si:ch211-157b11.8 (LOC108271679)


Basic Information

Item Value
gene id si:ch211-157b11.8
gene name LOC108271679
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16221165 ~ 16225200 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927104.2
agagacagagggagggataGAGGGTTGGAAGAGGAGATCAAATAAGAAGAGAAAGACAGCAGAAGTTTCAGAAAGATGAGAGCATGGAAGTGAGTGTGTTGGCATGGTAAAGACTTACACACGTAAAGACGCATAGAGAAGGCACAATATTATTAGACCTAATTGGCACAGATTTGAAGGGAAAAAGCCCAAGCACTATTTATTTGAAACACTGGGGTGCTAAGAAGGTCCTAGGTGGAGGAATAAAGGAGACAAGAGTTTGTGCGGAAGATTGGTGAGAGGCAGCGGGAGTCATCTGACAGTTGAGTGCAGTCACTTGTTGGTACACCTCTTGCTTTCCCATGAGTGTCCTTagcagtgtgtgcatgtgtgtgtgcattctacGCTGGCTtttgctgggtgtgtgtgtgatgtgtctgtgtgtagtgtgtcaGAGGGACAGTTTGGTGGCTGGGCCACCCAACCGAAGGTGTGAGGGGGGCTGCAGTGCAACAGCATCTCCCCCAaaaacacacctcacacacaggaAGGACACAGTGCCCAGAAAAACACAGGAGCCTCTCCAAAGAAACACACAGtCATCTTCCATGTCGGAACGTCTGATGCAGCTACAGCGGTGTATGAAACAACATGAACCAGCCTCAGGAAATCGAAGAGATGGATCCGATTCCctggcagccattttggctCTAATGACGGCTGTGCTTACCGAGTGTGACCTGCACTGCCACAGTCAGAGACTTAGAGACATGGCTGGCAGGCTAGagagtgCAGCAGTggggaaaaatggagaaaaagactTGCTGCTATTGATGAAGAGCATCACACAATCTGGCTCACCACCAACACAAAGTGCTTTAACAgTGTCTCCCTCTGCAGGACTTTATCCACAGAATTGCTACGAGATCTTTCAGTTTGGAATAAAAGAGAATGGAATTTATACCATCCAACCAGACCCTCAAAAACCAGCACTGGAGGCTGCGTGTGATATGGAGTCTGCAGGAGGTGGGTGGACAGTGTTTCAGCGTCGATTCGATGGACAAGTGGACTTTAACCGGACCTGGCGGGAGTATCGGGATGGCTTTGGTTCTTCACAAAAGGAGCACTGGTTAGGGAATGGAGTTCTACATGCTCTTACAGCCAGAGGGCAACACACACTCCGCATCACTCTCCAGGACTGGCATCACCAGACCCGACATGCCATCTACAACAACTTTAAAGTGGCAGCAGAAAACCAGAGGTTTCGTCTGACTGCACAAAATTACCAAGGAGATGCCGGTAATGCCCTCAGCTACAGTAAGCACTACAACCATGATGGCAGAGCTTTCAGCACATATGATCACGATCATGATCGCTATGCAGCTGGTAACTGTGCTCAGTACTACGGTGCAGGCTGGTGGTTTGATTCCTGTTTGGCTGCCAATCTGAATGGACGTTACTACCGTGGCCGCTACACTGGCATCACAGATGGCATCTACTGGGGCACCTGGTACATTCTCACTGACTCTCGAAGTGGGGAGAGATACTCGTTTAAAAGTGTGGAGATGAAAACACGACCCAGACAGCCTTAAAATAATCTTCTACATATACCCATACAACATACACAAATTATGCAATGCTACTTTCAGTATTTATACTACACTAAAACTATAGTGCATGGTACCATTTACAATATCATATTTAAAATAgggtcagtgatttttaagtCAGTACACTTTATGTTTAGCAAAGTTATCCTCATATTCTGGCAGCTCAGGTCTCTGTGGCCTCCCAGGGTCTGTAAattggagaagaaaaaaatggatgtgGATAACCAAAATCCAACCAATCAAGTCAAGGAGACTTCTATATTTGCCTGTAAATTACATTACTTGTTAATTCAGCAAGCTTCAGGTATTCTAGCCTAAGTAGCACGTGTGTGTTCTGGGTACGCAGCTTTGGCGAGAACACGGAAGGGAGAGACTATTCCTGCTTGTATTTTAAGTTTCAAAACAGCTAGCTTAAGGTACCTTCTGCTAAAAATCACTGAATGTATATGGCAAGACTTTTTATAGCCAATTGTATGCGAATATGTTTGTGAAAATAAAC

Function

NR:

description
fibroleukin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927104.2 True 2088 mRNA 0.46 6 16221165 16225200

Neighbor

gene id symbol gene type direction distance location
gata2b gata2 coding downstream 11203 16202388 ~ 16209962 (-)
ruvbl1 ruvbl1,LOC107721190,LOC107568195,LOC107667375,LOC107673590 coding downstream 33285 16182517 ~ 16187880 (-)
c2h1orf74 c11h1orf74 coding downstream 46053 16172670 ~ 16175112 (-)
patz1 patz1 coding downstream 101317 16106829 ~ 16119848 (-)
tgfa LOC108271731 coding downstream 137387 16074046 ~ 16083778 (-)
slc26a6l LOC108271864,LOC108440479 coding upstream 46668 16271868 ~ 16281761 (-)
iho1 ccdc36 coding upstream 62971 16288171 ~ 16299906 (-)
rereb LOC108271943,LOC108440553,LOC107721179,LOC107584416 coding upstream 102671 16327871 ~ 16346280 (-)
eno1b eno1b,LOC108271510,LOC108440571,LOC107721178,LOC107568188,LOC107712086 coding upstream 121385 16346585 ~ 16354141 (-)
frs3 frs3,LOC107667350,LOC107584505,LOC107568202,LOC107673473,LOC107712068 coding upstream 147582 16372782 ~ 16386220 (-)
G28331 NA non-coding downstream 24298 16196574 ~ 16196867 (-)
G28325 NA non-coding downstream 39447 16181075 ~ 16181718 (-)
G28278 NA non-coding downstream 98216 16122729 ~ 16122949 (-)
G28256 NA non-coding downstream 175490 16035833 ~ 16045675 (-)
G28376 NA non-coding upstream 33658 16258858 ~ 16259163 (-)
G28375 p4htm non-coding upstream 34236 16259436 ~ 16260312 (-)
G28383 NA non-coding upstream 38414 16263614 ~ 16264242 (-)
G28384 NA non-coding upstream 39724 16264924 ~ 16265160 (-)
G28385 NA non-coding upstream 41356 16266556 ~ 16266755 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 85450 16125830 ~ 16135715 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 725956 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 760164 15456635 ~ 15461001 (-)
G27843 NA other downstream 922146 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1345175 14872948 ~ 14875990 (-)
G29158 NA other upstream 1047755 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1247130 17472330 ~ 17529315 (-)
G29263 NA other upstream 1723957 17949157 ~ 17949718 (-)
G29279 NA other upstream 1845787 18070987 ~ 18072909 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 1923028 18148228 ~ 18195628 (-)

Expression


Co-expression Network