LOC113532087 (LOC108271496)


Basic Information

Item Value
gene id LOC113532087
gene name LOC108271496
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10213908 ~ 10219381 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923241.2
CGTGAATCCATAAATGAATAGTGGGCAcgtgctccctctctctctctctctcccctctctctctcttttgcaaGCCCTGCTTCTGATTGGTCCCGtgtctaacagtcacaaacacCACTAGGATATATATTGTAACACGAGTCAGGCATTTAAGACAAAAGCAGCTCAGGAACAACTTTACGCACGATCAAGGTGAGACAGCAGAGATCCAGGCTACGATGAGAGCGCAGATTCAGAAAGCCCCAGCGCAGATCCTCGAGgtgctgaagaagaagaagtcggTCGGGCTGCAACACTGCAAGCCAACATCCTCGGTGTGTGTGCTGGACTCGAAAGATGCTGCGCCCTGCGCTGGACACACTGTCCAGTCCATCCCAGGCCCAACCAGCTGGCCCCTGCTGGGGAACCTCATCGACATCCTGCGGAGAGGAGGCTTAGAAAAACAACACCAGACAGTGatggaTTACCATAAGAAATTTGGCAAAATCTTCCGGATGAAAATGGGCTCGTTTGAATCAGTGAACATTGGCGCGCCTTGCTTGCTGGAAGCTCTGTACAGGAAGGAGGGGAACTATCCCCAGAGACTGGAAATTAAACCCTGGAAGGCATACAGAGATCTGCGGGACGAGGCTTATGGACTTCTCATCTTAGAAGGAAAGGACTGGCAGAGAGTGAGGAGCACATTTCAGCAGAAATTCATGAAACCAACTGAAGTTGTGAAACTTGATGGGAAAATTAATGAGGTTTTAGTCGATTTCCTTAACCGGATTGGACAGGTTAATGTGAACGGGAGGATCAATGACTTGTATATTGAACTGAATAAGTGGTCCTTTGAAACAATTTGTTATGTGCTCTATGACAAACGATTTGGGATTTTGCAAGAAAACGCCAATGACGAGGCAACTGACTTTATCACAGCGATAAAAACGATGATGAACATGTTTGGCAAGATGATGGTGACTCCAGTTAGTCTCCACAAGAGCCTGAACACAAAGACATGGCAAGACCACACAGCTGCCTGGGactgtatttttaatacagcaaaaatCTACATTGACAAGAAGTTGAAGAGACACTCAAGTGGAGAAACCGATGGCTTCCTTAGTGATATCTACCATAACTGTCCCCTCACCAAGAAGGAGCTGTATGCAGCAATAACTGAGCTCCAGATTGGGGGTGTGGAGACAACTGCCAACAGTGCATTATGGGCTATTTTCAACCTCTCACGGAACCCCCATATTCAGGACAAGCTGTTGAAGGAGATTAGAGAAGTGGTGCCCCCTGGACAGGTTCCATGTGCTGAGCATATTAAGAAAATGCCATATCTCAAGGCATGTCTGAAGGAGTCCATGAGACTTTCACCCTCCATCCCCTTTACAAGCCGAACTTTGGACAGAGACACTGTGCTCGGGGAATATAGTTTGCCTAAAGGGACAGTTTTGATGATTAACAGCCAGGCACTAGGGTCTAATGAGGAGTACTTTGACAATGGGAAGCAGTACATGCCAGAGCGGTGGCTCGAGAACAAAACCTCTATCAATCCATTTGCATATGTACCTTTTGGCATCGGCAAGAGGATGTGCATCGGCCGGCGCCTGGCTGAGCTACAGATACAGCTCGCTCTGTGCTGGTTAATTCGTGATTATGAGATTGTAGCAACAGATTATGAGCCAGTGGAATCCGTACATACCGGAACACTGGTACCCAATCGAGAACTTCCTGTGGCTTTCATCCGTCGATAAGACTGCTTCAAAATCAGGTGGAAACAGAAAACTCCATAGCCTTTGGCCAGAAGGCTCGATTTTGCTGCTACTCTGCTGCTAAACATCAGAATGTATTGATCTGATTACTTAAGATATACCTCAgataattatttgtaaatgtaattgtaacTGATTagaataaacataaatgtacaTGCAGTATATTCCATGTGACGATATATTTTAACGTCATAGTAACATCACTACCTATCAGTTTAGATGACCAAACTGAGTCATTAAAAAATCAGTTTCATAATGCTGGTGACATACTACCTATAAAGAATTCTTTTGTAACCTGACATTTAAAATTCCATATTATATGTACACTAAAATCATTCAATGTACTATAGCCTTAGAGTATGTGTAAAACTATGTAAACTATGTAAAGCTTGGAGTGTCTGCAAATAGTGGTCttatatatgttgtatataGGTTAAATATATCACAAAGGTAATGCTATTTATACTTAAACATTACAATGTTagcaatgtatttttttaaatgtatctgTAACATCtttgggaaataaataaataaatacaaaaatggc

Function

NR:

description
PREDICTED: 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07436 CYP24A1; vitamin D3 24-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923241.2 True 2313 mRNA 0.43 12 10213908 10219381

Neighbor

gene id symbol gene type direction distance location
slc12a5a slc12a5,si:ch211-59d13.2,LOC107744354 coding downstream 15517 10044762 ~ 10198391 (-)
ctsa ctsa,LOC107587598,LOC107696438,LOC107744356,LOC107666023,LOC107560512 coding downstream 180458 10025424 ~ 10033450 (-)
pcif1 pcif1,LOC107666074,LOC107696439 coding downstream 207815 9994349 ~ 10006093 (-)
LOC113534196 dnttip1 coding downstream 221022 9983065 ~ 9992886 (-)
ube2c ube2c,LOC107744406 coding downstream 231057 9978873 ~ 9982851 (-)
eya2 eya2,LOC107666141,LOC106565282 coding upstream 21873 10241254 ~ 10259219 (-)
gcnt7 LOC108272018,LOC108272017 coding upstream 116012 10335393 ~ 10339327 (-)
LOC113532783 cdh22,LOC107553911,LOC107666158,LOC107587604,LOC107681302 coding upstream 333530 10552911 ~ 10743445 (-)
znfx1 znfx1 coding upstream 655543 10874924 ~ 10885023 (-)
ddx27 ddx27,LOC107553908,LOC107587605,LOC107681294 coding upstream 669031 10888412 ~ 10903945 (-)
G24623 NA non-coding downstream 42733 10170970 ~ 10171175 (-)
G24620 NA non-coding downstream 45439 10168211 ~ 10168469 (-)
G24617 NA non-coding downstream 52667 10161032 ~ 10161241 (-)
G24611 NA non-coding downstream 61743 10151817 ~ 10152165 (-)
G24572 NA non-coding downstream 274865 9938256 ~ 9939043 (-)
LOC113534445 NA non-coding upstream 747315 10966696 ~ 10984007 (-)
G25184 NA non-coding upstream 802142 11021523 ~ 11021725 (-)
G25185 NA non-coding upstream 803058 11022439 ~ 11022641 (-)
LOC117599085 NA non-coding upstream 1038383 11257764 ~ 11262304 (-)
G25320 NA non-coding upstream 1107445 11326826 ~ 11329556 (-)
G24516 NA other downstream 345630 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 487857 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 772063 9435506 ~ 9441845 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 1729727 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 1862214 8343624 ~ 8351694 (-)
G24760 NA other upstream 269912 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 696661 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 1223090 11442471 ~ 11485469 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 1467364 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 3274131 13493512 ~ 13502170 (-)

Expression


Co-expression Network