atg4c (atg4c)


Basic Information

Item Value
gene id atg4c
gene name atg4c
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21957535 ~ 21968209 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927983.2
GTCAAACTCAAAGTCTCGCGAGATTTCACAGGACGCCGAGGTCATTTcctcaaaatgtaaacaaaagtgATATGCAGGCGATGTGAATAGATAAATATCTCAAAGCATGTGAACAGGCATTTGGCCGTGTGTGCGGTGATGGGTTCCGATCTGTGCCTGATGAAATGGAGATTAAAGGGAACGACGAGGTGGAGAAAATAAAGTCTAAGTTCATGTCAGCATGGAACAATGTCAAATACAGTTGGATGCTGAAAACAAAGACTTCCTTTAGTCGCAATTCTGCAGTCTTCCTGCTGGGGAAATGTTATCACTTCAAGGAAGATGATGACGACAGTCCTACAGAAAGCTGCAGCACAGACTTATTTGACAATAATGCTGTCATGGGCAATGTGGACGGATTTCGGAGGGATTTTGCTTCCCGGATCTGGCTCACTTATCGGGATGATTTCGCCACGCTGCCGGAATCAACCATCACCACAGACTGTGGTTGGGGCTGCACTCTCAGAGCCGGGCAGATGATGCTGGCCCAGGCACTTTCACTGCATTTTTTGGGTAGAGACTGGACCTGGCCTGATGCACTGACCTTGGAGCCTCTGGACACTGAGACATGGACGAGCAGCGCAGCACGAAAGCTGGTCGCCTCATTAGAAGCTTCATTCCAGGGAGACAGGCCGAGAGTCCCAGAGCCTGTATGCCAGCCCCAGTGTGGGGCAGAAGAGGCCGACGCCCACCTGAAAGAGGTGTACCACCGCACTATTGTGTCCTGGTTTGGAGACACTCTCTCTGCCCAGCTCGGGGTCCACAGGCTGGTCCATCTGGGTATGACCTCAGGGAAAAGAGCAGGAGATTGGTATGGCCCTGGAATAGTGGCACACATTCTCAGgaaaGCTGTGGAAGAGGCTACAGATCCAAAACTGCGAGGCGTGACTGTTTATGTGGCACAAGACTGCACAGTGTACAGCGCTGATGTTATTGAGAGTCACTCAGCGCGGGTGGACACACACAGGGCCCCTGAAGGAGCGGTCACTGACAACAGAGCCGTCATCATTCTCATCCCTGTCAGACTGGGGGGAGAGAAGATTAACCCTGAATACTTCAACTTTGTCAAGGCCATCCTGAGCTTGGAATATTGTATCGGGATCATTGGAGGGAAACCCAAACAGGCCTACTACTTCGTTGGATTTCAAGATGACAGCATGATTTACATGGACCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACAAGCAATTTTCCTCTGCAGtcataTCATTGTCCATCACCAAAGAAGATGCCTTTCATTAAAATGGACCCAAGCTGCACTATTGGGTTCTACTCCAAAAGTGTTCAAGATTATGAAAAAATTAGCACTGAGTTGTCAAAGGTGCTGCAGCCGTCATCGAAAGAGAAGTACCCGGCATTTACCTTTATGAGAGGACACGGGAAAGATTACGAACTGTCTATTCCTGTGGAGAAAAGAGAGTGGCCCTTCATCAAAGACACACGCAATCCCGGGGCCACCGCAGGGGACTTTGTGCTGCTGTAAATGAGGGCTTGGAATTCCTGAGTGTTGTTATATGTGTGATCTTTCTGCATTATGCTGGTTTTAATGGTTCCATCATACCAAGCGTGTACAGAGAAGCAGTCCTGCTTCCGGGGTTTGTCTATTTGAAGAGCAGAAAGCAAAACCATCCATCAACAACTCTCTATATCCAGCACCTCAACTTAACACTGTAAACAAACTCAATATATCTCTCACACATTTCTGGTCAGAGGATTTTTTTAGGgtgttatgtatatatgttgCCATTCATCCAGCACTCACTGTAATACATTGAATTTCTTATTCAAAAATGGTACAGTCTATGGTATGTTACTTCATACTTTGTCTCATAGTTATTAAACAATTAACTCGATACTTTTTATCTAGAAGAGAAGACCCACACTCCAGGTTAAGCTGAGAGATGCAACACTGTGCTAAAACTGGACAGAAAACTGAGCTTATAAACTCTACATGGCCTTCAAAAACATGCTAGTGCCTCCTGGAAGCATGAAGTTTAGAAGGCTAATTCAAAAGCCTGCAGCCTCTGAGTGCTTCTGAAATGTCTTGTACACACTGAGATATTGAAAATGTAGCAttcttactcacacacacacacacacaaggtgtttctggcttttttttttcctgatttaaaTGGTCTCAGCATTTATGACTGGATAACAGTGCTGCTAAAAATCATGATGGTGTTCAGAAGTAAGCCTACTCCTGATCCGTACCATTGAAGAAAGACTAAATAATATtgagaaagtgatttttttgttgttgttgcttaaAGCCATTTGAATTAATCTGCAGTATAAAGTTGTCATGTCCATTTCAAAAAGGTGTTCTGCATAAGAAGTAAAATTGTTAAGTTGTCTATCTTGTTGTTGTATTTTGGTAAAGGAGAATGGTGTAAGCCAAAGTGTTTCATACTACACAAAGCTGTaactctttttttgttgttcatgtAACCAGGTTGTGTAAAGAGATTTGTTGAATGAAGgctgaagaacatgaaacaCATGCTTGTTTTCCCAAAATCAATTTGCACAATGGTCATTAAtagtaatttacagtaatttacaatAAAGCTGAAAAGACTGactata

Function

symbol description
atg4c Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Orthologous to human ATG4C (autophagy related 4C cysteine peptidase).

NR:

description
cysteine protease ATG4C

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927983.2 True 2656 mRNA 0.44 11 21957535 21968209

Neighbor

gene id symbol gene type direction distance location
foxd3 foxd3,foxd1 coding downstream 132061 21822742 ~ 21825474 (-)
alg6 alg6,LOC107704515 coding downstream 141856 21796560 ~ 21815679 (-)
pgm1 pgm1,LOC107591179,LOC107704513,LOC107731639,LOC107739071,LOC107692428 coding downstream 179585 21764915 ~ 21777950 (-)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177 coding downstream 201448 21634567 ~ 21756087 (-)
cachd1 cachd1,LOC107692379,LOC107556548 coding downstream 378456 21538999 ~ 21579079 (-)
angptl3 angptl3 coding upstream 25486 21993695 ~ 21996721 (-)
usp1 usp1 coding upstream 67004 22035213 ~ 22046458 (-)
LOC113538524 NA coding upstream 175994 22144203 ~ 22150238 (-)
LOC117599932 NA coding upstream 189499 22157708 ~ 22199634 (-)
mafaa mafa,mafaa,LOC107556987,LOC107591187 coding upstream 350926 22319135 ~ 22322050 (-)
G31492 NA non-coding downstream 341860 21615321 ~ 21615675 (-)
G31486 NA non-coding downstream 344713 21569856 ~ 21612822 (-)
G31491 NA non-coding downstream 348368 21607396 ~ 21609167 (-)
G31489 NA non-coding downstream 353672 21602544 ~ 21603863 (-)
G31481 NA non-coding downstream 425076 21532248 ~ 21532459 (-)
G31681 NA non-coding upstream 135989 22104198 ~ 22104411 (-)
LOC117596032 NA non-coding upstream 162216 22130425 ~ 22132698 (-)
LOC117599244 NA non-coding upstream 205142 22173351 ~ 22175740 (-)
LOC117599242 NA non-coding upstream 228385 22196594 ~ 22197668 (-)
G31742 NA non-coding upstream 256176 22224385 ~ 22226660 (-)
raver2 raver2 other downstream 426107 21449546 ~ 21531428 (-)
lepr lepr other downstream 639712 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 1528210 20359722 ~ 20429325 (-)
glmnb LOC108272089 other downstream 1943441 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 3140337 18817127 ~ 18817198 (-)
ccdc17 ccdc17 other upstream 604223 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 614094 22582303 ~ 22593861 (-)
dmrt2b LOC108271504 other upstream 1254084 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 1647245 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 3711881 25680090 ~ 25738817 (-)

Expression


Co-expression Network