ptgis (ptgis)


Basic Information

Item Value
gene id ptgis
gene name ptgis
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12305449 ~ 12356720 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926185.2
ACGTGAGCCGGTTTAGGTTGAATGCTCTATAAATGCGCTCGCACGCTGTATACAAACATTCCAACTTTCCTGAGCAGAAGGACGCAGCGCGCGAGCTTTACGGAATGACGTGGACACTGGTGCTGGTGCTGCTCGGAGTTCTTTCCGCAGTCATTGTCCTCTACACCAGGCGCacgagGCAAAGAAACGAGCCCCCGTTGGATAAAGGCAGAGTTCCCTGGCTTGGTCATGCCCTTGAGTTTGGGAAAGATGCTGCCAAGTTCTTAACACAGATGAAAGATAAGCATGGAGACATTTTTACAGTGTGTGTGGCTGGTCATTATGTGACTGTCCTACTGGATTCCAATTGCTATGATGCTGTGCTCGCAGACACCCAATCCCTTGATCTGACTCGCTATAGCCAACTTTTAATGGACAGAATCTTCAATCTTCAGTTGCCCAATCACAACCCAGTatctgagagaaacagagtggaCCAatacTTTAAGGGCTGCAATCTGTCTCGACTCTGCAGCTCAATGCAGAACAACCTCCAATTACTCATGGCATCTGTAAATACAAAGAACCCAACAGAATGGAAAAAGGACAGACTTTTTGACTTCTGTTACAGCTTGCTCTTCAAGGCAGGTTATCAAACCCTGTTTATCACAGAGAATAATAACAGTGCTGAATTCACTGAGGTTTATGAGGAGTTTCGGCGGTTTGACAAGATTTTACCAAAACTGGCACGACGTTCTGCACACAGAGATGAGTTGAAAGTTGCAAGCTCAGCACGAAAGCGACTATGGGAACTGCTGTGTCCAAACTGGTTTTCCACGGAAGCAGTGGCCCAGTCATGGATGCAGACCTACTTACAGCACCTAGAAGAGCAGGGCCTTGACAGACAGACCCAGCGGCGAGCCATGCTTCTCCAGCTGTGGGTTACACAGggtaaTGCAGGCCCTGCTGCCTTTTGGTTGCTGGGCTTCTTGCTTACTCACCCAGAGGCTCTGAAAGCTGTAAAAGAGGAGATGCGCAGCCTACAGCACCTCCCCCTGGACAAAATAGAGGACACACCAGTGTTAAACAGTGTTCTGAAGGAGACGCTGCGCCTCAGAGCAGCTGCCCTCATCACCAGAGATGTGATGCAGGACAAAACGGTTAAATTAAGCAACGGCCAAGAATATGTTCTACGGCATGGAGATCGCCTCTGTATCTTCCCTTTCCTCAGTCCACAGATGGATCCTCAGATCCATCATGAGCCAGAGAAGTTCAAGTTTGACCGCTTCCTTAATTCTGATGGGACAGAGAAGAGCAAGTTCTGTAAGGAGGGGTTGCGGATGAATTATGGTACCATGCCATGGGGAGCAAGGAGCAATTTGTGTCCAGGGCGTAATTTTGCtgtttgtgctttaaaaaaGTTTGTGCTCATGATTCTGACACAGTTTGACCTGGAGCTGTGTGATTGTAATGCATGCATGCCACCAGTGGACCCCAACCGTTATGGGTTCGGGATGCTCCAACCAGATGGGGATTTGGAAATCCGCTATAGACTCAAAAAAAGAATTGCATAATGTAAAACTATAGTCAAAacagtttaaaattaaatagcTTCATTGTATTTAAGCATCtgcttttatttgcttttgctgttttttgtacagtatttatatcacctgttatttattgaaataaaagaGGTCATTAACTTTC
>XM_026926191.2
TGGAGTGACGGAGGATTCACGCGCCGCACTTCCGGCCGCCGGCTGCACAGCGTTTCTTGTCTTCATGCTGAAGTGTGCTGTCCAGTCCAGGTATTCACCCTGCAGAAGGACGCAGCGCGCGAGCTTTACGGAATGACGTGGACACTGGTGCTGGTGCTGCTCGGAGTTCTTTCCGCAGTCATTGTCCTCTACACCAGGCGCacgagGCAAAGAAACGAGCCCCCGTTGGATAAAGGCAGAGTTCCCTGGCTTGGTCATGCCCTTGAGTTTGGGAAAGATGCTGCCAAGTTCTTAACACAGATGAAAGATAAGCATGGAGACATTTTTACAGTGTGTGTGGCTGGTCATTATGTGACTGTCCTACTGGATTCCAATTGCTATGATGCTGTGCTCGCAGACACCCAATCCCTTGATCTGACTCGCTATAGCCAACTTTTAATGGACAGAATCTTCAATCTTCAGTTGCCCAATCACAACCCAGTatctgagagaaacagagtggaCCAatacTTTAAGGGCTGCAATCTGTCTCGACTCTGCAGCTCAATGCAGAACAACCTCCAATTACTCATGGCATCTGTAAATACAAAGAACCCAACAGAATGGAAAAAGGACAGACTTTTTGACTTCTGTTACAGCTTGCTCTTCAAGGCAGGTTATCAAACCCTGTTTATCACAGAGAATAATAACAGTGCTGAATTCACTGAGGTTTATGAGGAGTTTCGGCGGTTTGACAAGATTTTACCAAAACTGGCACGACGTTCTGCACACAGAGATGAGTTGAAAGTTGCAAGCTCAGCACGAAAGCGACTATGGGAACTGCTGTGTCCAAACTGGTTTTCCACGGAAGCAGTGGCCCAGTCATGGATGCAGACCTACTTACAGCACCTAGAAGAGCAGGGCCTTGACAGACAGACCCAGCGGCGAGCCATGCTTCTCCAGCTGTGGGTTACACAGggtaaTGCAGGCCCTGCTGCCTTTTGGTTGCTGGGCTTCTTGCTTACTCACCCAGAGGCTCTGAAAGCTGTAAAAGAGGAGATGCGCAGCCTACAGCACCTCCCCCTGGACAAAATAGAGGACACACCAGTGTTAAACAGTGTTCTGAAGGAGACGCTGCGCCTCAGAGCAGCTGCCCTCATCACCAGAGATGTGATGCAGGACAAAACGGTTAAATTAAGCAACGGCCAAGAATATGTTCTACGGCATGGAGATCGCCTCTGTATCTTCCCTTTCCTCAGTCCACAGATGGATCCTCAGATCCATCATGAGCCAGAGAAGTTCAAGTTTGACCGCTTCCTTAATTCTGATGGGACAGAGAAGAGCAAGTTCTGTAAGGAGGGGTTGCGGATGAATTATGGTACCATGCCATGGGGAGCAAGGAGCAATTTGTGTCCAGGGCGTAATTTTGCtgtttgtgctttaaaaaaGTTTGTGCTCATGATTCTGACACAGTTTGACCTGGAGCTGTGTGATTGTAATGCATGCATGCCACCAGTGGACCCCAACCGTTATGGGTTCGGGATGCTCCAACCAGATGGGGATTTGGAAATCCGCTATAGACTCAAAAAAAGAATTGCATAATGTAAAACTATAGTCAAAacagtttaaaattaaatagcTTCATTGTATTTAAGCATCtgcttttatttgcttttgctgttttttgtacagtatttatatcacctgttatttattgaaataaaagaGGTCATTAACTTTC

Function

symbol description
ptgis Enables heme binding activity and prostaglandin-I synthase activity. Involved in prostaglandin biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in essential hypertension and hypertension. Orthologous to human PTGIS (prostaglandin I2 synthase).

NR:

description
prostacyclin synthase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008116 prostaglandin-I synthase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926185.2 False 1692 mRNA 0.46 10 12305449 12314745
XM_026926191.2 True 1720 mRNA 0.47 11 12305449 12356720

Neighbor

gene id symbol gene type direction distance location
kcnb1 kcnb1,LOC108272148,LOC107667042,LOC107713536,LOC107680683,LOC107555957 coding downstream 2401 12276618 ~ 12303048 (-)
camk1a camk1a,LOC108271991,LOC108427562,LOC107708108,LOC107680695,LOC107713533,LOC107667041 coding downstream 61198 12223244 ~ 12244251 (-)
ca16b LOC108272134 coding downstream 179790 12043629 ~ 12125659 (-)
tardbp LOC108271795,LOC108427558,LOC107555974,LOC107713527 coding downstream 264151 12035632 ~ 12041298 (-)
LOC117596078 NA coding downstream 276789 12026728 ~ 12028660 (-)
tarbp2 tarbp2,LOC107713493,LOC107666976,LOC107708175,LOC107561017,LOC107680718 coding upstream 75490 12432210 ~ 12438065 (-)
zgc:66479 NA coding upstream 82943 12439663 ~ 12443661 (-)
LOC113530111 LOC108271575,LOC108427572 coding upstream 90717 12447437 ~ 12469680 (-)
LOC113530099 igfn1.3,LOC107713484,LOC107561018,LOC107708174,LOC107666972,LOC107678151,LOC107549306,LOC108271616 coding upstream 145548 12502268 ~ 12518855 (-)
igfn1.1 LOC108272198,LOC108427574 coding upstream 163015 12519735 ~ 12542976 (-)
G26085 NA non-coding downstream 29395 12275235 ~ 12276054 (-)
G26082 NA non-coding downstream 35194 12269874 ~ 12270255 (-)
G26077 NA non-coding downstream 35637 12264692 ~ 12269812 (-)
LOC117596184 NA non-coding downstream 90647 12212988 ~ 12214802 (-)
G25723 NA non-coding downstream 367646 11937615 ~ 11937803 (-)
G26117 NA non-coding upstream 118427 12475147 ~ 12485954 (-)
G26124 NA non-coding upstream 144978 12501698 ~ 12502087 (-)
LOC113530116 NA non-coding upstream 196033 12552753 ~ 12553617 (-)
G26134 NA non-coding upstream 200880 12557600 ~ 12558161 (-)
G26138 NA non-coding upstream 204312 12561032 ~ 12561243 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 541314 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 819980 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 1371285 10916042 ~ 10934164 (-)
G24760 NA other downstream 1815154 10489293 ~ 10490295 (-)
G24516 NA other downstream 2437171 9863367 ~ 9868278 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 1136792 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 1275542 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 1283661 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 1508224 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 1693681 14050401 ~ 14058445 (-)

Expression


Co-expression Network