lrrc8c (lrrc8c,LOC108272152,LOC108413226,LOC103030093,LOC107749978,LOC107593158,LOC107698887)


Basic Information

Item Value
gene id lrrc8c
gene name lrrc8c,LOC108272152,LOC108413226,LOC103030093,LOC107749978,LOC107593158,LOC107698887
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18116405 ~ 18126912 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927028.2
AGTATTAAAGAAAAGCTTGACTCGGTTGACGACAGCCTCCGGCGGCGGAGAAGGTCACTGCAGCTCATTTGTGATTTgagcaggaagagagagagagagagggagagagagagagagacgaggtCTACACCGCAGTCCCAAGGACATGCCGCCTCCCTCCTTCATTTATCCCCTAAAAACCCGCTCGTGCTCTTCCATTTTCGGgTCCCATTTCCTGCCAGGAAAGGGACCGACAGGAGAATAAAGAAGTGTAAAGCTTTCCAGGTCCCTGATGCTCGAGCTTGGTGTAATCTCACGGAACAGCGAGCAGCCCACGAAGATTTTCAAAATAATCCTGAAGATTTGCGTTTCGTAAGGCGAACTAAGTATGATGAAAATGATTCCGGTCACGGAATTCCGTCAGTTCTCAGAACAGCAGCCGGCGTTCCGAGTCCTAAAGCCATGGTGGGATGTCTTCGCCGAATATCTCTCTGTGGTCATGCTCATGATTGGCGTGTTTGGCTGCACGCTGCAGGTAATGCAGGACAAAATCATATGTCTTCCTCAAAGGGTGTCTGCCCCAAACCAAACGGTGCCTTCACTGAATCAGACGGAGCTCACAAGGGATCCAACCAATTCCTCTCTTCCCCCTGTCTCCCCAGTGCCTGTATCCTATGAGATGAAGGGACTCAAAACCAATTTGGATCTGCAGCAGTACAGCTTTGTAAATCAACTGTGCTATGAAAAAGCTCTGCATTGGTATGCCAAGTATTTTCCTTACCTGGTGCTCATACATACCCTTGTATTCATGGCGTGCAGTAATTTCTGGTTCAAATTCCCTGGCTCAAGCTCAAAAATTGAGCACTTCATCTCCATATTGGGCAAATGTTTTGATTCTCCATGGACTACGAGGGCTTTGTCTGAGGTGTCAGGAGAGAGTCCGGAGGAGAAAGACCACAAAAAGAACAGTGCAAGTAGATCAAACCTTAATACTTCCACTGGGGAGGGTAATCTGGAGAAGACCCAATCGCTGAGATCTATTCCTGAAAGGATCGTAGTGGACAAACCAACAGCGAGTGCACTTGACAAGAAGGAAGGAGAGCAAGCCAAAGCGCTGTTTGAGAAGGTAAAAAAGTTCCGACTTCACGTGGAGGAAGGGGATTTGTTGTATCTCATGTATGTTCGACAGACTGTAATTAAAGTGATCAAGTTTGTTCTTATAGTAGCCTACAACAGTGTTCTGGTGTCGAAGGTTAGAATTACAGTTCAGTGTGAAGCAGACGTAGAGAATATGACGGGCTACAAAAAATTTTTGTGCAATCACACCATGGCCCATCTCTTCTCCAAGCTCTGCTACTGCtatttgtgttttgtaattGTCTATGGATTAACATGCCTTTATACATCATACTGGCTTTTCTACCGTTCTCTGAAAGAGTACTCTTTTGAATACGTGCGGCAGGAGACTGGAATTGACGACATCCCGgatgtgaaaaatgattttgcttttatgttgCACATGATTGACCAATATGATCCACTGTATTCCAAGAGGTTTGCAGTGTTTCTGTCTGAGGTGAGTGAAAACAAGCTAAAACAACTCAATCTGAACCATGAGTGGACAGTAGAAAAACTTCGCCAAAAGCTACAGACCAATGCCAGTGACCGACTGGAGCTTCAGCTCTTCATGCTCTCAGGGCTTCCAGATACAGTCTTCGAGGTCATTGAGCTGCAATCCTTGAAATTGgagattataaataatgtcacaaTCCCTGCAGCCATTTCCCAGCTAGAAGATCTTCAGGAGCTTTCTCTGCACCAGTGCACACTCAAAATCCACACAGGGGCCCTCTCTTTCCTGAAAGAAAACCTTAAAGTTCTGCGTGTGAAGTTTGATGACAACCGTGAGCTTCCTCTGTGGCTCTACAGTCTTCGGAACTTAGAGGAACTCCATCTAATCGGATCTCTGAGTCCAGATGCATCAAAGAACATAACCCTGGACTCTTTACGTGACCTCAAGTCCCTTAAGACCTTGACACTCAAAAGCAACCTTACGAAGATCCCCCAGTCAGTTGTGGATGTGTCCAGCCACCTGCAGCGTCTGTATGTGCACAATGACGGCACCAAGCTGGTCATGCTGAACAACCTCAAGAAAATGGTGCATCTTATAGAGCTTGAGCTGGTTCATTGTGACCTTGAACGCATTCCGCATGCTATCTTCAGTCTGACCCACCTGCAGGAGCTGGACCTTAAGGAGAACAGCTTGCGCTCTGTtgaggagatcatcagtttccaGCACCTCCGGAAACTCACGTGCCTAAAGCTGTGGCACAATGCAATCACTCACATCCCTGAGCATATCAAGAAGCTGAGCAGTTTGGAGCGCCTCTATTTTAGCCACAACAAGATTGAGATTTTGCCCTCGCACCTGTTTCTGTGCAACAAGCTACGCCATCTTGACCTTTCCCACAATGACATCAGCTTCATTCCTCCAGAAGTAGGTGTTCTGCAGAGCCTTCAGTACTTCTCCCTCTCTAGCAACAAAATCGAGAACCTCCCAGATGAACTGTTCTTCTGCAAGAAGCTGAAGACCCTCAAGCTCGGGAGGAACATGCTTTCTGTGCTCTCACCAAAGATTTCCTACCTGGCTTCACTGACTTATTTGGAGTTAAAGGGCAATCATTTTGAAGTTTTGCCAGCTGAGCTTGGCTGCTGTCAAGCCTTGAAGCGCAGTGGCCTTGTGGTAGAAGACACCCTCTTTGACACTCTGCCTTCAGAAGTCAGGGATAATATGAAAGCAGAGTGATGTTTCTTAGCCTTGGTAAAATTcctcaaatgtttaaaaaaaggcagCATTACGAATTCTTTTTAACTGAACTTGTATCCCACTCCCACACATATTTTGACTTTACGGGTGAGTAGATGCTTTTAAATGCTTAGATATTTGAAAGCAAATGTTATCTTATTAACAAAAGCAAGTCTCTTTGGAGTAGAATTTAGTGTTGTATTGTACCTCAAAGTTGATGTAGTTGTTTCAATGTTTTAAGACAATGTTACATTAGATCATTCATTTATATAAGCACCTTATTATGTGTAATTCTCTACCATATCAAAGAATAGAGATAAGCCTCAGTGTTAATGTGTATTCCAAGACAGTCATTGCATTGCATGTGTTATATTACTAATAATGTTGAGGATATCATTATCTATGTCAAGGTTTTACAAAACAAGTACTGAACCATGCTAGGCTGCCAAAGTGCAGTATTTTACCTTTGTAAAGACCAAATGACCTTTGCAGCCTCTTTAAGGTTGCTAACAGTGATAGATGGAGAAGGGCTTTTCATGTGTAGTGGTTATATGCCATACAATTTTGGACATTTAGGCCAGATCTGTCACAACTCTTTTGTTTGAAGCCGATCATGTAAAATGACTCATTGTCCCAGTTTTTACACTAAACCAAGTTCAGTGAGTGAGTGGCTCCTGTAATAGAAACAGACTGGAATACCAGGCTACTACAGAGGTTCTACCATGCACAGTTTATCTGTGGCATTTATGATATTTCTCCTTTTGTTACATCaaaactatgatttttttttttttttttttcctccacataAACATCAGTCAGACCAAACATAAATTTCACAGTGCAGAAAAGttaattcactgaaggggaaaggacgtgaAAATCATTGTTTCTGGTAGCGGGGAACTTTTTCGCTGACTTTATCCATGAGAACAATGATTTTGTAAATTCACAAGCCttggtcttgtgagccaatagtaACCTAGTGGGTGGTACCATAGTCTCTCTGGTCAGCAAATAAAATGGAGGAGCTGTTTAGTTTTTA
>XM_026927035.2
GTATTAAAGAAAAGCTTGACTCGGTTGACGACAGCCTCCGGCGGCGGAGAAGGTCACTGCAGCTCATTTGTGATTTgagcaggaagagagagagagagagggagagagagagagagacgaggtCTACACCGCAGTCCCAAGGACATGCCGCCTCCCTCCTTCATTTATCCCCTAAAAACCCGCTCGTGCTCTTCCATTTTCGGgGAAAATGATTCCGGTCACGGAATTCCGTCAGTTCTCAGAACAGCAGCCGGCGTTCCGAGTCCTAAAGCCATGGTGGGATGTCTTCGCCGAATATCTCTCTGTGGTCATGCTCATGATTGGCGTGTTTGGCTGCACGCTGCAGGTAATGCAGGACAAAATCATATGTCTTCCTCAAAGGGTGTCTGCCCCAAACCAAACGGTGCCTTCACTGAATCAGACGGAGCTCACAAGGGATCCAACCAATTCCTCTCTTCCCCCTGTCTCCCCAGTGCCTGTATCCTATGAGATGAAGGGACTCAAAACCAATTTGGATCTGCAGCAGTACAGCTTTGTAAATCAACTGTGCTATGAAAAAGCTCTGCATTGGTATGCCAAGTATTTTCCTTACCTGGTGCTCATACATACCCTTGTATTCATGGCGTGCAGTAATTTCTGGTTCAAATTCCCTGGCTCAAGCTCAAAAATTGAGCACTTCATCTCCATATTGGGCAAATGTTTTGATTCTCCATGGACTACGAGGGCTTTGTCTGAGGTGTCAGGAGAGAGTCCGGAGGAGAAAGACCACAAAAAGAACAGTGCAAGTAGATCAAACCTTAATACTTCCACTGGGGAGGGTAATCTGGAGAAGACCCAATCGCTGAGATCTATTCCTGAAAGGATCGTAGTGGACAAACCAACAGCGAGTGCACTTGACAAGAAGGAAGGAGAGCAAGCCAAAGCGCTGTTTGAGAAGGTAAAAAAGTTCCGACTTCACGTGGAGGAAGGGGATTTGTTGTATCTCATGTATGTTCGACAGACTGTAATTAAAGTGATCAAGTTTGTTCTTATAGTAGCCTACAACAGTGTTCTGGTGTCGAAGGTTAGAATTACAGTTCAGTGTGAAGCAGACGTAGAGAATATGACGGGCTACAAAAAATTTTTGTGCAATCACACCATGGCCCATCTCTTCTCCAAGCTCTGCTACTGCtatttgtgttttgtaattGTCTATGGATTAACATGCCTTTATACATCATACTGGCTTTTCTACCGTTCTCTGAAAGAGTACTCTTTTGAATACGTGCGGCAGGAGACTGGAATTGACGACATCCCGgatgtgaaaaatgattttgcttttatgttgCACATGATTGACCAATATGATCCACTGTATTCCAAGAGGTTTGCAGTGTTTCTGTCTGAGGTGAGTGAAAACAAGCTAAAACAACTCAATCTGAACCATGAGTGGACAGTAGAAAAACTTCGCCAAAAGCTACAGACCAATGCCAGTGACCGACTGGAGCTTCAGCTCTTCATGCTCTCAGGGCTTCCAGATACAGTCTTCGAGGTCATTGAGCTGCAATCCTTGAAATTGgagattataaataatgtcacaaTCCCTGCAGCCATTTCCCAGCTAGAAGATCTTCAGGAGCTTTCTCTGCACCAGTGCACACTCAAAATCCACACAGGGGCCCTCTCTTTCCTGAAAGAAAACCTTAAAGTTCTGCGTGTGAAGTTTGATGACAACCGTGAGCTTCCTCTGTGGCTCTACAGTCTTCGGAACTTAGAGGAACTCCATCTAATCGGATCTCTGAGTCCAGATGCATCAAAGAACATAACCCTGGACTCTTTACGTGACCTCAAGTCCCTTAAGACCTTGACACTCAAAAGCAACCTTACGAAGATCCCCCAGTCAGTTGTGGATGTGTCCAGCCACCTGCAGCGTCTGTATGTGCACAATGACGGCACCAAGCTGGTCATGCTGAACAACCTCAAGAAAATGGTGCATCTTATAGAGCTTGAGCTGGTTCATTGTGACCTTGAACGCATTCCGCATGCTATCTTCAGTCTGACCCACCTGCAGGAGCTGGACCTTAAGGAGAACAGCTTGCGCTCTGTtgaggagatcatcagtttccaGCACCTCCGGAAACTCACGTGCCTAAAGCTGTGGCACAATGCAATCACTCACATCCCTGAGCATATCAAGAAGCTGAGCAGTTTGGAGCGCCTCTATTTTAGCCACAACAAGATTGAGATTTTGCCCTCGCACCTGTTTCTGTGCAACAAGCTACGCCATCTTGACCTTTCCCACAATGACATCAGCTTCATTCCTCCAGAAGTAGGTGTTCTGCAGAGCCTTCAGTACTTCTCCCTCTCTAGCAACAAAATCGAGAACCTCCCAGATGAACTGTTCTTCTGCAAGAAGCTGAAGACCCTCAAGCTCGGGAGGAACATGCTTTCTGTGCTCTCACCAAAGATTTCCTACCTGGCTTCACTGACTTATTTGGAGTTAAAGGGCAATCATTTTGAAGTTTTGCCAGCTGAGCTTGGCTGCTGTCAAGCCTTGAAGCGCAGTGGCCTTGTGGTAGAAGACACCCTCTTTGACACTCTGCCTTCAGAAGTCAGGGATAATATGAAAGCAGAGTGATGTTTCTTAGCCTTGGTAAAATTcctcaaatgtttaaaaaaaggcagCATTACGAATTCTTTTTAACTGAACTTGTATCCCACTCCCACACATATTTTGACTTTACGGGTGAGTAGATGCTTTTAAATGCTTAGATATTTGAAAGCAAATGTTATCTTATTAACAAAAGCAAGTCTCTTTGGAGTAGAATTTAGTGTTGTATTGTACCTCAAAGTTGATGTAGTTGTTTCAATGTTTTAAGACAATGTTACATTAGATCATTCATTTATATAAGCACCTTATTATGTGTAATTCTCTACCATATCAAAGAATAGAGATAAGCCTCAGTGTTAATGTGTATTCCAAGACAGTCATTGCATTGCATGTGTTATATTACTAATAATGTTGAGGATATCATTATCTATGTCAAGGTTTTACAAAACAAGTACTGAACCATGCTAGGCTGCCAAAGTGCAGTATTTTACCTTTGTAAAGACCAAATGACCTTTGCAGCCTCTTTAAGGTTGCTAACAGTGATAGATGGAGAAGGGCTTTTCATGTGTAGTGGTTATATGCCATACAATTTTGGACATTTAGGCCAGATCTGTCACAACTCTTTTGTTTGAAGCCGATCATGTAAAATGACTCATTGTCCCAGTTTTTACACTAAACCAAGTTCAGTGAGTGAGTGGCTCCTGTAATAGAAACAGACTGGAATACCAGGCTACTACAGAGGTTCTACCATGCACAGTTTATCTGTGGCATTTATGATATTTCTCCTTTTGTTACATCaaaactatgatttttttttttttttttttcctccacataAACATCAGTCAGACCAAACATAAATTTCACAGTGCAGAAAAGttaattcactgaaggggaaaggacgtgaAAATCATTGTTTCTGGTAGCGGGGAACTTTTTCGCTGACTTTATCCATGAGAACAATGATTTTGTAAATTCACAAGCCttggtcttgtgagccaatagtaACCTAGTGGGTGGTACCATAGTCTCTCTGGTCAGCAAATAAAATGGAGGAGCTGTTTAGTTTTTA

Function

symbol description
lrrc8c Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human LRRC8C (leucine rich repeat containing 8 VRAC subunit C).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 8C

GO: NA

KEGG:

id description
K22038 LRRC8; volume-regulated anion channel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927028.2 True 3830 mRNA 0.43 4 18116405 18126912
XM_026927035.2 False 3662 mRNA 0.43 3 18116405 18126911

Neighbor

gene id symbol gene type direction distance location
lrrc8db lrrc8db,LOC108272026,LOC108413222,LOC107730703,LOC107749977,LOC107564626,LOC107675437 coding downstream 10126 18094167 ~ 18106279 (-)
znf326 znf326 coding downstream 26089 18083721 ~ 18090316 (-)
LOC117599332 NA coding downstream 321054 17794638 ~ 17795351 (-)
brdt brdt,LOC107564438,LOC106584160 coding downstream 460195 17637150 ~ 17656210 (-)
ephx4 ephx4,LOC107749983,LOC107555389,LOC107564433,LOC107678348,LOC107730701,LOC107675432 coding downstream 484261 17618116 ~ 17632144 (-)
lmo4b lmo4,lmo4b,LOC103026253,LOC107593176 coding upstream 322345 18449257 ~ 18464571 (-)
hs2st1b hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611 coding upstream 374626 18501538 ~ 18586226 (-)
trnae-cuc_6 NA coding upstream 450312 18577224 ~ 18577295 (-)
LOC113534471 LOC108271530,LOC108427638 coding upstream 489065 18615977 ~ 18623608 (-)
sox14 sox14,LOC103365676,LOC100695210 coding upstream 561686 18688598 ~ 18691082 (-)
G29237 NA non-coding downstream 273585 17784475 ~ 17842820 (-)
G29223 NA non-coding downstream 402040 17700761 ~ 17714365 (-)
G29213 NA non-coding downstream 478388 17637327 ~ 17638017 (-)
G29196 NA non-coding downstream 604950 17487361 ~ 17511455 (-)
G29176 NA non-coding downstream 648248 17454285 ~ 17468157 (-)
G29439 NA non-coding upstream 325556 18452468 ~ 18452976 (-)
G29541 NA non-coding upstream 487445 18614357 ~ 18614724 (-)
G29542 NA non-coding upstream 487957 18614869 ~ 18615874 (-)
G29551 NA non-coding upstream 507166 18634078 ~ 18634357 (-)
G29612 NA non-coding upstream 757072 18883984 ~ 18887011 (-)
G29279 NA other downstream 43496 18070987 ~ 18072909 (-)
G29263 NA other downstream 166687 17949157 ~ 17949718 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other downstream 587090 17472330 ~ 17529315 (-)
G29158 NA other downstream 836232 17272955 ~ 17280173 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 1980690 16125830 ~ 16135715 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 21316 18148228 ~ 18195628 (-)
LOC113537624 NA other upstream 667113 18794025 ~ 18816812 (-)
trnag-ucc NA other upstream 689347 18816259 ~ 18816330 (-)
trnap-ugg NA other upstream 690215 18817127 ~ 18817198 (-)
glmnb LOC108272089 other upstream 1876447 20003359 ~ 20014094 (-)

Expression


Co-expression Network