ppm1j (ppm1j,LOC108427592,LOC107666087,LOC107668166,LOC107729744,LOC107708158)


Basic Information

Item Value
gene id ppm1j
gene name ppm1j,LOC108427592,LOC107666087,LOC107668166,LOC107729744,LOC107708158
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13234936 ~ 13251911 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926279.2
ACCGCCTCATCCTCCAGGTCCCCCTCCCTCGATTTTGCACACGCTGTAGAGACATTTCGTTTCCAGCTACCAGACCGACATGCAGAACTTGTGTGCCTCCTCAGAGCCTTTCGGATGATCCACACTCGATCGGGCGAGGATTTTTTTTCCGCTATGAGGAGACCATCGTTTGTTAGAACGTCACACGAGCTCAGGAGCGCTGGCTTCCTGCACCGCGCCTCGCCCGCTGCGCCGCTGCGTTTTTCCTTTTAGCTCTCCGAGTTCCGCGCGCTGCAACACCGCACCACAATGATTAGCAAAGTGAAAAACGCCATGTCCTCGCTGGTGGGCGGCATCGTCCCGCAcggccaccaccaccaccaccatcatcatcctcagcagcagcagcagcagagcgGAGCGGACTCTCTGCCCCCGCGCTTCCCGTACGCGCGGCCCGACTTTCTGGAGCTGAGCGCTGAGTTGGTGCAGTACGCGGCCGAGCACGCATCCCGGCCCGTCATTATACTCCGGAGAGACGCCAAGATGCCCTGGCGCACTGGATATGCAGAGGTGATAAATGCAGGAAAGAGTATGCTGAATGAGGACCAGGCCTCGTGTGACGTGCTATACGTGAAGAAGCTCACTAGCAAACAGCAGCGTGCCTCCGTGCTACTAGAAGACAGTGGGGACACCACAGGTATCCCGATGCACTTCTGGGGTGTATTTGATGGTCACGCCGGTACTGGAGCCGCGCTCATGGCCTCCAAACTCCTCCATCGTCTCATCCGAGACCGTTTGTGTGAAGTAGCCCATCTTTTGGAGAATCAGAGCAGCCCACCACCCATCTGCCTAGCTAAGAACGGTAGTCCTTATCAGGCTGAGCAAAAGAAGGGATCCTGCATGGATGCAGAAGACCAGGATGGGCCTGTAGATCCCATCGCTCGGTTCCACATGGAGAAAGTTGTCAATCTGGAAAGCCTGGTGATGGGAATCATAGAGAATGCCTTCAAACAGATGGATGACCTCATTGAAAAGGAGAAGGCATCTTACAGCATTTCTGGAGGATGTTGTGCCTTGACTGCTGTGCATTTGTTAGGGAAACTCTACGTAGCAAATGCAGGTGACAGCAGAGCCATAATTGTTCGCAATGATGAGATTATTCCCATGTCTAATGAGTTCACaccagagagtgagagacagcgGCTGCAGTACCTGGGATTCCTTAAACCAGAACTGCTTGGAAACGAGTTCACACACATTGAGTTTCCCCGACGCATTCAGCACAATGAACTAGGCAAGAAGATGTTATTTAGAGACCACACCATGACTGGGTGGGCATATAAGACAATTATTGAAGATGACCTCAAGTTCCCCCTAATTTATGGAGAGGGGAAAAAGgCCCGAGTCATGGCCACGATTGGAGTAACACGTGGTTTAGGTGATCATGATCTGAAAGTGTACAATTCGAACATTCATATCAAACCTTTCCTATCCTGCTGTCCAGAGGTGAAAGTATACAATATTTCAGAGCACAAGCATGGCTGTGATGACGTCCTCATTATGGGCACTGACGGATTGTGGGATGTGACTTCTGATCAAGAAGTAGCAGATGCAGTGACAAAATTTCTGTCCTGCTGTGAGCCTAATGACCCAATGAGGTATACTTTGGCTGCTCAGGATCTCCTAATGAGGTCTCGTGGTGTTCTGAAAGAGCGGGGTTGGAGGCTGCCCAATGACAGACTGGGATCAGGTGATGACATAACAGTGTTTGTCATCCCATTGGCTGGGGCCGAGTCAGAGACATGATAAGGCAGATCAGTTCCTCTCTGGTGAGCAAATCAGGACACGGCGCTAATTTGCGCCGGCTGAGGAAGGGGTGCAATACCAAAAAATCCATTCTCACTTGAGCTGAAGGGAAAGACGTACGCAttgctcctcttcctccaaCTTCCTCCGAGGAATCATCTCGACTCTTACCTCTTCTTATCAAGCCCGGGATGACATCATCATTAAGTGCCACTCTTCTCACTcaacatttctcacagatttaCTGTGAAAGACTTCAGAATTCACAAAGCCgctgtgatatacagtatatactctGGAAGTCTATTTGGGTGTGAGCCACGATAAGAAGAGAGATTACTGCTAGGTGAATAAACAGGGTCTTTTATACAGGACCTGAAGAAGACCGAGGAATGGGACACTGGTGAAATGAGATGAAATCTTGATGATTAAGGATGTATAGATGAAAGCACTTTATCTTTAGGCATAAACTCATCATCCTGTAATTAAACAAATTCTCCCTCAGCTCATTTAAATGTCTCCAAAGAATGTGTCTATGTAAACACATGCATTTCAGAGACTTTGCAGCAGCTTTATTAAGAAACAAATGTTCACCAACAAAAGAAGGAAAGCACAATTTTCTCATTAGTCCTGATAATGACAGGGTCAAACACATCTCCTTTGGAAAGGAACAATAATATTGTGATTGAGGCAATTGTGTAGAATTGTATTGTGGCACTtatgggcagtggtagctcgTTGGTTAAGATGCTGGACTACTGATTTGAAGATcatgaattcaaatcccagcgccatcaagctgccactgctgggcaaggcccttaaccctcagctgttcatttatataaatgagataaaatgtaagtttctctggtgtctgccaaatgccataaatgtaaatgagacaTACTACTGTAACCATGACAAAGCTTCTGGAAATTAGTGGCCATCATTTCAACTCTTGCACATTTGACTAAACCCGGGTTCCCTACCTCTCCACAAAGCCATGTTCACAATGAACCTAAAAACTTGCAAGGAGGTGGATTTTTGATTATAATCAAACCCAGATGCATTATTTGTGCACACTACTTTTCACTTAATCTGTAGTTTATGGGCTAGCTTTTTTCTGAGCCAAGTTTAGAAGCTTATTATATATTGAGAATCCCTATTAAAGCAGCTTTTAGTCCAAGATCAGCACTTATATGGAACCTAGAAACTTACCGTTCatgatgaatttattattataatatattgttACTATAACATTCACCTGACGTACCATATTTGTAAAAATGGGTTGAAAAGGGTTTTAGGTGGCAGCTAGATTACTACAAATGATGTTTTAATGCCAATACATCTCAACATTAGAACCAAGGTCCTGAACATCAACACCTGAACTTTATTTCAATATACCATGCTTAAATGATCTTGAAGTGAACAACCAATTGTGAATATAAATCTGAACATTTGAACTGATGGCTGACTGCtaacaaactttattttttgctaTAACATGTTTAGTTGCATTACCAATCCTGCTGACTGTTTTATCATTTGTCAAGCTGTAACACCTAAGCAACTGTGATTCCTTCACAATAAATCTCCCATctttgaataaatta

Function

symbol description
ppm1j Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Orthologous to human PPM1J (protein phosphatase, Mg2+/Mn2+ dependent 1J).

NR:

description
protein phosphatase 1H-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926279.2 True 3410 mRNA 0.45 10 13234936 13251911

Neighbor

gene id symbol gene type direction distance location
rhoca rhoc,LOC108427591,LOC103035456,LOC108271788,LOC105908082,LOC107729745,LOC107668165,LOC105902219 coding downstream 3196 13214941 ~ 13231740 (-)
capza1a capza1,LOC108271791,LOC103046653,LOC106566046,LOC105908306,LOC106582739 coding downstream 45387 13177828 ~ 13189549 (-)
st7l st7l,LOC103035765,LOC106582738,LOC106566045 coding downstream 61266 13161489 ~ 13173670 (-)
slc2a1b LOC108427584,LOC108272033,LOC103036684,LOC106565867,LOC103355644,LOC106518313,LOC108231650 coding downstream 176169 13042395 ~ 13058767 (-)
si:dkey-166d12.2 LOC108271835,LOC108427581 coding downstream 203891 12949685 ~ 13031045 (-)
si:ch211-105j21.9 NA coding upstream 238283 13490194 ~ 13493259 (-)
tspan2a NA coding upstream 264269 13516180 ~ 13530635 (-)
ngfb ngf,ngfb,LOC103031633 coding upstream 281070 13532981 ~ 13544134 (-)
rplp2 NA coding upstream 375057 13626968 ~ 13629546 (-)
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding upstream 455543 13707454 ~ 13727074 (-)
G26613 NA non-coding downstream 58777 13175077 ~ 13176159 (-)
G26610 NA non-coding downstream 65274 13169253 ~ 13169662 (-)
G26585 NA non-coding downstream 128850 13104457 ~ 13106086 (-)
G26570 NA non-coding downstream 164113 13070595 ~ 13070823 (-)
G26387 NA non-coding downstream 433703 12801007 ~ 12801233 (-)
G26788 LOC108271946 non-coding upstream 258465 13510376 ~ 13568936 (-)
G26970 NA non-coding upstream 395536 13647447 ~ 13694820 (-)
G26985 LOC108271615 non-coding upstream 432212 13684123 ~ 13685782 (-)
G27016 NA non-coding upstream 536882 13788793 ~ 13791366 (-)
G27043 NA non-coding upstream 583919 13835830 ~ 13836482 (-)
LOC113526127 LOC108272031,LOC108431803 other downstream 1470801 11686745 ~ 11764135 (-)
kif5ab kif5a other downstream 1749467 11442471 ~ 11485469 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 2300772 10916042 ~ 10934164 (-)
G24760 NA other downstream 2744641 10489293 ~ 10490295 (-)
G24516 NA other downstream 3366658 9863367 ~ 9868278 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 241601 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 380351 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 388470 13640381 ~ 13647177 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other upstream 613033 13864944 ~ 13907189 (-)
G27107 LOC108272123 other upstream 798490 14050401 ~ 14058445 (-)

Expression


Co-expression Network