LOC113532874 (cyc1,LOC108433700,LOC108272604,LOC107666085,LOC103023575,LOC107729751,LOC107554183,LOC108414617)


Basic Information

Item Value
gene id LOC113532874
gene name cyc1,LOC108433700,LOC108272604,LOC107666085,LOC103023575,LOC107729751,LOC107554183,LOC108414617
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5508012 ~ 5520353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924555.2
GCCAtgtgagcagcagcagcagaagaagagCGCAGCGGAAGTCGATCCGAAACGGAAGAACATGGCGGCGCTCCGAATGGTCGTGTTGTCCGGGTGCGGTAGGACCTTCTTAAACGCACCAAAAGCGGTGCTCATGCCTCGGGTCAACATGTCCTTTGCCAGCTTGCCAAAGGGGAGAAAGGTGGCCCTGACCACACTGGGAGTGTTAACTACAGGAGGGGTAGGCCTGGCTCTGGTGCTCCATCAGTCAGTCAGGGCGTCAGAATTGGAGCTGCATCCTCCCAGTTACCCCTGGAGCCATAACGGCTTAATGTCTGCTCTCGACCACACCAGtATCCGTCGTGGGTATCAAGTCTACAAGCAGGTGTGTTCAGCGTGTCACAGTATGGAGTATCTGGCTTTCCGCAACCTGGTGGGAGTTTCTCACACAGAGGACGAGGCAAAAGCGTTAGCTGAAGAGATTGAAGTTTTGGATGGACCTGATGAGACGGGAGAAATGTTCACCCGGCCTGGTAAACTTTCTGACTACTTCCCCAAACCATACTCCAGTCCGGAAGCTGCTCGTGCTGCCAACAACGGAGCTCTGCCCCCTGACCTCAGCTATATCGTCAATGCCAGGCATGGAGGTGAAGActatattttctctctcctaACTGGTTACTGTGAGCCTCCGGCAGGTGTGTCTCTGAGAGAGGGGCTTTACTACAACCCCTACTTCCCTGGTCAGGCGATTGGGATGGCGCCACCTATTTATAATGAAGTGCTTGAATATGATGATGGAACACCAGCTACAATGAGTCAGGTGGCTAAAGATGTGTGTACTTTCCTGAGATGGGCTGCTGAGCCAGAGCATGACCAGCGCAAGCGTATGGGACTAAAGTTGCTAATCGGTTCAGCTATCCTCACCCCGCTTGTCTACTACTTGAAGAGACACAAATGGTCTGTGCTGAAGAGCAGAAAGATTGCCTATAGGCCTCCCAAATAAATGTGTCAGGTTTAGGCATCACATCAGGCTGAAGCTGTGCATGTACAGCTCGAAAGACAGAGGGAACAGCTTCTGTTATCACAGTTGATAAAACAAGATTCACAATTGTCAGACTTTTCAACATGCACAGGTTGTCCTAATCTGTTGCCTATTTGTCAAGTAGCGTTCCACATTTCCTGCTGACTTGAGAAATGGGCACCAACtacagctgcattttattttactgtataaatataaattatctAAACAAAA

Function

symbol description
cyc1 Predicted to enable electron transfer activity; heme binding activity; and metal ion binding activity. Predicted to be involved in mitochondrial electron transport, ubiquinol to cytochrome c. Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex III. Is expressed in several structures, including adaxial cell; digestive system; eye; midbrain; and musculature system. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 6. Orthologous to human CYC1 (cytochrome c1).

NR:

description
PREDICTED: cytochrome c1, heme protein, mitochondrial-like

GO:

id name namespace
GO:0005506 iron ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00413 CYC1, CYT1, petC; ubiquinol-cytochrome c reductase cytochrome c1 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924555.2 True 1237 mRNA 0.50 7 5508012 5520353

Neighbor

gene id symbol gene type direction distance location
ahcy ahcy,LOC107666127,LOC107596784,LOC107685809,LOC107729767,LOC107554187 coding downstream 44886 5437548 ~ 5463126 (-)
dtd1 dtd1 coding downstream 82892 5422202 ~ 5425120 (-)
atg3 atg3,LOC107659953,LOC107752093,LOC107581307,LOC107551927,LOC107713119 coding downstream 114491 5346109 ~ 5393521 (-)
bin1b bin1b,LOC108272731,LOC108436425 coding downstream 183024 5264912 ~ 5324988 (-)
nufip1 nufip1 coding downstream 288725 5210496 ~ 5219287 (-)
mtss1 mtss1,LOC108273055,LOC108433704,LOC107708130,LOC107685817,LOC107554179 coding upstream 73756 5594109 ~ 5631257 (-)
osgn1 LOC108272601 coding upstream 118243 5638596 ~ 5651285 (-)
pigu pigu,LOC107554168,LOC107596774,LOC107666169,LOC107708084 coding upstream 139450 5659803 ~ 5679959 (-)
chd6 chd6,LOC107666014 coding upstream 241384 5761737 ~ 5863433 (-)
psmf1 psmf1,LOC107580402 coding upstream 462231 5982584 ~ 5989372 (-)
G22156 NA non-coding downstream 33245 5474557 ~ 5474767 (-)
G21975 NA non-coding downstream 176874 5330826 ~ 5331138 (-)
G21963 NA non-coding downstream 182489 5325159 ~ 5325523 (-)
G21960 NA non-coding downstream 239969 5267485 ~ 5268043 (-)
G21944 NA non-coding downstream 279646 5228086 ~ 5228366 (-)
G22186 NA non-coding upstream 131522 5651875 ~ 5652106 (-)
G22188 NA non-coding upstream 137091 5657444 ~ 5657651 (-)
G22182 NA non-coding upstream 159768 5680121 ~ 5680482 (-)
G22203 LOC108272599,LOC108433672 non-coding upstream 170334 5690687 ~ 5691117 (-)
G22201 NA non-coding upstream 181264 5701617 ~ 5702754 (-)
LOC113533127 NA other downstream 93926 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 306800 5111462 ~ 5201212 (-)
obsl1a obsl1 other downstream 606001 4813275 ~ 4902011 (-)
trnaf-gaa_14 NA other downstream 1175841 4332099 ~ 4332171 (-)
G21434 NA other downstream 1250925 4256668 ~ 4257087 (-)
romo1 romo1,LOC102788570 other upstream 11684 5532037 ~ 5536060 (-)
blcap blcap,bc10 other upstream 436286 5956639 ~ 5965183 (-)
LOC117596222 NA other upstream 553682 6074035 ~ 6076877 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 684931 6205284 ~ 6208666 (-)
G22591 NA other upstream 959049 6479402 ~ 6480011 (-)

Expression


Co-expression Network