eya2 (eya2,LOC107666141,LOC106565282)


Basic Information

Item Value
gene id eya2
gene name eya2,LOC107666141,LOC106565282
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10241254 ~ 10259219 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925110.2
gaaggaggaggagggatcACAGGTCGCtagtttatttagcatatttcttCTCAGCGCTTCTGTCAGTGGCGCACACACTGCTGTTGTTTCAGCGCGGAGGAGGGCCAaagctcactcactcactcgctctctAATCACTCCGACAACACACTCCAAGCCTCATCTGTTGTTGACACAACGGTCAGTCGGCGATAACGCCGTTTACTCTGAGCTTTTGTGGCGTAGATAATGTTTGGACCTGAGCGTTAGTTTACCATCCGGCTCATACACACTGACTGTCAGCGCTCCTGTCACGCGCGCGGACCATTTACTTCACTAATTACTGGTTCCAGCTGGAATGGAGGCGCTGCTCTGAAGCCTGACTTCTTCACCTGAGTTGCTACAGTTAGGATGGCAAGGAgctgagagaagaagagaaaaagagaaaaacgaCTACCCGCCCTTACTGACAGGGGCTTGTTATATCAGCTTTCACTTATTACGGCATTGCAGCTGTCCCAAGGATAAGTGATGGCTGCTTATGGGCAGACACAGTACAGCCCTGCCATCCAGCCTGCAGGCCCatacacaccctacacacatcACACCCAGGGCTACAGTGTGCCATCCTACAATATTAAAACAGAAGATGGCTTGAGTCATTCGCCAGGACAGAGCAGTCTGCTTGGCTACACATCCAACTTCAGCGGAACACCTCCTAGCCAAGCTCTTTACAGTTACTCCACACACGGTGGCAGTATTTCTTCTGGAATTTTCCAAGGAACGAATGCCATCACAGGCTCAACGCCATTTAGTCCCACACAGCAGgaTTTCACAGCGTATTCCAGTTATGGCCAAAGCCAGTACTCACCATACTATAATACACACTACAACAACCCCTACCTCACAAGCAGTAATATTAGCCCTTCAGCCATCGGCACGGCAATCCCCTATCAGCATACAGAACATCCTGCTATAACAACCAGCCCAGAGTCTCACCCAGGTGAAGACAAGCATCAAGGAGAGTATCATGCCCCCCCTAGCCCTCCAACCCCAGGAAAGGAGCAGGAAGGAGGTCCAGCCAGACGCGGCTCGGATGGAAAGCTGCGGGGAAGGAAGAGGGCCAATGACCCTGTACCCCCACTGGACTCAGAAATCGAGAGAGTGTTTATTTGGGACCTGGATGAAACCATCATCATTTTCCACTCACTTCTCACCGGCTCTTTTTCCACACGCTTCGGCAAGGACTCAGCCAAAGCTGTGTCTCTGGGGCTGTGGATGGAAGAGATGATCTTCAACTTGGCAGACTCACGACTCTTCTTCAATGACCTAGAGGAATGTGACCAAGTTCATATCGATGATGTGGCCTCGGATGACAACGGACAGGACTTGAGcacaTATAACTTTGGAACAGACGGCTTCCAGAGTCCAGCAGGAGGTGGTGCTCTGTGTTTAGGCTCAGGGGTCCACGGTGGCGTCGACTGGATGAGGAAGCTGGCCTTCCGCTACCGGCGAGTAAAAGAGATCTACAACACTTTCAAGAACAATGTAGGAGGTTTGCTGGGGAATCCAAAGCGAGAGGAATGGCTTCAGCTGAGACGAGAAATGGAGGTTCTTACTGATCTGTGGCTTACGCAGGCTCTAAAGGCTCTAGCTCTTATTAACTCCAGACCAAACTGTGTGAATGTGATGGTCACCACCACTCAGCTGATCCCAGCTCTTTCCAAAGTGCTGCTGTATGGTCTGGGAGGAGCTTTTCCCATCGAGAACATTTACAGTGCCACCAAAACTGGTAAAGAGAGCTGTTTTGAGAGGGTGACTCAGAGGTTCGGGAGGCGAGCTGTGTACGTGGTAATCGGAGATGGAGTGGAAGAGGAAACTGTGGCAAAGAAGAAAAACATGCCATTCTGGAGGGTAACATGCAGAGCAGACCTGGAGGCACTGAGTCATGCACTAGAGCTGGACTACCTCTAGAGGGCAGAATCTCTAACACCATCTCTCATTTGAATTGGTCAACCATAATCACATGGCCAAGCCAAGAACTGCAGGAAATGTGTTTGTTCCAAATCAGTTTCGAAacacttttcttttccctcttttcttccGTCTCTGACAACAGTTTTATACAATGGCGCATTGCACTGGTGACAATAATCCATTTAAGACCAAAGTGCTTTAAAGGACCAACAAGTTTGTGCTTATGGATATGAGACAACATGACTTCAGGACAAATTTGTGTGTATCATTTGTGATGTGAAAGATCAGATTTTGGATAAAAAGTGTGCAAATA
>XM_026925117.2
aaggaggaggagggatcACAGGTCGCtagtttatttagcatatttcttCTCAGCGCTTCTGTCAGTGGCGCACACACTGCTGTTGTTTCAGCGCGGAGGAGGGCCAaagctcactcactcactcgctctctAATCACTCCGACAACACACTCCAAGCCTCATCTGTTGTTGACACAACGGTCAGTCGGCGATAACGCCGTTTACTCTGAGCTTTTGTGGCGTAGATAATGTTTGGACCTGAGCGTTAGTTTACCATCCGGCTCATACACACTGACTGTCAGCGCTCCTGTCACGCGCGCGGACCATTTACTTCACTAATTACTGGTTCCAGCTGGAATGGAGGCGCTGCTCTGAAGCCTGACTTCTTCACCTGAGTTGCTACAGTTAGGATGGCAAGGAgctgagagaagaagagaaaaagagaaaaacgaCTACCCGCCCTTACTGACAGGGGCTTGTTATATCAGCTTTCACTTATTACGGCATTGCAGCTGTCCCAAGGATAAGTGATGGCTGCTTATGGGCAGACACAGTACAGCCCTGCCATCCAGCCTGCAGGCCCatacacaccctacacacatcACACCCAGGGCTACAGTGTGCCATCCTACAATATTAAAACAGAAGATGGCTTGAGTCATTCGCCAGGACAGAGCAGTCTGCTTGGCTACACATCCAACTTCAGCGGAACACCTCCTAGCCAAGCTCTTTACAGTTACTCCACACACGGTGGCAGTATTTCTTCTGGAATTTTCCAAGGAACGAATGCCATCACAGGCTCAACGCCATTTAGTCCCACACAGCAGgaTTTCACAGCGTATTCCAGTTATGGCCAAAGCCAGTACTCACCATACTATAATACACACTACAACAACCCCTACCTCACAAGCAGTAATATTAGCCCTTCAGCCATCGGCACGGCAATCCCCTATCAGCATACAGAACATCCTGCTATAACAACCAGCCCAGAGTCTCACCCAGGAGAGTATCATGCCCCCCCTAGCCCTCCAACCCCAGGAAAGGAGCAGGAAGGAGGTCCAGCCAGACGCGGCTCGGATGGAAAGCTGCGGGGAAGGAAGAGGGCCAATGACCCTGTACCCCCACTGGACTCAGAAATCGAGAGAGTGTTTATTTGGGACCTGGATGAAACCATCATCATTTTCCACTCACTTCTCACCGGCTCTTTTTCCACACGCTTCGGCAAGGACTCAGCCAAAGCTGTGTCTCTGGGGCTGTGGATGGAAGAGATGATCTTCAACTTGGCAGACTCACGACTCTTCTTCAATGACCTAGAGGAATGTGACCAAGTTCATATCGATGATGTGGCCTCGGATGACAACGGACAGGACTTGAGcacaTATAACTTTGGAACAGACGGCTTCCAGAGTCCAGCAGGAGGTGGTGCTCTGTGTTTAGGCTCAGGGGTCCACGGTGGCGTCGACTGGATGAGGAAGCTGGCCTTCCGCTACCGGCGAGTAAAAGAGATCTACAACACTTTCAAGAACAATGTAGGAGGTTTGCTGGGGAATCCAAAGCGAGAGGAATGGCTTCAGCTGAGACGAGAAATGGAGGTTCTTACTGATCTGTGGCTTACGCAGGCTCTAAAGGCTCTAGCTCTTATTAACTCCAGACCAAACTGTGTGAATGTGATGGTCACCACCACTCAGCTGATCCCAGCTCTTTCCAAAGTGCTGCTGTATGGTCTGGGAGGAGCTTTTCCCATCGAGAACATTTACAGTGCCACCAAAACTGGTAAAGAGAGCTGTTTTGAGAGGGTGACTCAGAGGTTCGGGAGGCGAGCTGTGTACGTGGTAATCGGAGATGGAGTGGAAGAGGAAACTGTGGCAAAGAAGAAAAACATGCCATTCTGGAGGGTAACATGCAGAGCAGACCTGGAGGCACTGAGTCATGCACTAGAGCTGGACTACCTCTAGAGGGCAGAATCTCTAACACCATCTCTCATTTGAATTGGTCAACCATAATCACATGGCCAAGCCAAGAACTGCAGGAAATGTGTTTGTTCCAAATCAGTTTCGAAacacttttcttttccctcttttcttccGTCTCTGACAACAGTTTTATACAATGGCGCATTGCACTGGTGACAATAATCCATTTAAGACCAAAGTGCTTTAAAGGACCAACAAGTTTGTGCTTATGGATATGAGACAACATGACTTCAGGACAAATTTGTGTGTATCATTTGTGATGTGAAAGATCAGATTTTGGATAAAAAGTGTGCAAATA

Function

symbol description
eya2 Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within inner ear development. Predicted to be active in nucleus. Is expressed in several structures, including head mesenchyme; neural plate; otic vesicle; presumptive telencephalon; and sensory system. Orthologous to human EYA2 (EYA transcriptional coactivator and phosphatase 2).

NR:

description
eyes absent homolog 2-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process

KEGG:

id description
K17620 EYA2; eyes absent homolog 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925110.2 True 2269 mRNA 0.49 16 10241254 10259219
XM_026925117.2 False 2250 mRNA 0.49 16 10241254 10259218

Neighbor

gene id symbol gene type direction distance location
LOC113532087 LOC108271496 coding downstream 21873 10213908 ~ 10219381 (-)
slc12a5a slc12a5,si:ch211-59d13.2,LOC107744354 coding downstream 42863 10044762 ~ 10198391 (-)
ctsa ctsa,LOC107587598,LOC107696438,LOC107744356,LOC107666023,LOC107560512 coding downstream 207804 10025424 ~ 10033450 (-)
pcif1 pcif1,LOC107666074,LOC107696439 coding downstream 235161 9994349 ~ 10006093 (-)
LOC113534196 dnttip1 coding downstream 248368 9983065 ~ 9992886 (-)
gcnt7 LOC108272018,LOC108272017 coding upstream 76174 10335393 ~ 10339327 (-)
LOC113532783 cdh22,LOC107553911,LOC107666158,LOC107587604,LOC107681302 coding upstream 293692 10552911 ~ 10743445 (-)
znfx1 znfx1 coding upstream 615705 10874924 ~ 10885023 (-)
ddx27 ddx27,LOC107553908,LOC107587605,LOC107681294 coding upstream 629193 10888412 ~ 10903945 (-)
snrpb snrpb,LOC108272150 coding upstream 646976 10906195 ~ 10910484 (-)
G24623 NA non-coding downstream 70079 10170970 ~ 10171175 (-)
G24620 NA non-coding downstream 72785 10168211 ~ 10168469 (-)
G24617 NA non-coding downstream 80013 10161032 ~ 10161241 (-)
G24611 NA non-coding downstream 89089 10151817 ~ 10152165 (-)
G24572 NA non-coding downstream 302211 9938256 ~ 9939043 (-)
LOC113534445 NA non-coding upstream 707477 10966696 ~ 10984007 (-)
G25184 NA non-coding upstream 762304 11021523 ~ 11021725 (-)
G25185 NA non-coding upstream 763220 11022439 ~ 11022641 (-)
LOC117599085 NA non-coding upstream 998545 11257764 ~ 11262304 (-)
G25320 NA non-coding upstream 1067607 11326826 ~ 11329556 (-)
G24516 NA other downstream 372976 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 515203 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 799409 9435506 ~ 9441845 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 1757073 8479374 ~ 8484181 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other downstream 1889560 8343624 ~ 8351694 (-)
G24760 NA other upstream 230074 10489293 ~ 10490295 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 656823 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 1183252 11442471 ~ 11485469 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 1427526 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 3234293 13493512 ~ 13502170 (-)

Expression


Co-expression Network