si:ch211-105j21.9


Basic Information

Item Value
gene id si:ch211-105j21.9
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13490194 ~ 13493259 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926098.2
AATAGAGCTCACCGAATGAGGAGAACAATAATCACTACATGATCACTTTGGTTTTATTATTTGGAGTCGCTTCCATCCAAAGGTTAGggCACAAAGGACATCTGGATAGCCATGGATCTGTGCAATAAATTGCTTTTGATGTGTTGTCTTTCAATTGCGCTTTCCTTGGCTCTACACATTTTTACCAGTCCATCAACCACCCACAAGGCAATGGAAACAACCGGGCACAAAACAACacgaaacaacaaaaaagccaCAGCACAACAGGAAAACAATATTTCTAACTCATATAATAATTCATCTGTTAATGCCAACATAAATACTTCAAATAACAGCTCAACAATTCCAAACAGGCATAACAGTACAAACAGCACAGTTTCTGACAGCACACAGCCCAACTCAACAGTACCAGGCCCAACAGCAGAGATTACAACACATCAGATAAATCTAACTGCCACCCAAACAAACTTTGCAACACAATCTGTTGCTGATTCCACAAGAGCAGCAGTCTCAACAACACTCAGACCTCCAGTATCCGCTGTGCATGGCAGTAATGAAAGCACATCCAAGTCCACTCCTGCATACTTCACCACAGGAACAGCTCTTGGGAACAAATCAAACAATGAAACTGCTGCAGGTGCTGGTCTGAATCATTCAGAAGCGTCCCTGACCATTTTGTTCAGTGTAGTGCTCGGTGTGATAGTTCTAATAATTCTGGGGCTGTCTGTCTACAAAATGACCAAGAGCAAATGCACTCAGTATTCTCACCATCCTCTTCATAATGAAGATACAGGTGGGCAGTTTACGGTAACAGATGACACCCTAGTGACTTCAGGAGGGCTCTGTGACGGCCCTCAGATCTACAACTCCACAATAACTGCGCTGAATGAAGACCAGACGTTTACCTACACACCGACTCAATTCAGACTGGAGTTCTTGCATGAGGACTCAGCAACAGACCATATACACGAGGCTACCACCTTTAAAACTTTCAACACCACTGACAAACAGCCTTAGTAAATCAGTCTTGCACGTTaaaacttgaattttttttttaatttcatggaAAGAATAATAGGTGAAACAACAGTATGGAACAGTAACAACAAATGATACATAAAAATTGAACACAACATTTAAATCTTTTACAAATGATCAAACAAATTAGGGATAATgtaccttgaa
>XM_026926108.2
AATAGAGCTCACCGAATGAGGAGAACAATAATCACTACATGATCACTTTGGTTTTATTATTTGGAGTCGCTTCCATCCAAAGGTTAGggCACAAAGGACATCTGGATAGCCATGGATCTGTGCAATAAATTGCTTTTGATGTGTTGTCTTTCAATTGCGCTTTCCTTGGCTCTACACATTTTTACCAGTCCATCAACCACCCACAAGGCAATGGAAACAACCGGGCACAAAACAACacgaaacaacaaaaaagccaCAGCACAACAGGAAAACAATATTTCTAACTCATATAATAATTCATCTGTTAATGCCAACATAAATACTTCAAATAACAGCTCAACAATTCCAAACAGGCATAACAGTACAAACAGCACAGTTTCTGACAGCACACAGCCCAACTCAACAGTACCAGGCCCAACAGCAGAGATTACAACACATCAGATAAATCTAACTGCCACCCAAACAAACTTTGCAACACAATCTGTTGCTGATTCCACAAGAGCAGCAGTCTCAACAACACTCAGACCTCCAGTATCCGCTGTGCATGGCAGTAATGAAAGCACATCCAAGTCCACTCCTGCATACTTCACCACAGGAACAGCTCTTGGGAACAAATCAAACAATGAAACTGCTGGTGCTGGTCTGAATCATTCAGAAGCGTCCCTGACCATTTTGTTCAGTGTAGTGCTCGGTGTGATAGTTCTAATAATTCTGGGGCTGTCTGTCTACAAAATGACCAAGAGCAAATGCACTCAGTATTCTCACCATCCTCTTCATAATGAAGATACAGGTGGGCAGTTTACGGTAACAGATGACACCCTAGTGACTTCAGGAGGGCTCTGTGACGGCCCTCAGATCTACAACTCCACAATAACTGCGCTGAATGAAGACCAGACGTTTACCTACACACCGACTCAATTCAGACTGGAGTTCTTGCATGAGGACTCAGCAACAGACCATATACACGAGGCTACCACCTTTAAAACTTTCAACACCACTGACAAACAGCCTTAGTAAATCAGTCTTGCACGTTaaaacttgaattttttttttaatttcatggaAAGAATAATAGGTGAAACAACAGTATGGAACAGTAACAACAAATGATACATAAAAATTGAACACAACATTTAAATCTTTTACAAATGATCAAACAAATTAGGGATAATgtaccttgaa

Function

NR:

description
location of vulva defective 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926098.2 True 1185 mRNA 0.41 4 13490194 13493259
XM_026926108.2 False 1182 mRNA 0.41 4 13490194 13493259

Neighbor

gene id symbol gene type direction distance location
ppm1j ppm1j,LOC108427592,LOC107666087,LOC107668166,LOC107729744,LOC107708158 coding downstream 238283 13234936 ~ 13251911 (-)
LOC113537313 NA coding downstream 251388 13238704 ~ 13238806 (-)
rhoca rhoc,LOC108427591,LOC103035456,LOC108271788,LOC105908082,LOC107729745,LOC107668165,LOC105902219 coding downstream 258454 13214941 ~ 13231740 (-)
capza1a capza1,LOC108271791,LOC103046653,LOC106566046,LOC105908306,LOC106582739 coding downstream 300645 13177828 ~ 13189549 (-)
st7l st7l,LOC103035765,LOC106582738,LOC106566045 coding downstream 316524 13161489 ~ 13173670 (-)
tspan2a NA coding upstream 22921 13516180 ~ 13530635 (-)
ngfb ngf,ngfb,LOC103031633 coding upstream 39722 13532981 ~ 13544134 (-)
rplp2 NA coding upstream 133709 13626968 ~ 13629546 (-)
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding upstream 214195 13707454 ~ 13727074 (-)
LOC113533843 NA coding upstream 245284 13738543 ~ 13742560 (-)
G26613 NA non-coding downstream 314035 13175077 ~ 13176159 (-)
G26610 NA non-coding downstream 320532 13169253 ~ 13169662 (-)
G26585 NA non-coding downstream 384108 13104457 ~ 13106086 (-)
G26570 NA non-coding downstream 419371 13070595 ~ 13070823 (-)
G26387 NA non-coding downstream 688961 12801007 ~ 12801233 (-)
G26788 LOC108271946 non-coding upstream 17117 13510376 ~ 13568936 (-)
G26970 NA non-coding upstream 154188 13647447 ~ 13694820 (-)
G26985 LOC108271615 non-coding upstream 190864 13684123 ~ 13685782 (-)
G27016 NA non-coding upstream 295534 13788793 ~ 13791366 (-)
G27043 NA non-coding upstream 342571 13835830 ~ 13836482 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 1726059 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 2004725 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 2556030 10916042 ~ 10934164 (-)
G24760 NA other downstream 2999899 10489293 ~ 10490295 (-)
G24516 NA other downstream 3621916 9863367 ~ 9868278 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 253 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 139003 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 147122 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 371685 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 557142 14050401 ~ 14058445 (-)

Expression


Co-expression Network