LOC113533843


Basic Information

Item Value
gene id LOC113533843
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13738543 ~ 13742560 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926224.2
GACCCAGCAGAACCTATTCAGCTTCACCATGGGTTGCCTAGAAACagttaatataaaaacaaacaatcaacATAAACAAGAAATGTAACTGTAATCAATGATCAGGGAGATTAGtttttggtttttttcagGACAGGTTTGAAATAGAGCAGTTAGGAAGGAGGCAATAAGAGAGGAGGTGGAAAGCAGAAGGCAGAAGGCTCAGTCTGAAGAAGAAATGGCCCAAACAAAAGGAGAGATGCTGACACAGCTccttaagACCCACATTATGAAGAGCAAATTTAACCTGCACAAGTTGAACCAGCAGTGGCGTTCGAACCTGCGCCAGACTCGAGCATCAGAGCTGCGTGAAGATTTCGCAATACTCAGCCAAACTTTAAAAAGAGTTGTGGACTTCAAGGACAATGTTATTAAGTTATTGGTGTGTGATCTGAGCGAAGCGGAGCAGCAGTCAGAACTGGCTCACAGGGCTCATCTCCAGTGTGTGGATCATCTGCTGGAGGTACAGAAAAGCCGACTGGCAGCACTAGAGTCACACTGGAGCACCAGTCTTAAGGAACTCAGTACTGAGTACAACACAGAGAGgaaaCAACTTTTGAATCTGCATCAGAAGGAGAGTGACTACCTCAAGGCAGAAAACTTTGCCTTGGAGCAGCGCTATGCTGAATTAGACAGTGAGGCCAGACAGGACTATCAGCTTGCACATGATGACATCAAAAACCGGTATATTGGCACGAAGCATGTAATGGAAAGCACATTGGAGGAGTTGCGGCAGTGGTACCTACGAGAACTGCAGAAGTACACAAACGCCACTGATGATCGAAAGAAAACAGCTCTAAATTTGCAATGCGCCATCCAGAAAAGAAACTTGAAGAGGAGGCACATGCAGAAATTGCAGGGCACCATTAAAGCTCTGCGTTCTCATCTGAGCACCAATCAGAGGGAAAATGAGGCATCTGCGTGTGGCCTTCGGGCAGAATGTGAGGAAATTACACAGGAAGTCCAACAGCTCAGAGCTAAGCTCTGCTCTGCACAGGCAGCTGAAAGAACACAGCTAGCTAATCACACTATATACAGCGATAACACAATTAAGAAACTACAGGATATTATAGGAGAGGGAGAGACATTGTTACGTCTGGCTGATGTGTGTCGCAAGCTTGAAACTGAGCAGGAGAAGGTGCTTCCCTTTTACACATCATCTTTATCTGCTGAGGAACTGAGTCAGGAGAAAGCACATGCTATGGAGGCAATGTCTGAAGAGCTAGTACAGACAATGATGGACTATACAGATCTAGAAAAGTTCTGGCAGCGTTACAACAAGGTTCTACTGGAACGTTTGTGTTTAGAACGGGAGAAGAAGGTCCTCAGATGGGAGAACCAGCAGCTGAGGATTCTTCTCAAGCAGTACCTGGATGGAATCTCTGTTAACGACGAGATCCTACAGCAGAGGAACTCACTGCTCATGTTGTCCTGCCCATCACTCCAAGCCTCTCCTGCTTCAgaaagccaaacacacacaagcaggaCAGTCACAGAGGCGTCTCATGTGGTGCAGCATACACTGTAGAGACGAtatcaaaataaaagcaaatataaaaCCAATATTATTCCAAAGACCAAGTTTGAGTCACTTGAGATGTTCTGCTTTTAACTTTATACAGTAATCATGCACTCTGGTGTTCTACAGTACCGGGATGCAGCTATAACTGCTCTAACTAACTCTTCTGTGCATGTCTGTGGGGAAGCTTCTGACATTAACACTAAGACATCGACAGTTTGCCTCCTGATTCCCAACTAGCACAGAACATGTAAAGTAAAGCCATTTgccatt
>XM_026926234.2
AATTAGGACCCAGCAGAACCTATTCAGCTTCACCATGGGTTGCCTAGAAACagttaatataaaaacaaacaatcaacATAAACAAGAAATGTAACTGTAATCAATGATCAGGGAGATTAGGTTTGAAATAGAGCAGTTAGGAAGGAGGCAATAAGAGAGGAGGTGGAAAGCAGAAGGCAGAAGGCTCAGTCTGAAGAAGAAATGGCCCAAACAAAAGGAGAGATGCTGACACAGCTccttaagACCCACATTATGAAGAGCAAATTTAACCTGCACAAGTTGAACCAGCAGTGGCGTTCGAACCTGCGCCAGACTCGAGCATCAGAGCTGCGTGAAGATTTCGCAATACTCAGCCAAACTTTAAAAAGAGTTGTGGACTTCAAGGACAATGTTATTAAGTTATTGGTGTGTGATCTGAGCGAAGCGGAGCAGCAGTCAGAACTGGCTCACAGGGCTCATCTCCAGTGTGTGGATCATCTGCTGGAGGTACAGAAAAGCCGACTGGCAGCACTAGAGTCACACTGGAGCACCAGTCTTAAGGAACTCAGTACTGAGTACAACACAGAGAGgaaaCAACTTTTGAATCTGCATCAGAAGGAGAGTGACTACCTCAAGGCAGAAAACTTTGCCTTGGAGCAGCGCTATGCTGAATTAGACAGTGAGGCCAGACAGGACTATCAGCTTGCACATGATGACATCAAAAACCGGTATATTGGCACGAAGCATGTAATGGAAAGCACATTGGAGGAGTTGCGGCAGTGGTACCTACGAGAACTGCAGAAGTACACAAACGCCACTGATGATCGAAAGAAAACAGCTCTAAATTTGCAATGCGCCATCCAGAAAAGAAACTTGAAGAGGAGGCACATGCAGAAATTGCAGGGCACCATTAAAGCTCTGCGTTCTCATCTGAGCACCAATCAGAGGGAAAATGAGGCATCTGCGTGTGGCCTTCGGGCAGAATGTGAGGAAATTACACAGGAAGTCCAACAGCTCAGAGCTAAGCTCTGCTCTGCACAGGCAGCTGAAAGAACACAGCTAGCTAATCACACTATATACAGCGATAACACAATTAAGAAACTACAGGATATTATAGGAGAGGGAGAGACATTGTTACGTCTGGCTGATGTGTGTCGCAAGCTTGAAACTGAGCAGGAGAAGGTGCTTCCCTTTTACACATCATCTTTATCTGCTGAGGAACTGAGTCAGGAGAAAGCACATGCTATGGAGGCAATGTCTGAAGAGCTAGTACAGACAATGATGGACTATACAGATCTAGAAAAGTTCTGGCAGCGTTACAACAAGGTTCTACTGGAACGTTTGTGTTTAGAACGGGAGAAGAAGGTCCTCAGATGGGAGAACCAGCAGCTGAGGATTCTTCTCAAGCAGTACCTGGATGGAATCTCTGTTAACGACGAGATCCTACAGCAGAGGAACTCACTGCTCATGTTGTCCTGCCCATCACTCCAAGCCTCTCCTGCTTCAgaaagccaaacacacacaagcaggaCAGTCACAGAGGCGTCTCATGTGGTGCAGCATACACTGTAGAGACGAtatcaaaataaaagcaaatataaaaCCAATATTATTCCAAAGACCAAGTTTGAGTCACTTGAGATGTTCTGCTTTTAACTTTATACAGTAATCATGCACTCTGGTGTTCTACAGTACCGGGATGCAGCTATAACTGCTCTAACTAACTCTTCTGTGCATGTCTGTGGGGAAGCTTCTGACATTAACACTAAGACATCGACAGTTTGCCTCCTGATTCCCAACTAGCACAGAACATGTAAAGTAAAGCCATTTgccatt
>XM_034298371.1
CCAGCATCTTTTACATTAGCAGCTCAGCCATTTCACTAACATGCTAGCTAATGTCTAGTAGTAACTTTTTATCATGGAAATTAAGTTACAAAGTACTAGCAGCTAAGACTAGGCTATTATTCTGTGTAACCCAGTAGCCAACATGATAAGCAAGCTAACTGTTCTGTAATTCAAACATTTTGCTAGCAAGTTAGCTAATAAACAGTATGTTGTGTAATTCAAGCCAGTGGCCAAATTCACTATAAATAGTACACAATTCTGTTTGGGTGATAAAAGAAAGACTGATTTGCACCCAGtttttggtttttttcagGACAGGTTTGAAATAGAGCAGTTAGGAAGGAGGCAATAAGAGAGGAGGTGGAAAGCAGAAGGCAGAAGGCTCAGTCTGAAGAAGAAATGGCCCAAACAAAAGGAGAGATGCTGACACAGCTccttaagACCCACATTATGAAGAGCAAATTTAACCTGCACAAGTTGAACCAGCAGTGGCGTTCGAACCTGCGCCAGACTCGAGCATCAGAGCTGCGTGAAGATTTCGCAATACTCAGCCAAACTTTAAAAAGAGTTGTGGACTTCAAGGACAATGTTATTAAGTTATTGGTGTGTGATCTGAGCGAAGCGGAGCAGCAGTCAGAACTGGCTCACAGGGCTCATCTCCAGTGTGTGGATCATCTGCTGGAGGTACAGAAAAGCCGACTGGCAGCACTAGAGTCACACTGGAGCACCAGTCTTAAGGAACTCAGTACTGAGTACAACACAGAGAGgaaaCAACTTTTGAATCTGCATCAGAAGGAGAGTGACTACCTCAAGGCAGAAAACTTTGCCTTGGAGCAGCGCTATGCTGAATTAGACAGTGAGGCCAGACAGGACTATCAGCTTGCACATGATGACATCAAAAACCGGTATATTGGCACGAAGCATGTAATGGAAAGCACATTGGAGGAGTTGCGGCAGTGGTACCTACGAGAACTGCAGAAGTACACAAACGCCACTGATGATCGAAAGAAAACAGCTCTAAATTTGCAATGCGCCATCCAGAAAAGAAACTTGAAGAGGAGGCACATGCAGAAATTGCAGGGCACCATTAAAGCTCTGCGTTCTCATCTGAGCACCAATCAGAGGGAAAATGAGGCATCTGCGTGTGGCCTTCGGGCAGAATGTGAGGAAATTACACAGGAAGTCCAACAGCTCAGAGCTAAGCTCTGCTCTGCACAGGCAGCTGAAAGAACACAGCTAGCTAATCACACTATATACAGCGATAACACAATTAAGAAACTACAGGATATTATAGGAGAGGGAGAGACATTGTTACGTCTGGCTGATGTGTGTCGCAAGCTTGAAACTGAGCAGGAGAAGGTGCTTCCCTTTTACACATCATCTTTATCTGCTGAGGAACTGAGTCAGGAGAAAGCACATGCTATGGAGGCAATGTCTGAAGAGCTAGTACAGACAATGATGGACTATACAGATCTAGAAAAGTTCTGGCAGCGTTACAACAAGGTTCTACTGGAACGTTTGTGTTTAGAACGGGAGAAGAAGGTCCTCAGATGGGAGAACCAGCAGCTGAGGATTCTTCTCAAGCAGTACCTGGATGGAATCTCTGTTAACGACGAGATCCTACAGCAGAGGAACTCACTGCTCATGTTGTCCTGCCCATCACTCCAAGCCTCTCCTGCTTCAgaaagccaaacacacacaagcaggaCAGTCACAGAGGCGTCTCATGTGGTGCAGCATACACTGTAGAGACGAtatcaaaataaaagcaaatataaaaCCAATATTATTCCAAAGACCAAGTTTGAGTCACTTGAGATGTTCTGCTTTTAACTTTATACAGTAATCATGCACTCTGGTGTTCTACAGTACCGGGATGCAGCTATAACTGCTCTAACTAACTCTTCTGTGCATGTCTGTGGGGAAGCTTCTGACATTAACACTAAGACATCGACAGTTTGCCTCCTGATTCCCAACTAGCACAGAACATGTAAAGTAAAGCCATTTgccatt
>XM_034298377.1
CCCAGCAGAACCTATTCAGCTTCACCATGGGTTGCCTAGAAACagttaatataaaaacaaacaatcaacATAAACAAGAAATGTAACTGTAATCAATGATCAGGGAGATTAGGACAGGTTTGAAATAGAGCAGTTAGGAAGGAGGCAATAAGAGAGGAGGTGGAAAGCAGAAGGCAGAAGGCTCAGTCTGAAGAAGAAATGGCCCAAACAAAAGGAGAGATGCTGACACAGCTccttaagACCCACATTATGAAGAGCAAATTTAACCTGCACAAGTTGAACCAGCAGTGGCGTTCGAACCTGCGCCAGACTCGAGCATCAGAGCTGCGTGAAGATTTCGCAATACTCAGCCAAACTTTAAAAAGAGTTGTGGACTTCAAGGACAATGTTATTAAGTTATTGGTGTGTGATCTGAGCGAAGCGGAGCAGCAGTCAGAACTGGCTCACAGGGCTCATCTCCAGTGTGTGGATCATCTGCTGGAGGTACAGAAAAGCCGACTGGCAGCACTAGAGTCACACTGGAGCACCAGTCTTAAGGAACTCAGTACTGAGTACAACACAGAGAGgaaaCAACTTTTGAATCTGCATCAGAAGGAGAGTGACTACCTCAAGGCAGAAAACTTTGCCTTGGAGCAGCGCTATGCTGAATTAGACAGTGAGGCCAGACAGGACTATCAGCTTGCACATGATGACATCAAAAACCGGTATATTGGCACGAAGCATGTAATGGAAAGCACATTGGAGGAGTTGCGGCAGTGGTACCTACGAGAACTGCAGAAGTACACAAACGCCACTGATGATCGAAAGAAAACAGCTCTAAATTTGCAATGCGCCATCCAGAAAAGAAACTTGAAGAGGAGGCACATGCAGAAATTGCAGGGCACCATTAAAGCTCTGCGTTCTCATCTGAGCACCAATCAGAGGGAAAATGAGGCATCTGCGTGTGGCCTTCGGGCAGAATGTGAGGAAATTACACAGGAAGTCCAACAGCTCAGAGCTAAGCTCTGCTCTGCACAGGCAGCTGAAAGAACACAGCTAGCTAATCACACTATATACAGCGATAACACAATTAAGAAACTACAGGATATTATAGGAGAGGGAGAGACATTGTTACGTCTGGCTGATGTGTGTCGCAAGCTTGAAACTGAGCAGGAGAAGGTGCTTCCCTTTTACACATCATCTTTATCTGCTGAGGAACTGAGTCAGGAGAAAGCACATGCTATGGAGGCAATGTCTGAAGAGCTAGTACAGACAATGATGGACTATACAGATCTAGAAAAGTTCTGGCAGCGTTACAACAAGGTTCTACTGGAACGTTTGTGTTTAGAACGGGAGAAGAAGGTCCTCAGATGGGAGAACCAGCAGCTGAGGATTCTTCTCAAGCAGTACCTGGATGGAATCTCTGTTAACGACGAGATCCTACAGCAGAGGAACTCACTGCTCATGTTGTCCTGCCCATCACTCCAAGCCTCTCCTGCTTCAgaaagccaaacacacacaagcaggaCAGTCACAGAGGCGTCTCATGTGGTGCAGCATACACTGTAGAGACGAtatcaaaataaaagcaaatataaaaCCAATATTATTCCAAAGACCAAGTTTGAGTCACTTGAGATGTTCTGCTTTTAACTTTATACAGTAATCATGCACTCTGGTGTTCTACAGTACCGGGATGCAGCTATAACTGCTCTAACTAACTCTTCTGTGCATGTCTGTGGGGAAGCTTCTGACATTAACACTAAGACATCGACAGTTTGCCTCCTGATTCCCAACTAGCACAGAACATGTAAAGTAAAGCCATTTgccatt
>XM_034298386.1
CTACCTTACCACAGCACTGCACTGATGTTGCTAAGACAGGTTTGAAATAGAGCAGTTAGGAAGGAGGCAATAAGAGAGGAGGTGGAAAGCAGAAGGCAGAAGGCTCAGTCTGAAGAAGAAATGGCCCAAACAAAAGGAGAGATGCTGACACAGCTccttaagACCCACATTATGAAGAGCAAATTTAACCTGCACAAGTTGAACCAGCAGTGGCGTTCGAACCTGCGCCAGACTCGAGCATCAGAGCTGCGTGAAGATTTCGCAATACTCAGCCAAACTTTAAAAAGAGTTGTGGACTTCAAGGACAATGTTATTAAGTTATTGGTGTGTGATCTGAGCGAAGCGGAGCAGCAGTCAGAACTGGCTCACAGGGCTCATCTCCAGTGTGTGGATCATCTGCTGGAGGTACAGAAAAGCCGACTGGCAGCACTAGAGTCACACTGGAGCACCAGTCTTAAGGAACTCAGTACTGAGTACAACACAGAGAGgaaaCAACTTTTGAATCTGCATCAGAAGGAGAGTGACTACCTCAAGGCAGAAAACTTTGCCTTGGAGCAGCGCTATGCTGAATTAGACAGTGAGGCCAGACAGGACTATCAGCTTGCACATGATGACATCAAAAACCGGTATATTGGCACGAAGCATGTAATGGAAAGCACATTGGAGGAGTTGCGGCAGTGGTACCTACGAGAACTGCAGAAGTACACAAACGCCACTGATGATCGAAAGAAAACAGCTCTAAATTTGCAATGCGCCATCCAGAAAAGAAACTTGAAGAGGAGGCACATGCAGAAATTGCAGGGCACCATTAAAGCTCTGCGTTCTCATCTGAGCACCAATCAGAGGGAAAATGAGGCATCTGCGTGTGGCCTTCGGGCAGAATGTGAGGAAATTACACAGGAAGTCCAACAGCTCAGAGCTAAGCTCTGCTCTGCACAGGCAGCTGAAAGAACACAGCTAGCTAATCACACTATATACAGCGATAACACAATTAAGAAACTACAGGATATTATAGGAGAGGGAGAGACATTGTTACGTCTGGCTGATGTGTGTCGCAAGCTTGAAACTGAGCAGGAGAAGGTGCTTCCCTTTTACACATCATCTTTATCTGCTGAGGAACTGAGTCAGGAGAAAGCACATGCTATGGAGGCAATGTCTGAAGAGCTAGTACAGACAATGATGGACTATACAGATCTAGAAAAGTTCTGGCAGCGTTACAACAAGGTTCTACTGGAACGTTTGTGTTTAGAACGGGAGAAGAAGGTCCTCAGATGGGAGAACCAGCAGCTGAGGATTCTTCTCAAGCAGTACCTGGATGGAATCTCTGTTAACGACGAGATCCTACAGCAGAGGAACTCACTGCTCATGTTGTCCTGCCCATCACTCCAAGCCTCTCCTGCTTCAgaaagccaaacacacacaagcaggaCAGTCACAGAGGCGTCTCATGTGGTGCAGCATACACTGTAGAGACGAtatcaaaataaaagcaaatataaaaCCAATATTATTCCAAAGACCAAGTTTGAGTCACTTGAGATGTTCTGCTTTTAACTTTATACAGTAATCATGCACTCTGGTGTTCTACAGTACCGGGATGCAGCTATAACTGCTCTAACTAACTCTTCTGTGCATGTCTGTGGGGAAGCTTCTGACATTAACACTAAGACATCGACAGTTTGCCTCCTGATTCCCAACTAGCACAGAACATGTAAAGTAAAGCCATTTgccatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926224.2 False 1831 mRNA 0.45 9 13738543 13742554
XM_026926234.2 False 1815 mRNA 0.45 9 13738543 13742560
XM_034298371.1 True 2013 mRNA 0.44 9 13738543 13742258
XM_034298377.1 False 1812 mRNA 0.45 9 13738543 13742552
XM_034298386.1 False 1734 mRNA 0.46 9 13738543 13742326

Neighbor

gene id symbol gene type direction distance location
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding downstream 11469 13707454 ~ 13727074 (-)
rplp2 NA coding downstream 108997 13626968 ~ 13629546 (-)
ngfb ngf,ngfb,LOC103031633 coding downstream 194409 13532981 ~ 13544134 (-)
tspan2a NA coding downstream 207908 13516180 ~ 13530635 (-)
si:ch211-105j21.9 NA coding downstream 245284 13490194 ~ 13493259 (-)
cfap100 cfap100 coding upstream 288204 14030764 ~ 14044325 (-)
LOC113531636 chst13,LOC106565240,LOC104944027 coding upstream 387281 14129841 ~ 14147849 (-)
txnrd3 txnrd3,LOC105934676 coding upstream 415824 14158384 ~ 14172056 (-)
plxna1b plxna1 coding upstream 535489 14278049 ~ 14457232 (-)
trnae-cuc_5 NA coding upstream 649720 14392280 ~ 14392351 (-)
G26970 NA non-coding downstream 43723 13647447 ~ 13694820 (-)
G26985 LOC108271615 non-coding downstream 52761 13684123 ~ 13685782 (-)
G26788 LOC108271946 non-coding downstream 169607 13510376 ~ 13568936 (-)
G26613 NA non-coding downstream 562384 13175077 ~ 13176159 (-)
G26610 NA non-coding downstream 568881 13169253 ~ 13169662 (-)
G27016 NA non-coding upstream 46233 13788793 ~ 13791366 (-)
G27043 NA non-coding upstream 93270 13835830 ~ 13836482 (-)
G27105 zxdc non-coding upstream 284742 14027302 ~ 14028884 (-)
LOC117599875 NA non-coding upstream 321396 14063956 ~ 14099689 (-)
G27168 NA non-coding upstream 414378 14156938 ~ 14158099 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 91366 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 103799 13632262 ~ 13634744 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 236373 13493512 ~ 13502170 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 1974408 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 2253074 11442471 ~ 11485469 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 122384 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 307841 14050401 ~ 14058445 (-)
pxmp4 pxmp4,LOC103464829 other upstream 1130388 14872948 ~ 14875990 (-)
G27843 NA other upstream 1554749 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 1714075 15456635 ~ 15461001 (-)

Expression


Co-expression Network