tgm5l (LOC108272022)


Basic Information

Item Value
gene id tgm5l
gene name LOC108272022
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14862967 ~ 14869703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923663.2
aCAGACTCATGGAGGgtttgaAACTTATGTATGCTAGCCTGGAGGAAGCTCAGAACCATGTGTGGCACAAGACAGAAGGGCTAAACTCCACTTCTCTGGTAGTGAGAAGGGGACAGCCCTTTAGACTCACACTGAGCTTCAATAGACCTTATATGTCAAGCAAAGATGACCTCATGCTCAGGATAGAACTAGATCGCCTTTACTGTGACATTCCCATCACATCCTCAAAAGCCACATCTCAATCCCAGTGGTCTGCCTACTTTCTGCAGGGCATGCTGGACCCCAGTGCCCCTCACAaggcttctgtgtgtgtgtacagtccgCCCACTGCTATCGTGGGAGTGTATCATCTCCATCTGTTGTTCATGTCTCGCTATGGCTCTTCCAGCCGCAGGATTGGACAATTGACCCTGCTGTGTAATCCATGGTGCACAGCTGACTCTGTCTACTTGCCTGAAGAAAATCAGAGGGAAGAGTATGTGAGGAATGACTTTGGCCTGCTGTACCAGGGCACAGCCAAAAACATCAGCTTTAGGCCATGGGGCTTTGATCAGTATGAGAGTGGTATCTTGGAGATCTGTATGATGATGCTGCAGGTGAGCAATGAACACAAGAAAAACTGGAAGAGTGATTATGCTAATCGCTCTGACCCTGTTTACATCAGCAGAGTTGTCTCAGCTATGATAAATAGTAATGATGACTGCGGTGTGCTGCAAGGGAATTGGTCGGAGGATTACAGAAGTGGTGTCAACCCGTCAGAGTGGACAGGCAGTGGAAGCATTCTGAAACAGTGGGCCAAATCTGGCTTCAGCCCTGTGAAATATGGACAGTGCTGGGTTTTTGCTGCTGTCATGTGCACAGTAATGAGAGTCCTGGGAATCCCGACTCGTGTGGTCACCAACTATAACTCGGCTCATGACACTAATGGGAACCTGGTGATTGAGGAGTATTACACTGAGAAAGGGGAAAAGCTGCCTCATAATCGTGACAGCATCTGGAACTTTCACGTGTGGGTGGAGTGCTGGATGAAGAGAGGAGATCTAAGAGCAGGATTTGATGGCTGGCAGGTGGTTGACCCCACTCCACAGGAGAGAAGCAGAGGAGTATACAGGTGTGGTCCTGCCCCAGTAAAAGCCATTCGGGAGCGTCAGATCGACATGGCCTATGATGTCCCATTCATCTATGCTGAAGTtaatgctgatgtgtgtgtgtacattgtgCGCCAAGCACAAGTATTGAACTACgccactgagacagacagagttgGTGTTCTCATATGCACCAAGAGCCTGGGATCCAACCAACCACAGGATATCACTTCTAcctacaaacacaaaaaagCTCTACAGCCATCTGTCAGATCAACAAGTCCAATGCCAGGACCACGTCTAGCCAACAACCATGGATCAGCAAAAGGTCTTTCTGTACGTCTGAGCCTCATTAAAGCACCTGTTGTTGGAGAAAATATCTCCTTCTCAGTCACTGTGACTAATCATGGCAGTGTTGTGAAGACAGTGAGAGAATACGTCAATGCTCAGGCAAAGAGCTATGACCACAGTCCATCTGATACCTTCTGGGAGGCCGATAAGATCATCCAGCTTGCTCCTAATGGAAGTAAAGTGCTACAGCACCAGATCTCATACAGTCAGTATTCAGCACTGGGGAATGAGCAGCTAGTCAATTTGGCAGTGGTCGTAATGGATGTGGCCACTCAGGAGAGAGTCCTGGCTTCTGAAGAGTTTAACATCACCAGCCCAATCATCCACATAAAGGTTGCTGATGAGGATTCTATCATTGCCCGCCGACACCAGGTTGCTATGGTGACATTCACCAATCCGTTCCCTGTGGCAGTGAGAGGCACGTTGACTGTAGCAGGTTCAGGCCTGCTGGAGGACAAAGTGCTCATCAATGTTGCACTTCTGCAGCCCAGAGAGACCATGAACACTGTGGTACGCTTTACACCAAAGATGGCAGGAGTGAAGATGCTGCACGCAAGACTGAGCCTGGATATCAACCGCATTGTTATCCGTGGCTTCAGAACCATTACAGTCCGACCAGCATGAAAAGGGAAATCAGAACCAAGTACCAGAGCCACTGATTGTAAGATGTTTATCTGTTTGAATAGTAACTATACTTGAAGAAACTAATATGAAACTCTGTAACTATGtgaaattgtattatttatttatttattgcagtgtTTTTCTAACTATACTCATTGTGCTGATAACAAAGTGATGTAAGTTTATCTATGGCCagcattttcaaatatt
>XM_026923672.2
aCAGACTCATGGAGGgtttgaAACTTATGTATGCTAGCCTGGAGGAAGCTCAGAACCATGTGTGGCACAAGACAGAAGGGCTAAACTCCACTTCTCTGGTAGTGAGAAGGGGACAGCCCTTTAGACTCACACTGAGCTTCAATAGACCTTATATGTCAAGCAAAGATGACCTCATGCTCAGGATAGAACTAGATCGCCTTTACTGTGACATTCCCATCACATCCTCAAAAGCCACATCTCAATCCCAGTGGTCTGCCTACTTTCTGCAGGGCATGCTGGACCCCAGTGCCCCTCACAaggcttctgtgtgtgtgtacagtccgCCCACTGCTATCGTGGGAGTGTATCATCTCCATCTGTTGTTCATGTCTCGCTATGGCTCTTCCAGCCGCAGGATTGGACAATTGACCCTGCTGTGTAATCCATGGTGCACAGCTGACTCTGTCTACTTGCCTGAAGAAAATCAGAGGGAAGAGTATGTGAGGAATGACTTTGGCCTGCTGTACCAGGGCACAGCCAAAAACATCAGCTTTAGGCCATGGGGCTTTGATCAGTATGAGAGTGGTATCTTGGAGATCTGTATGATGATGCTGCAGGTGAGCAATGAACACAAGAAAAACTGGAAGAGTGATTATGCTAATCGCTCTGACCCTGTTTACATCAGCAGAGTTGTCTCAGCTATGATAAATAGTAATGATGACTGCGGTGTGCTGCAAGGGAATTGGTCGGAGGATTACAGAAGTGGTGTCAACCCGTCAGAGTGGACAGGCAGTGGAAGCATTCTGAAACAGTGGGCCAAATCTGGCTTCAGCCCTGTGAAATATGGACAGTGCTGGGTTTTTGCTGCTGTCATGTGCACAGTAATGAGAGTCCTGGGAATCCCGACTCGTGTGGTCACCAACTATAACTCGGCTCATGACACTAATGGGAACCTGGTGATTGAGGAGTATTACACTGAGAAAGGGGAAAAGCTGCCTCATAATCGTGACAGCATCTGGAACTTTCACGTGTGGGTGGAGTGCTGGATGAAGAGAGGAGATCTAAGAGCAGGATTTGATGGCTGGCAGGTGGTTGACCCCACTCCACAGGAGAGAAGCAGAGGAGTATACAGGTGTGGTCCTGCCCCAGTAAAAGCCATTCGGGAGCGTCAGATCGACATGGCCTATGATGTCCCATTCATCTATGCTGAAGTtaatgctgatgtgtgtgtgtacattgtgCGCCAAGCACAAGTATTGAACTACgccactgagacagacagagttgGTGTTCTCATATGCACCAAGAGCCTGGGATCCAACCAACCACAGGATATCACTTCTAcctacaaacacaaaaaagCTCTACAGCCATCTGTCAGATCAACAAGTCCAATGCCAGGACCACGTCTAGCCAACAACCATGGATCAGCAAAAGGTCTTTCTGTACGTCTGAGCCTCATTAAAGCACCTGTTGTTGGAGAAAATATCTCCTTCTCAGTCACTGTGACTAATCATGGCAGTGTTGTGAAGACAGTGAGAGAATACGTCAATGCTCAGGCAAAGAGCTATGACCACAGTCCATCTGATACCTTCTGGGAGGCCGATAAGATCATCCAGCTTGCTCCTAATGGAAGTAAAGTGCTACAGCACCAGATCTCATACAGTCAGTATTCAGCACTGGGGAATGAGCAGCTAGTCAATTTGGCAGTGGTCGTAATGGATGTGGCCACTCAGGAGAGAGTCCTGGCTTCTGAAGAGTTTAACATCACCAGCCCAATCATCCACATAAAGGTTGCTGATGAGGATTCTATCATTGCCCGCCGACACCAGGTTGCTATGGTGACATTCACCAATCCGTTCCCTGTGGCAGTGAGAGGCACGTTGACTGTAGCAGGTTCAGGCCTGCTGGAGGACAAAGTGCTCATCAATGTTGCACTTCTGCAGCCCAGAGAGACCATGAACACTGTGGTACGCTTTACACCAAAGATGGCAGGAGTGAAGATGCTGCACGCAAGACTGAGCCTGGATATCAACCGCATTGTTATCCGTGGCTTCAGAACCATTACAGTCCGACCAGCATGAAAAGGGAAATCAGAACCAAGTACCAGAGCCACTGATTctattacagcttcaactct
>XM_026923681.2
aCAGACTCATGGAGGgtttgaAACTTATGTATGCTAGCCTGGAGGAAGCTCAGAACCATGTGTGGCACAAGACAGAAGGGCTAAACTCCACTTCTCTGGTAGTGAGAAGGGGACAGCCCTTTAGACTCACACTGAGCTTCAATAGACCTTATATGTCAAGCAAAGATGACCTCATGCTCAGGATAGAACTAGATCGCCTTTACTGTGACATTCCCATCACATCCTCAAAAGCCACATCTCAATCCCAGTGGTCTGCCTACTTTCTGCAGGGCATGCTGGACCCCAGTGCCCCTCACAaggcttctgtgtgtgtgtacagtccgCCCACTGCTATCGTGGGAGTGTATCATCTCCATCTGTTGTTCATGTCTCGCTATGGCTCTTCCAGCCGCAGGATTGGACAATTGACCCTGCTGTGTAATCCATGGTGCACAGCTGACTCTGTCTACTTGCCTGAAGAAAATCAGAGGGAAGAGTATGTGAGGAATGACTTTGGCCTGCTGTACCAGGGCACAGCCAAAAACATCAGCTTTAGGCCATGGGGCTTTGATCAGTATGAGAGTGGTATCTTGGAGATCTGTATGATGATGCTGCAGGTGAGCAATGAACACAAGAAAAACTGGAAGAGTGATTATGCTAATCGCTCTGACCCTGTTTACATCAGCAGAGTTGTCTCAGCTATGATAAATAGTAATGATGACTGCGGTGTGCTGCAAGGGAATTGGTCGGAGGATTACAGAAGTGGTGTCAACCCGTCAGAGTGGACAGGCAGTGGAAGCATTCTGAAACAGTGGGCCAAATCTGGCTTCAGCCCTGTGAAATATGGACAGTGCTGGGTTTTTGCTGCTGTCATGTGCACAGTAATGAGAGTCCTGGGAATCCCGACTCGTGTGGTCACCAACTATAACTCGGCTCATGACACTAATGGGAACCTGGTGATTGAGGAGTATTACACTGAGAAAGGGGAAAAGCTGCCTCATAATCGTGACAGCATCTGGAACTTTCACGTGTGGGTGGAGTGCTGGATGAAGAGAGGAGATCTAAGAGCAGGATTTGATGGCTGGCAGGTGGTTGACCCCACTCCACAGGAGAGAAGCAGAGGAGTATACAGGTGTGGTCCTGCCCCAGTAAAAGCCATTCGGGAGCGTCAGATCGACATGGCCTATGATGTCCCATTCATCTATGCTGAAGTtaatgctgatgtgtgtgtgtacattgtgCGCCAAGCACAAGTATTGAACTACgccactgagacagacagagttgGTGTTCTCATATGCACCAAGAGCCTGGGATCCAACCAACCACAGGATATCACTTCTAcctacaaacacaaaaaagCTCTACAGCCATCTGTCAGATCAACAAGTCCAATGCCAGGACCACGTCTAGCCAACAACCATGGATCAGCAAAAGGTCTTTCTGTACGTCTGAGCCTCATTAAAGCACCTGTTGTTGGAGAAAATATCTCCTTCTCAGTCACTGTGACTAATCATGGCAGTGTTGTGAAGACAGTGAGAGAATACGTCAATGCTCAGGCAAAGAGCTATGACCACAGTCCATCTGATACCTTCTGGGAGGCCGATAAGATCATCCAGCTTGCTCCTAATGGAAGTAAAGTGCTACAGCACCAGATCTCATACAGTCAGTATTCAGCACTGGGGAATGAGCAGCTAGTCAATTTGGCAGTGGTCGTAATGGATGTGGCCACTCAGGAGAGAGTCCTGGCTTCTGAAGAGTTTAACATCACCAGCCCAATCATCCACATAAAGGTTGCTGATGAGGATTCTATCATTGCCCGCCGACACCAGGTTGCTATGGTGACATTCACCAATCCGTTCCCTGTGGCAGTGAGAGGCACGTTGACTGTAGCAGGTTCAGGCCTGCTGGAGGACAAAGTGCTCATCAATGTTGCACTTCTGCAGCCCAGAGAGACCATGAACACTGTGGTACGCTTTACACCAAAGATGGCAGGAGTGAAGATGCTGCACGCAAGACTGAGCCTGGATATCAACCGCATTGTTATCCGTGGCTTCAGAACCATTACAGTCCGACCAGCATGAAAAGGGAAATCAGAACCAAGTACCAGAGCCACTGATTggttcaatatgatgtcgg

Function

NR:

description
protein-glutamine gamma-glutamyltransferase 5-like isoform X2

GO: NA

KEGG:

id description
K05622 TGM5; transglutaminase 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923663.2 True 2273 mRNA 0.47 15 14863233 14869703
XM_026923672.2 False 2119 mRNA 0.49 16 14862967 14869703
XM_026923681.2 False 2118 mRNA 0.49 16 14863000 14869703

Neighbor

gene id symbol gene type direction distance location
vstm2l LOC108271577 coding downstream 48520 14797637 ~ 14814447 (-)
dlgap4b LOC108272050,LOC108427631 coding downstream 160932 14600663 ~ 14702035 (-)
LOC113529797 LOC108271527,LOC107705866 coding downstream 264421 14591405 ~ 14598546 (-)
zgc:123305 LOC108271928,LOC107385524 coding downstream 281667 14562176 ~ 14581300 (-)
trim107 LOC108271930 coding downstream 302291 14557562 ~ 14560676 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding upstream 17762 14887465 ~ 15009183 (-)
LOC113535748 rassf1 coding upstream 141124 15010827 ~ 15024533 (-)
zmynd10 zmynd10 coding upstream 155424 15025127 ~ 15032562 (-)
nprl2 nprl2 coding upstream 163743 15033446 ~ 15039603 (-)
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding upstream 407202 15276905 ~ 15278713 (-)
G27484 NA non-coding downstream 2721 14860005 ~ 14860246 (-)
G27448 NA non-coding downstream 72326 14790431 ~ 14790641 (-)
G27303 NA non-coding downstream 370128 14492637 ~ 14492839 (-)
G27259 NA non-coding downstream 408676 14444626 ~ 14454291 (-)
G27254 NA non-coding downstream 461538 14354841 ~ 14401429 (-)
G27502 NA non-coding upstream 14552 14884255 ~ 14884487 (-)
G27600 NA non-coding upstream 140622 15010325 ~ 15010661 (-)
G27652 NA non-coding upstream 195182 15064885 ~ 15065211 (-)
G27699 NA non-coding upstream 260300 15130003 ~ 15130260 (-)
G27705 NA non-coding upstream 275002 15144705 ~ 15146155 (-)
G27107 LOC108272123 other downstream 804522 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 955778 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1215790 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 1228223 13632262 ~ 13634744 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 1360797 13493512 ~ 13502170 (-)
pxmp4 pxmp4,LOC103464829 other upstream 3245 14872948 ~ 14875990 (-)
G27843 NA other upstream 427606 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 586932 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 592247 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 1256127 16125830 ~ 16135715 (-)

Expression


Co-expression Network