nufip1 (nufip1)


Basic Information

Item Value
gene id nufip1
gene name nufip1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5210496 ~ 5219287 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925773.2
CCTCCTTCGGGTCGGTGACCTCTGACGTCATCAGTCACGTGCTAGTGTTAACTCGATACATACTTCAACACGCTGTACTGATGCACTTCGTTTTTCCGTAGTGAGAACTATCTCTGATACCACGTTTTCATACGGCACAGCGTGTTAATTCCAGACAGTAATTATCGCGTGTTTGACGGTGGACATGGCTGAACCCGAGGGATGTCCACCCAGCAACTCAGGCTGGCCGACTCAGGAAGCACCGCTGAGACCGCCGAATGTACAGCAGACTCCTCAGCAACAACCGCACAAATTTCAGGCATTAAGAGACTGGAACTGGTTTCAGTCTGCGCCGACAAGTCCGTGGGGTCTCAACCCCATGTGTCCTATTAATAGCTACGGTGGTCCAGCTTATGTACAACACCACTATCCTGGTTATCATCTTCATGAATATCAGTATGGGAGGCAAGACCATAGCCAAAAACAGTGGAGAAACAAAcagaaaaaacagaaagaaccAGAATTCAGTCATTTCTGTGATACTTGTGATAGAGGTTTCAAAAACCATGACAAATACAATGAACATATTACCCAACATGTAAAGTGTTCTTTTGACGATTGCAAATACACTGCACATGAGAAGCTTGTCAAAATCCACTGGAAAAATAGTCATGCCCCAGGAGCAAAGCGAATCAAGTTGGACACTCCAGAGGAAATTGCAAAatggagagaggaaaggagaagGAACTACCCAACACAAAGCAATGTAgagaagaaaattaaattaatggaggtcagagaaaagagaggagatgTGCTGGAAACTTCTCAGTTTGGCCGTTTTAAGAGTCATGGCCGAGTGCATGGTGGGCACTATCATGCAGAAGGTTTCCAGACTCACAGAGGGCATGCATATGGTGGCCATCAATACTTCCATCCAGGTAGTGAAAAGGTGGAGCAGGTATCACCTCTCACATGCCTTCCCCATGATGTAGATCCTCTAGGAGCCCTGGCCACCAGTGATCCAGATTCTGAGAAAGAGGAGTCAGCAAAGGAGATGAAGGCTGACATTTCCGTGGCCCCCAAAAATATGACCTCCGCTCTAGGATCACTGATGTGCAGCTATGGAGAAGATATGACCGAAAGCGAAAGTGACAAAGAACCAGAAGATGCCCCAATCCTGAAAAGTGCTCTGGCTTTAGAGGAGAACAAGGTTTTGGTTGCAGCTCATTCTAACCCAAACCAGAACAGTGCACCAATGCCTGAGAGGAGGCCAACAACTGAGGAATTAGAGATCAGCCATCAAGTACCACATCCTCATTCAGAGTCACATCCTCTGAGGAGAGGAGGGAGTCGTGGAGGTAGACGAAGGGGAAGGCGACATAATGAACCTAGGAGTGGACCACAGAAATGTCGTCCTACTTTACTAGAGATGttGTTGGCTGCAGATATTCGCCATGAAAGGAATGTGGTGCTTCAGTGCGTTCGCTATATAATCCATAAGGAATTCTTTGGTCTAGCTTGTAAAGACTCCAACCTGGTGATGTCTGATGTTGCTTCAGTAACTATGAATGGTTCTGTGTCAGGAAATGATGTTGGTGAAAGTGACATAACAACATAATTATCTACGAAATGGAGCATTCAGTTGTGATGAAGGGTTGCCTGGTCATCCAGTCTCAGGAAGAGAATACTTCCTTTGTGTCACAGGATATACTGTTCATTAAAAGACATAAAGGAAATGGATTTATTCTGCTGGTCTCTGTCAAGACATAGCTGACCCCCAAGGTGTGTTTAAACAAAAGCTCACTGCACtagtaagcttttttttttcagtgtggagCACAAACATTCAGCCAAGGTCACTTCTGCTGATATTTGCTTAGTTTAGTAGCTGGTGATTGTTCCATGGGGGTACCACAGGATGGAGATGTGCCGAGGCAACCCTTAAAGCTAGTAAATCATTATCACTCAGAATATACCTCAGCTactttttaccagaggccatCAGGCTTTATCTGATTTTGTCACTTGATAACAGATCGAATTATTGTTAGGAGTCACTATGAGTCCCATGAATCTTTTTAAGTGAATGATCACACCAAGAATGTTGACTACAGCAGAATGGAGAACTTAGCTTACAAACGAGGAGTATGACAATGTTAGCTCGGAGATTTCTGTGGTTACCAGTGCCATACTGTTTAATTTTAAGTGACAAATcaaacatctcagaatgaagACCAAGACAGTTTGAGTATATTAGTGTTTTGTTTAACCTACATTTAACAGTGATTAATGATTTCTGTGTTtgattaaaacatgtttatccatgtgaatatgaattattataattttctaACAGTTTATTTAGTGGACATAAACAAATACTACAGGGTTAGAACAGCATGTTGAAGGATTTGACTGAATTTTGTATCACTACTTGTACACACATATTGCACACAGTTGACTACTTTAATAAGTCTAATTTTACATCTGGTTAACATGTCTATCAAGTTGTGTAACTGTAATGCATTTATTCAGGTAAATATTATTACTTCCTTGTTGCAGTAAAATTTTTCTCAACAATGAA
>XM_026925778.2
CCTCCTTCGGGTCGGTGACCTCTGACGTCATCAGTCACGTGCTAGTGTTAACTCGATACATACTTCAACACGCTGTACTGATGCACTTCGTTTTTCCGTAGTGAGAACTATCTCTGATACCACGTTTTCATACGGCACAGCGTGTTAATTCCAGACAGTAATTATCGCGTGTTTGACGGTGGACATGGCTGAACCCGAGGGATGTCCACCCAGCAACTCAGGCTGGCCGACTCAGGAAGCACCGCTGAGACCGCCGAATGTACAGCAGACTCCTCAGCAACAACCGCACAAATTTCAGGCATTAAGAGACTGGAACTGGTTTCAGTCTGCGCCGACAAGTCCGTGGGGTCTCAACCCCATGTGTCCTATTAATAGCTACGGTGGTCCAGCTTATGTACAACACCACTATCCTGGTTATCATCTTCATGAATATCAGTATGGGAGGCAAGACCATAGCCAAAAACAGTGGAGAAACAAAaaaaaacagaaagaaccAGAATTCAGTCATTTCTGTGATACTTGTGATAGAGGTTTCAAAAACCATGACAAATACAATGAACATATTACCCAACATGTAAAGTGTTCTTTTGACGATTGCAAATACACTGCACATGAGAAGCTTGTCAAAATCCACTGGAAAAATAGTCATGCCCCAGGAGCAAAGCGAATCAAGTTGGACACTCCAGAGGAAATTGCAAAatggagagaggaaaggagaagGAACTACCCAACACAAAGCAATGTAgagaagaaaattaaattaatggaggtcagagaaaagagaggagatgTGCTGGAAACTTCTCAGTTTGGCCGTTTTAAGAGTCATGGCCGAGTGCATGGTGGGCACTATCATGCAGAAGGTTTCCAGACTCACAGAGGGCATGCATATGGTGGCCATCAATACTTCCATCCAGGTAGTGAAAAGGTGGAGCAGGTATCACCTCTCACATGCCTTCCCCATGATGTAGATCCTCTAGGAGCCCTGGCCACCAGTGATCCAGATTCTGAGAAAGAGGAGTCAGCAAAGGAGATGAAGGCTGACATTTCCGTGGCCCCCAAAAATATGACCTCCGCTCTAGGATCACTGATGTGCAGCTATGGAGAAGATATGACCGAAAGCGAAAGTGACAAAGAACCAGAAGATGCCCCAATCCTGAAAAGTGCTCTGGCTTTAGAGGAGAACAAGGTTTTGGTTGCAGCTCATTCTAACCCAAACCAGAACAGTGCACCAATGCCTGAGAGGAGGCCAACAACTGAGGAATTAGAGATCAGCCATCAAGTACCACATCCTCATTCAGAGTCACATCCTCTGAGGAGAGGAGGGAGTCGTGGAGGTAGACGAAGGGGAAGGCGACATAATGAACCTAGGAGTGGACCACAGAAATGTCGTCCTACTTTACTAGAGATGttGTTGGCTGCAGATATTCGCCATGAAAGGAATGTGGTGCTTCAGTGCGTTCGCTATATAATCCATAAGGAATTCTTTGGTCTAGCTTGTAAAGACTCCAACCTGGTGATGTCTGATGTTGCTTCAGTAACTATGAATGGTTCTGTGTCAGGAAATGATGTTGGTGAAAGTGACATAACAACATAATTATCTACGAAATGGAGCATTCAGTTGTGATGAAGGGTTGCCTGGTCATCCAGTCTCAGGAAGAGAATACTTCCTTTGTGTCACAGGATATACTGTTCATTAAAAGACATAAAGGAAATGGATTTATTCTGCTGGTCTCTGTCAAGACATAGCTGACCCCCAAGGTGTGTTTAAACAAAAGCTCACTGCACtagtaagcttttttttttcagtgtggagCACAAACATTCAGCCAAGGTCACTTCTGCTGATATTTGCTTAGTTTAGTAGCTGGTGATTGTTCCATGGGGGTACCACAGGATGGAGATGTGCCGAGGCAACCCTTAAAGCTAGTAAATCATTATCACTCAGAATATACCTCAGCTactttttaccagaggccatCAGGCTTTATCTGATTTTGTCACTTGATAACAGATCGAATTATTGTTAGGAGTCACTATGAGTCCCATGAATCTTTTTAAGTGAATGATCACACCAAGAATGTTGACTACAGCAGAATGGAGAACTTAGCTTACAAACGAGGAGTATGACAATGTTAGCTCGGAGATTTCTGTGGTTACCAGTGCCATACTGTTTAATTTTAAGTGACAAATcaaacatctcagaatgaagACCAAGACAGTTTGAGTATATTAGTGTTTTGTTTAACCTACATTTAACAGTGATTAATGATTTCTGTGTTtgattaaaacatgtttatccatgtgaatatgaattattataattttctaACAGTTTATTTAGTGGACATAAACAAATACTACAGGGTTAGAACAGCATGTTGAAGGATTTGACTGAATTTTGTATCACTACTTGTACACACATATTGCACACAGTTGACTACTTTAATAAGTCTAATTTTACATCTGGTTAACATGTCTATCAAGTTGTGTAACTGTAATGCATTTATTCAGGTAAATATTATTACTTCCTTGTTGCAGTAAAATTTTTCTCAACAATGAA

Function

symbol description
nufip1 Predicted to enable RNA binding activity. Predicted to be involved in box C/D snoRNP assembly. Predicted to be active in nucleus. Orthologous to human NUFIP1 (nuclear FMR1 interacting protein 1).

NR:

description
PREDICTED: nuclear fragile X mental retardation-interacting protein 1 isoform X2

GO: NA

KEGG:

id description
K23308 NUFIP1; nuclear fragile X mental retardation-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925773.2 True 2566 mRNA 0.42 10 5210496 5219287
XM_026925778.2 False 2563 mRNA 0.42 10 5210496 5219287

Neighbor

gene id symbol gene type direction distance location
inha inha,LOC107586362 coding downstream 490869 4717410 ~ 4719627 (-)
igfbp2a LOC108273244,LOC108438161 coding downstream 592029 4590384 ~ 4618467 (-)
LOC113545959 NA coding downstream 726582 4475852 ~ 4483914 (-)
LOC117596286 NA coding downstream 752049 4458336 ~ 4458447 (-)
LOC117596284 NA coding downstream 763017 4447367 ~ 4447479 (-)
bin1b bin1b,LOC108272731,LOC108436425 coding upstream 45625 5264912 ~ 5324988 (-)
atg3 atg3,LOC107659953,LOC107752093,LOC107581307,LOC107551927,LOC107713119 coding upstream 126822 5346109 ~ 5393521 (-)
dtd1 dtd1 coding upstream 202915 5422202 ~ 5425120 (-)
ahcy ahcy,LOC107666127,LOC107596784,LOC107685809,LOC107729767,LOC107554187 coding upstream 218261 5437548 ~ 5463126 (-)
LOC113532874 cyc1,LOC108433700,LOC108272604,LOC107666085,LOC103023575,LOC107729751,LOC107554183,LOC108414617 coding upstream 288725 5508012 ~ 5520353 (-)
LOC117596013 NA non-coding downstream 267769 4939698 ~ 4942727 (-)
G21815 NA non-coding downstream 312881 4896938 ~ 4897615 (-)
G21810 NA non-coding downstream 383573 4826550 ~ 4826923 (-)
G21751 NA non-coding downstream 424761 4784833 ~ 4785735 (-)
LOC113545964 NA non-coding downstream 433165 4775288 ~ 4777331 (-)
G21944 NA non-coding upstream 8799 5228086 ~ 5228366 (-)
G21960 NA non-coding upstream 48198 5267485 ~ 5268043 (-)
G21963 NA non-coding upstream 105872 5325159 ~ 5325523 (-)
G21975 NA non-coding upstream 111539 5330826 ~ 5331138 (-)
G22156 NA non-coding upstream 255270 5474557 ~ 5474767 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 9284 5111462 ~ 5201212 (-)
obsl1a obsl1 other downstream 308485 4813275 ~ 4902011 (-)
trnaf-gaa_14 NA other downstream 878325 4332099 ~ 4332171 (-)
G21434 NA other downstream 953409 4256668 ~ 4257087 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 1432508 3750018 ~ 3777988 (-)
LOC113533127 NA other upstream 186680 5405967 ~ 5414086 (-)
romo1 romo1,LOC102788570 other upstream 312750 5532037 ~ 5536060 (-)
blcap blcap,bc10 other upstream 737352 5956639 ~ 5965183 (-)
LOC117596222 NA other upstream 854748 6074035 ~ 6076877 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 985997 6205284 ~ 6208666 (-)

Expression


Co-expression Network