cish (LOC108272001)


Basic Information

Item Value
gene id cish
gene name LOC108272001
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15752213 ~ 15756341 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929869.2
AACGCTCGGTTTTTCCTGGAAAGTTCTTAGAATGGTTTTACGAGACGCTCCTAGGAAGGGCTTGTCGCTATGCAGTGTTTATGAGGggggagaaaatggaaacaCGCACTACATTTTGCAATAAACCTATTTTATGACTCAACACATTCCACATTGCAAATGAAGCTGTTATGAAACGTGGTAAAACTGGTGTGATCCATGTGTTTGCTAAAACTGGCTAAAAATGGGAGTTGTACCGGGAATGATTGGGGGCGACTCTGAGAGAAAGTCACTGATGGCGTCAGAGGCGCTGAGACGCGCGCGCTGATTCGGAGAAAAGTCGTTCCTGGAACTCAGGCGGAATCAGCACACCAAAGCCCACAGTTGTTTCGGCTACACTTTTAGGCTGGTAACCGGCTGAAACACTATTCATTAGCGCAAATCGTACCGGATGCTGTTTCAGCTACATCTTTGCTCCTGGGTTATTCATTTCTAACGTCGGCGGATTTCACAAAGAGAGCTGCGATACTGTTAGAGAGGCTCGGGAGAAGGTTTTTAGATCGCGGCGACGCACCGAGTCCCAACAAACCCCAGCTCAAGCTCAAACCCAAGCTCAAACCCAAGCTCAGACCCAAGCTCAGGCTCAGGCTCAGGCTCAGGAGCGGCTGAGAAACTTTCAGAGGCGGTTGAGGAACCTGACTGAAGCCTTCACTCATACGATGATCCTCTGCGTTCAAGGTCCCAGGGCTCTGTTAGGAGACTCGCAGTCTCAGGTGGTTCCTCTCGGGGTTTCAGACCTCTCTTCCTCATCAGCACGTTGTCTTCACAGCACCCCCAAGTTCTGGGACCCCAGCAAAGACTGGTGCACCATCACCAGCAACTTCTGTTACCTTGATGCATCAGGGTGGTACTGGGGCACCATCACAGCCAGTGAGGCCCATTCACTCCTTGAGGCGGCCCCAGAGGGCACGTTTCTCATTCGGGACAGCAGTCACCCTCTCTACATGCTGACGCTATCAGTCAAAACGGGACGCGGCCCCACTAATGTGCGCATTGAGTACAGTCACGGGCGCTTCCAGCTTGACTCGAGTTCACCGGCCCGAGCACGTCTGCTCTCTTTCCCTGACGTGCTGAGTCTGGTGCAGCACTATGCTACCTCAGCGAGGGGACGCGACACGGCTCAGGACGAGGAGTGTGATCCTGTAACTCCCCCGGTACCTAAGGAGTGTGCTGTGCTGCTCAAGCTGAAACGTCCACTCCGCCAGCCTCAGGCTTTTCCATCCCTACAGCATCTTGCACGCTTGGCTATTAATCAGTACACAGCCTGCCCAGCAAAGCTGCCCTTACCAAAGCCATTACTGCAGTACCTACAGAAGTACCCTTTCCAGCTCTGACATCACCATGGAAACACCAACTTGAACATAAAAGAGAGGAAGCTGATGTCATTAATGAAAATGATGCAGGTGAAAGCTCATTTCCAGGGGAATGGGACTTTGGCTCACTAACCAATGGTGGCTATATTTAAAGCTCTAGAACactttctcttttgtttgttaTGACTAATTTATGCTTTGGactaccttttttttctcctgtgggATAAATTAGATTTCCTGTTCCCAAATATAGACTAAAGTGGAAATTCACTGGAACCTGAAAGAATATCAAATGACAAATAGAAAGACGTTTGCAGCTAATCGATGTCAGCATTCAAATGATGTTTGTAGGATATGGTGTAACTAGTTTTATTACCCCACAACTTTGGatgaacctttaaaaaaagacttgGAGACTACTGTGGGTTTGATTCTCCCAAAACATAGCCTGTCCCTAAGGTCATATCACTTATTTTCAGTGattgtttgattaaaaaaaaaatgaaagctacACAATTTTCCCCATGGCTTGAGCTACATGGCTAATGAAGCTAAGTTAAAGACGCATATAGAGCTGTTTTAGCATAGTTAAAACTCCATGcttaaatcatcacacacttgcctAAAACTATGGTGTTATCTGAAGTAGAATTGTTATTGTGGTTTCGGACAGTGTATAACACTGTTATTTGCtatttttcttgttaaaaaaaggtcaaaaatgacatttttctttcctcagAAACTATCACTCTGCACTATCAGCAAACTCAGACTAGCtactttagctagctacagAGCGATCCATAGACTGGGATATAGCcaaaataaacaatgtttaCTTCAGGTTCTTTGCTCAGAGGtagattttatagaaaaatgataGTACAGCAGATTTAGGTGTGTTTTTATAATGAtactttttctgatttttcacagttttctatgatttattttctttttgcatcctagaacacaaacacagctattGTAGCTAGTTAACTTAGCCCAGCTAGTTATTGTTTACATTAGCAATATGCTCAGAGTATAGCTATCCGACAAAGTTTGAAAACTAATATTAAtcgtttttcatttttagcttttaatttttttaaacatcaagtTATGAAACAAATTGCTATTTTGAATAGGAATTGTTAATGGTATTACTTAGTCAGATGATATCCTTTATGACAAGCGTGTGATTATTTTGGAGTTCTGTTTGCACAGTGCTAAACTAGCAACTAGAAGCCtcccttacttgttagctacaaaACTCAAGGAGCAAACACCAGACTCCAAACATAATTTGGCCGACTAACAAGAATTATGGTTAGggaaaatttgtgtaaatttcatttttggactGTTCTTAAATTCTTAATTTCTTACAGAGACAAACAAGGGTGAGGGGCTGCCAGTGAGCACACCAACATTAAGTCAAAGCCCTGTGTTGTCTCTCTTGCtttcctttttactttttctacGCAAAATTCGTTCTGGTACATATTACTATATAATCAGTccagaataatttattttttctgtcccCACAATGTGggtgtttgtatatatttatggaCAAAGatcctttttattttgtaataaaagaaaaatactgaacCGTT

Function

NR:

description
cytokine-inducible SH2-containing protein

GO: NA

KEGG:

id description
K04701 CISH; cytokine inducible SH2-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929869.2 True 2983 mRNA 0.43 3 15752213 15756341

Neighbor

gene id symbol gene type direction distance location
srgap3 srgap3,LOC107750258,LOC107657972 coding downstream 25099 15618351 ~ 15727114 (-)
rad18 rad18 coding downstream 183785 15505644 ~ 15568428 (-)
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding downstream 473500 15276905 ~ 15278713 (-)
nprl2 nprl2 coding downstream 712610 15033446 ~ 15039603 (-)
zmynd10 zmynd10 coding downstream 719651 15025127 ~ 15032562 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding upstream 6195 15762536 ~ 15775878 (-)
wdr82 wdr82,swd2,LOC106565976 coding upstream 21849 15778190 ~ 15784244 (-)
cplane2 rsg1,LOC107673497,LOC107750284,LOC107712114 coding upstream 35227 15791568 ~ 15794776 (-)
cadpsb cadpsb,LOC108271493,LOC108436257,LOC107673496 coding upstream 39460 15795801 ~ 15874718 (-)
LOC113536620 slc6a13l,LOC108271591,LOC108436256,LOC107673491,LOC107567081,LOC107712076,LOC107658051 coding upstream 142950 15899291 ~ 15910072 (-)
G28191 NA non-coding downstream 26757 15720767 ~ 15725456 (-)
G28182 NA non-coding downstream 70169 15681570 ~ 15682044 (-)
G28173 NA non-coding downstream 135465 15615025 ~ 15616748 (-)
G27953 NA non-coding downstream 248170 15503832 ~ 15504043 (-)
G27935 NA non-coding downstream 274205 15477790 ~ 15478008 (-)
G28207 NA non-coding upstream 30512 15786853 ~ 15788153 (-)
G28232 NA non-coding upstream 172700 15929041 ~ 15933858 (-)
G28256 NA non-coding upstream 279492 16035833 ~ 16045675 (-)
G28258 NA non-coding upstream 281642 16037983 ~ 16039793 (-)
G28278 NA non-coding upstream 366388 16122729 ~ 16122949 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 257004 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 291212 15456635 ~ 15461001 (-)
G27843 NA other downstream 453194 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 876223 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1693768 14050401 ~ 14058445 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 369489 16125830 ~ 16135715 (-)
G29158 NA other upstream 1516614 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1715989 17472330 ~ 17529315 (-)
G29263 NA other upstream 2192816 17949157 ~ 17949718 (-)
G29279 NA other upstream 2314646 18070987 ~ 18072909 (-)

Expression


Co-expression Network