protein GLI1-like isoform X1

GO:

id name namespace
GO:0021521 ventral spinal cord interneuron specification biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0042476 odontogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0045880 positive regulation of smoothened signaling pathway biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0021508 floor plate formation biological_process
GO:0035301 Hedgehog signaling complex cellular_component
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K16797 GLI1; zinc finger protein GLI1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922964.2 True 6417 mRNA 0.47 13 11618971 11660989

Neighbor

gene id symbol gene type direction distance location
LOC113531982 LOC108272195 coding downstream 6676 11586904 ~ 11612295 (-)
mars1 mars coding downstream 82933 11522121 ~ 11536038 (-)
mbd6 mbd6 coding downstream 104341 11500588 ~ 11514630 (-)
soat2 LOC108272126,LOC108431801,LOC107734612,LOC107681296 coding downstream 177578 11428806 ~ 11441393 (-)
tox2 tox2,LOC107681298,LOC107666148,LOC106565275 coding downstream 449921 11069885 ~ 11169050 (-)
rbm19 rbm19,LOC100304870,LOC107666967 coding upstream 321973 11982962 ~ 11994574 (-)
epha2a LOC108271798,LOC108427555 coding upstream 335974 11996963 ~ 12008819 (-)
LOC117596078 NA coding upstream 365739 12026728 ~ 12028660 (-)
tardbp LOC108271795,LOC108427558,LOC107555974,LOC107713527 coding upstream 374643 12035632 ~ 12041298 (-)
ca16b LOC108272134 coding upstream 382640 12043629 ~ 12125659 (-)
G25478 ddit3 non-coding downstream 84446 11517488 ~ 11534525 (-)
G25484 NA non-coding downstream 118463 11499245 ~ 11500508 (-)
G25476 NA non-coding downstream 160781 11457974 ~ 11458190 (-)
G25320 NA non-coding downstream 289415 11326826 ~ 11329556 (-)
LOC117599085 NA non-coding downstream 356667 11257764 ~ 11262304 (-)
G25553 NA non-coding upstream 36090 11697079 ~ 11698078 (-)
G25570 NA non-coding upstream 76578 11737567 ~ 11738741 (-)
G25575 r3hdm2 non-coding upstream 91498 11752487 ~ 11772290 (-)
G25723 NA non-coding upstream 276626 11937615 ~ 11937803 (-)
LOC117596184 NA non-coding upstream 551999 12212988 ~ 12214802 (-)
kif5ab kif5a other downstream 133502 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 684807 10916042 ~ 10934164 (-)
G24760 NA other downstream 1128676 10489293 ~ 10490295 (-)
G24516 NA other downstream 1750693 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 1892920 9715516 ~ 9726051 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 25756 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 1832523 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 1971273 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 1979392 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 2203955 13864944 ~ 13907189 (-)

Expression


Co-expression Network