LOC113535748 (rassf1)


Basic Information

Item Value
gene id LOC113535748
gene name rassf1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15010827 ~ 15024533 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929263.2
GCGACTGAATACCCGCACACACTCTCAGGAAGTAGCTCACGAGTTCATTCCGCTACTGCGTTACATTCTGCACTACAGCGAACAAgggactttttttcttttttctttttttttctttttttgcagatgtGGCGGCAATTCACACAGCACTGGATTAAACAAAACGCAGCTTCAGAGAACTGGAGACTATGAGCTGGAAACTCGTCAAGAAGTCTGGGCGTGTTCTCTCGCGACTTTCCTGCAGCAGTTAAAGTGATGACAGAGCTGTTCTCTTCCCTGCACACTTCTTTATCTCAGAGCGTTGTGAGACGGGTGTCGTGATGTACAGCCTGCCCTGTTTATTAGCCTGTGGGGTTTGGAGAACGGATGAACTCGGAGCCCTGTTTCCTCAGACCGAGCAGCTCGTGTGAAAGGATCTTTTCAGTTTAAATGCAGTCATCATTCTTTTCGCCTAGAAGTACAAAGTCAGTGGAAAAACCCAAACCCTCAGAACCTGACAGACCTTCACTGCCTCTTGCTGTGACACAATGAAAGGCCTCAGACGTTTCATTAAGACATTTGTCTTAAATTGGACTGGATATAAATTGCAGTCAATTGACTCCAAATCAGACAGCATACTATGACCTAAAGACCCAGAAGACCGTTTATTTCAACACAGGTGTATCATAAAGCTGATGAACATCATGTCATTGGAGGAACTGATTGAGCTTGAGGAGCTTGAGGAGCGCATTGAGCTTGCTGATTCTTTACCACCTCGAACTCCTCGCCTAGAGAGGGTCAATGCCTTGAGAATAAGCCCAGGAAAATTCCCAGAGCTCTGGAACCGTGTGCGGATTATCAGGCTCCTGGGAGACACCATGAAGGACCCACAGCTGGTTGAGGAGACAGGAGAAGGCCACGACTTCCATCCCTGTAGCCATGCTCAACCCACCTGGTGCGATCTGTGTGGAGACTTCATCTGGGGGGTGTACAAACAAAGCCTGCGCTGTGCCAACTGTAGGTTCACCTGCCATTACCGCTGTAGAGCTCTCATTAAACTGAACTGTAATCAGGGTGATGCCTCTACTACCGATCAGTCCAGTGATGTCCAGGACAGCATTGAAACTGACACTAACGTgGATGAGGTGACTGAGAGCAAGAAACAAGAGCTGTCCCATTCAGAGATTCAGCAGAAGATAAAGGAGTATAATGCTCAGATAAACAGCAACCTCTTCATGTCTTTGAACAAAGATGGCACCTACAACGGTTTCATCAAAGTTCATCTGAAGCTGGTACGGCCTGTGTCTGTTCCTCCTCCACGGAAGGGTGCTACGTCTCAGGAGCCAGCCAATGGGAAGAGAGGGGGAGCAGTAAAAAGGCGCACGTCCTTCTACCTCCCAAAGGACACTGCCAAACATCTGCACATCAGCTCTCGAACTCGTGCACAGGAAGTGATTCAGGCCCTTCTCAAGAAATTCACAGTGATCGACAATCCTGCGAAGTTTGCACTGTTTGAGCGCACTGAGCGCCATGACCAAGtgtaCCTACGGAAGCTGCCTGATGATGAGTGTCCACTGTTCCTGCGTTTATGTGCTGGGCCGAATGAGAAGGTGCTGAGTCTGGTACTAAAGGAGAATGAGACGGGAGAGGTCAATTGGGATGCATTTTCTTTGCCGGAGCTGCACAATTTCCTGCGCATTCTGAAGCGAGAGGAAGAGGAGCATGTAAAGCAGATCATGCAGCGTTATGCAGTGGCTCGTGATCGCATTCAACAAGCTCTGGTCAGCACCAACCCTGGCTGATCACTTCACAGAGCCTGTCATACTGACGAGTGGTCACAAGGGGGCCTCAGTCTATGAGGGAAGTCGACCGATCTACCGATCCATATGGACTAGCATCAGTGCGAttagtgtgagagagagagagagagtgcgaaCGAGTGTGGAAATGCAAGTGCGCAACCAGATGTGCGTGCGTGGAGAGAATGAGTCGTGACTGAGAGCGAGCGAAAGCATACTGGGGAATGGACGAGTGAAAATAGAACACCTTGTCGTGAATGGTGTGTGATTTGTTCGAGTGAGTGTAGAGAGTCCTCAAGATAGAACATCGTGTTTCTATGGAGACTACACAGGACTCTCCTGACTTCACTGCTGGTGaagttttaaatttacttttcttttcttccttctgtaGGCTATGAGACTatggagttttctttttttcttatccaTGTAATTGAACAACCTAGTTGTAGTAAATCCATGTGACTTGACTTGCTGTGcaatgttgaaaatgtctcACAACTCATCCATTTGACTTCTTTAGTACTACTGAGTGGTGAGGAATACCGGGGAATTCCCAATTATTCAGTTGACCTGATAAAGCCCCTTAGATGAGTGGTGAAATATCTTCAGCATTAAAGCAACAAGACCAGTTGCCTTAACTTACGACTCCTAGACTGTTTTTGCTTGGATGACTTGCATTCATTTCCAGACTTCTCTTGGAACACTGTGCTCAAataaattgggggaaaaaaggttcttGACCatgttttgattattattgCCATTCTTGTTGCCTACTTAATAAATCTGttctgtaattttatatatccTTTATATGTATGTTCTGTCAGTCACCtttttttgttagcaaaatATTCAAGCTTGACCTTGTGCAGTCACTTCAGTTTCTggaaactttctttttttccccccacaataAATGATTTCCTTTTTA
>XM_026929270.2
TCGTCGAGTTGGAACTTCCTGTGTAGAGCCAATCACGGCGCGCTTTGGCTTGGGTTGTATATTTTCCAATTTTAACGTCCAGGGCGGAGCGTTTCCGGTTTAAGTCCAGAGCAACGTGGGCTAATACTTCATCAACGCCGCATACATCGAGACAGTTAGCAGATTTTCGAAGCAAGATCTACAGTTTTTAGTATTTATACTGTTAATCTGGTTAGAAAACGACTCGGTTTAAGTAGAAGTCATTCCTAAGTGAATAACGGTTTATTAGCAACTTTTAACAACTCGCAAACTTTTTTTTCGCGATGAGTGGAGTTAGTTGTAGCGACCAGACTCCGTCTTTTGAGAAGACCTGGGGCAGCTCGGCGAGCAGCGGGTACTGCAGTGAGGAGGACTCCAACTCCCACTCAGACTCCGACTCCGAGCTCGAGCAGTATTTCACCGCGCGCACTTCCTTCTTTCCCAAAGCCCAGAAAGACAAGGATGAGGTGACTGAGAGCAAGAAACAAGAGCTGTCCCATTCAGAGATTCAGCAGAAGATAAAGGAGTATAATGCTCAGATAAACAGCAACCTCTTCATGTCTTTGAACAAAGATGGCACCTACAACGGTTTCATCAAAGTTCATCTGAAGCTGGTACGGCCTGTGTCTGTTCCTCCTCCACGGAAGGGTGCTACGTCTCAGGAGCCAGCCAATGGGAAGAGAGGGGGAGCAGTAAAAAGGCGCACGTCCTTCTACCTCCCAAAGGACACTGCCAAACATCTGCACATCAGCTCTCGAACTCGTGCACAGGAAGTGATTCAGGCCCTTCTCAAGAAATTCACAGTGATCGACAATCCTGCGAAGTTTGCACTGTTTGAGCGCACTGAGCGCCATGACCAAGtgtaCCTACGGAAGCTGCCTGATGATGAGTGTCCACTGTTCCTGCGTTTATGTGCTGGGCCGAATGAGAAGGTGCTGAGTCTGGTACTAAAGGAGAATGAGACGGGAGAGGTCAATTGGGATGCATTTTCTTTGCCGGAGCTGCACAATTTCCTGCGCATTCTGAAGCGAGAGGAAGAGGAGCATGTAAAGCAGATCATGCAGCGTTATGCAGTGGCTCGTGATCGCATTCAACAAGCTCTGGTCAGCACCAACCCTGGCTGATCACTTCACAGAGCCTGTCATACTGACGAGTGGTCACAAGGGGGCCTCAGTCTATGAGGGAAGTCGACCGATCTACCGATCCATATGGACTAGCATCAGTGCGAttagtgtgagagagagagagagagtgcgaaCGAGTGTGGAAATGCAAGTGCGCAACCAGATGTGCGTGCGTGGAGAGAATGAGTCGTGACTGAGAGCGAGCGAAAGCATACTGGGGAATGGACGAGTGAAAATAGAACACCTTGTCGTGAATGGTGTGTGATTTGTTCGAGTGAGTGTAGAGAGTCCTCAAGATAGAACATCGTGTTTCTATGGAGACTACACAGGACTCTCCTGACTTCACTGCTGGTGaagttttaaatttacttttcttttcttccttctgtaGGCTATGAGACTatggagttttctttttttcttatccaTGTAATTGAACAACCTAGTTGTAGTAAATCCATGTGACTTGACTTGCTGTGcaatgttgaaaatgtctcACAACTCATCCATTTGACTTCTTTAGTACTACTGAGTGGTGAGGAATACCGGGGAATTCCCAATTATTCAGTTGACCTGATAAAGCCCCTTAGATGAGTGGTGAAATATCTTCAGCATTAAAGCAACAAGACCAGTTGCCTTAACTTACGACTCCTAGACTGTTTTTGCTTGGATGACTTGCATTCATTTCCAGACTTCTCTTGGAACACTGTGCTCAAataaattgggggaaaaaaggttcttGACCatgttttgattattattgCCATTCTTGTTGCCTACTTAATAAATCTGttctgtaattttatatatccTTTATATGTATGTTCTGTCAGTCACCtttttttgttagcaaaatATTCAAGCTTGACCTTGTGCAGTCACTTCAGTTTCTggaaactttctttttttccccccacaataAATGATTTCCTTTTTA

Function

symbol description
rassf1 Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within intracellular signal transduction and regulation of microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule. Predicted to be active in microtubule cytoskeleton and nucleus. Is expressed in several structures, including immature eye; intermediate cell mass of mesoderm; nervous system; pharyngeal arch; and ventral mesoderm. Human ortholog(s) of this gene implicated in breast cancer; reproductive organ cancer (multiple); transitional cell carcinoma; and urinary system cancer (multiple). Orthologous to human RASSF1 (Ras association domain family member 1).

NR:

description
PREDICTED: ras association domain-containing protein 1 isoform X1

GO: NA

KEGG:

id description
K09850 RASSF1; Ras association domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929263.2 True 2718 mRNA 0.46 7 15010827 15024533
XM_026929270.2 False 2079 mRNA 0.45 5 15010827 15016270

Neighbor

gene id symbol gene type direction distance location
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 1644 14887465 ~ 15009183 (-)
tgm5l LOC108272022 coding downstream 141124 14862967 ~ 14869703 (-)
vstm2l LOC108271577 coding downstream 196380 14797637 ~ 14814447 (-)
dlgap4b LOC108272050,LOC108427631 coding downstream 308792 14600663 ~ 14702035 (-)
LOC113529797 LOC108271527,LOC107705866 coding downstream 412281 14591405 ~ 14598546 (-)
zmynd10 zmynd10 coding upstream 594 15025127 ~ 15032562 (-)
nprl2 nprl2 coding upstream 8913 15033446 ~ 15039603 (-)
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding upstream 252372 15276905 ~ 15278713 (-)
rad18 rad18 coding upstream 481111 15505644 ~ 15568428 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 593818 15618351 ~ 15727114 (-)
G27600 NA non-coding downstream 166 15010325 ~ 15010661 (-)
G27502 NA non-coding downstream 126340 14884255 ~ 14884487 (-)
G27484 NA non-coding downstream 150581 14860005 ~ 14860246 (-)
G27448 NA non-coding downstream 220186 14790431 ~ 14790641 (-)
G27303 NA non-coding downstream 517988 14492637 ~ 14492839 (-)
G27652 NA non-coding upstream 40352 15064885 ~ 15065211 (-)
G27699 NA non-coding upstream 105470 15130003 ~ 15130260 (-)
G27705 NA non-coding upstream 120172 15144705 ~ 15146155 (-)
G27706 NA non-coding upstream 126279 15150812 ~ 15151049 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding upstream 219782 15244315 ~ 15246353 (-)
pxmp4 pxmp4,LOC103464829 other downstream 134837 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 952382 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 1103638 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1363650 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 1376083 13632262 ~ 13634744 (-)
G27843 NA other upstream 272776 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 432102 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 437417 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 1101297 16125830 ~ 16135715 (-)
G29158 NA other upstream 2248422 17272955 ~ 17280173 (-)

Expression


Co-expression Network