LOC113532448 (LOC108272058,LOC108411580,LOC107696472,LOC107723922,LOC107708114,LOC106582647,LOC107587565,LOC107666149,LOC107595422)


Basic Information

Item Value
gene id LOC113532448
gene name LOC108272058,LOC108411580,LOC107696472,LOC107723922,LOC107708114,LOC106582647,LOC107587565,LOC107666149,LOC107595422
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6433919 ~ 6462290 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923858.2
GCCTATTTGACGGTAGGACAGTTTCTTGACATTGCtggaaagagggagggagggaggactGTAGTGTTATACAACGTGTGTTCAGTTAGCAGGGAAAGGAACCTTGTTAATTCCTGCTGTAAAGTTGCAGTAATATATTATTGTGACTTCGGGCTGAATCATGTATCGGCGCCCTTTGCAGCATGGCTTCAGACAATTATTAAGCTCGTCTCTTTGCAGCAGGACCATCTTCGGGAAGGCCACTGAGCAGGATCTTGCCAAAGCTTTGGTGTCTTGTCGTTGCACAGGAGCAGTATTGCAGACTCAGACACAATGTCGAGCTCTTCACAGCACACAACAGCTCTGTGCTGTAAAACATACACCTCAGGCTTCAGAGGAAGAAGTTGGAGCTTTCACCAAACTTATTGAGGCCATGGGCTTCACCGGGCCACTCAAGTACAACAAATGGAAAATCAAAATAGCTGCTTTGCGTATGTATACTTGCTGCGTTGAGAGAATCAACTACGATGAGTTTTTTGAAAaGTGCTCCCTCCCTGACACACTCAACTCCTGGTTTTTGGTGGCACAACTCCATGTTTGGATGTGTTTGGTGCGGATGAGGCAGGAAGGCAGAGAAGGGAAGTACATGTGTCGCTACATCGTCCATTCTATGTGGGAGGATGTAGAACAGAGAAGCAAGATCATGGGGaTTGATGCTATTCAGAGGAAGGAAAGTATGAGAGTtatgacagaaacattttatgCTGCTATTTTTGGATACGATGAGGGAATCCTGTCAGATGACTGTGTTCTTGCAGCAGCGCTTTGGAGGAATCTGTTCAACAGGCAGTGTGAGGACCCGAGACAGCTCGAGCTCATGGTTGAATATGTCCGCAAGCAGATGCAGTTTATTGATGCTCTGGATGGGGATGATCTTCTCCTAACAGGAGAGGTGAAATGGCGCCCTCTGGTGGAAGAGAATGCACAGAGCATCCTGAAGATTCCCAATCCAACATATAATGATGCAGGCCTTTAAAGAACAGTACTCTGTCAGACTAAAGTACCCACAACACCATGGTTTGGGTATTTGATTTGAAGACATGACCAGCCAGTCTGGAACTGCTGCCAGTATGCTtgatctctgtctgtctgtctgtctgtctgtcccagtTCTGTTTCCCTCTCTCATTAAACCAAGCATACTGTGATAGGACTGCATGGACCTTTTAACCTCACACATATAGGGAGTATGGAGGATTCAGCAGTTTTCTGTATTTACAAGTTTGAAGAACTGCCATTATGTTTATGCTTTTGGCCATGACTGTAGCTCTTTCGCAATTCTCACTGTTAGAGGAATGTGTATGTGCTTACTTGTTTCCTAGGATCATTAAGCCGAGTGGAATAGGgagctttttgttttaattattattataaaataaagatgtttCTTTGGTATTACACAGAA

Function

NR:

description
PREDICTED: ubiquinol-cytochrome-c reductase complex assembly factor 1

GO: NA

KEGG:

id description
K17662 CBP3, UQCC; cytochrome b pre-mRNA-processing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923858.2 True 1444 mRNA 0.44 9 6433919 6462290

Neighbor

gene id symbol gene type direction distance location
fam83c fam83c coding downstream 20309 6400416 ~ 6413610 (-)
mmp24 mmp24,LOC107723920,LOC107587563,LOC107696473,LOC107666082 coding downstream 71084 6324114 ~ 6362835 (-)
eif6 eif6,LOC107723919 coding downstream 120508 6305172 ~ 6313411 (-)
tomm34 tomm34,LOC100305086 coding downstream 238731 6181028 ~ 6195188 (-)
LOC117599288 NA coding downstream 273245 6151401 ~ 6160674 (-)
gdf5 gdf5 coding upstream 41231 6503521 ~ 6516423 (-)
sdc4 NA coding upstream 65319 6527609 ~ 6537373 (-)
oser1 oser1 coding upstream 87065 6549355 ~ 6555184 (-)
rbpjl rbpjl,LOC108271532 coding upstream 116322 6578612 ~ 6602109 (-)
LOC113531909 stk4,LOC108435692,LOC105901859,LOC103371188 coding upstream 282093 6744383 ~ 6770848 (-)
G22538 NA non-coding downstream 132872 6298122 ~ 6301047 (-)
G22539 NA non-coding downstream 149971 6283115 ~ 6283948 (-)
G22478 NA non-coding downstream 203950 6229760 ~ 6229969 (-)
G22470 NA non-coding downstream 284752 6148946 ~ 6149167 (-)
G22367 NA non-coding downstream 390167 6043116 ~ 6043752 (-)
G22650 NA non-coding upstream 159645 6621935 ~ 6622442 (-)
G22695 NA non-coding upstream 213190 6675480 ~ 6675687 (-)
G22699 NA non-coding upstream 221164 6683454 ~ 6683730 (-)
G22743 NA non-coding upstream 255985 6718275 ~ 6765692 (-)
G22896 NA non-coding upstream 337228 6799518 ~ 6800819 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 225253 6205284 ~ 6208666 (-)
LOC117596222 NA other downstream 357042 6074035 ~ 6076877 (-)
blcap blcap,bc10 other downstream 468736 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 897859 5532037 ~ 5536060 (-)
LOC113533127 NA other downstream 1019833 5405967 ~ 5414086 (-)
G22591 NA other upstream 17112 6479402 ~ 6480011 (-)
mitfa mitf,LOC108424034 other upstream 1798195 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 1881334 8343624 ~ 8351694 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other upstream 2017084 8479374 ~ 8484181 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 2973216 9435506 ~ 9441845 (-)

Expression


Co-expression Network