LOC113536636 (LOC108271735,LOC108413697,LOC105889205)


Basic Information

Item Value
gene id LOC113536636
gene name LOC108271735,LOC108413697,LOC105889205
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15960164 ~ 15975984 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930718.2
CAGTTAATGTTTTCATACCAAGGAAGCTAAGCATTGCCTTAGCAATAACTGACCCTAGTTTTGGCATTTAATTTCAGGGAAACCTGTCCAACAGCGGCTTCTTTAACTTCTGAACGCCTCCATCAGTGATATGGTGATACATAATGATCCAGAAGCTGACTTGTCTTATCCAGAGTCAAACTCAAACTCAGGAAGAATTAACACAAAGGCCAAAACTAAGGAGAGAGGCCAGTGGTCAAGTAAAGCTGAATTTCTCCTGGCTGTTGCTGGACAAATCATTGGCCTAGGAAATGTGTGGAGGTTTCCTTACTTGTGCTACAAGAATGGAGGTGGTGTGTTTTTAATACCATATTTGGTCTTCTTGTTTGCTTGTGGCATTCCACTGTTCCTCCTGGAGATATCATTGGGTCAGTACACCAGTCAGGGCAGCATCACATGCTGGAGGAAAATCTGCCCTTTGTTTCAAGGATTAGGCTATGGAACTGTAGTGGTCCTGCTGTATTCCAGCATCTACTACCTTATCATTATGGCCTGGGCATTCTTCtatctcttttcctcttttagtACTGAGCTACCATGGGCTACCTGCAGCAATGCCTGGAACACTGaaatgtgtgttGACTTTGATAAAAAGGACAATTTTAGCAACTTCAGTATATCAGAGAATGCAACTTCACCTGTTAAAGAGTTCTGGGAGAGGAGAGTGCTAAATCTCACAGGCAGTGTGTATGAGCTGGGCAATGTGAGGTGGGAGCTGGCTCTATGTCTCCTTTTAGCTTGGATCATTTGCTATTTCTGTGTGTGGAAGGGAGTGAAGTCTACAGGCAAGgtgGTCTATTTCACTGCTACATTTCCTTATGTGatgttggtggtgctgttgttgcGTGGACTCACATTGCCTGGGGCCACTGATGGCATCAGATTTTACCTCTACCCAGATCCTACACGTCTCACGGACCCACAGGTGTGGATGGATGCTGGAACTCAAATCTTTTACTCCTATGCTCTCTGCATGGGCTGTCTCGCTGCTCTTGGAAGCTACAACAAGTACAACAACAACTGCTACAAGGACTGTATTTATCTATGCCTGTTGAACAGTGGGACCAGTTTTGTGTCTGGATTTGCCATCTTCTCTGTGCTGGGCTTCATGGCTTATGAGCAGGAGACAGACATCTCAAAAGTGGCAGAGTCAGGTCCAGGGTTGGCCTTCATTGCATACCCCAGGGCAGTTGCGATGATGCCTGTTCCACAACTATGGGccatttgttttttcatcatgATAGTTTTGCTGGGCTTGGACACGGAGTTTGTGGGGTTGGAGACATTAATGACAGCTATAACTGACCTGTACCCTTCTTACTTACTCCGTGGATATCGGCGTGAACTCACCCTGCTCTTCATCTGTGTTGGGAGTTTCCTCATTGGCCTGGTTATGGTAACAGAGGGCGGCTTGTATATTTTCCAGTTGTTTGATTACTATTGCTGCAGTGGGATGACACTTCTGTTATTCGCCATTCTGCAGTCAGTGTGTATAGGGTGGGTGTATGGGGCTAATCGCCTGTATGATAATATTGAGGACATGATTGGCTATCGACCattgttcttaataaagtaCTCTTGGAAATACATCACTCCTCTAGTCTGCACTGGTACATTTGTCTTCTCTCTGGTCAAATTCAGTCCTCTGAAGTTCAACAATATAATTGAATACCCCTGGTGGGGCTATGCTATTGGCTGGTGGTTCACACTCTCTTCAACTCTGTTGGTTCCTCTTTGGATGATCTATGCTCTCCTCACATCCAGTGGCTCATTCAGACAGAGATTACATGTTCTCTGCACCCCAAAAAGAAACCTTCCTCTGAActcaaggaaaagaaaaaaatgtccaaCTTTTATTGGCTTTACAGCTGTACCACAAGGGCAAGAACATCCTTGAAGCAAAAGCATTCTGTTACCTTTGGGGTACTTGTCTACTGTGGGttttttgtctatttgtctTAGTGTACATCAGCTCCTGAAAATAACTTTTACACACTGTgatttgttaatcagtttcatgCAAAATTTTTCATCTACAGTATTCGAGTATTTCATGTTACTCTGTGTACAGCAAGATCAGATAGCCTTTTGCATGgaattaattatgttttttgttcttgctaaatgaacatttattacttATTGCAAAAGACTGATGTATGCAATAAAGGGCAATACtccagggtgtcccaaaagtctccatacataggggacaatgtatgc

Function

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 2-like isoform X1

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930718.2 True 2262 mRNA 0.43 15 15960164 15975984

Neighbor

gene id symbol gene type direction distance location
LOC113536633 LOC108271735,LOC108413697 coding downstream 8677 15935781 ~ 15951487 (-)
LOC113536620 slc6a13l,LOC108271591,LOC108436256,LOC107673491,LOC107567081,LOC107712076,LOC107658051 coding downstream 50092 15899291 ~ 15910072 (-)
cadpsb cadpsb,LOC108271493,LOC108436257,LOC107673496 coding downstream 85446 15795801 ~ 15874718 (-)
cplane2 rsg1,LOC107673497,LOC107750284,LOC107712114 coding downstream 165388 15791568 ~ 15794776 (-)
wdr82 wdr82,swd2,LOC106565976 coding downstream 175920 15778190 ~ 15784244 (-)
fkbp5 fkbp5,LOC108271732,LOC108413698,LOC107712109,LOC107673486,LOC107667344 coding upstream 36014 16011998 ~ 16024469 (-)
entpd8 entpd8 coding upstream 72009 16047993 ~ 16056687 (-)
tgfa LOC108271731 coding upstream 98062 16074046 ~ 16083778 (-)
patz1 patz1 coding upstream 130845 16106829 ~ 16119848 (-)
c2h1orf74 c11h1orf74 coding upstream 196686 16172670 ~ 16175112 (-)
G28232 NA non-coding downstream 26306 15929041 ~ 15933858 (-)
G28207 NA non-coding downstream 172011 15786853 ~ 15788153 (-)
G28191 NA non-coding downstream 234708 15720767 ~ 15725456 (-)
G28182 NA non-coding downstream 278120 15681570 ~ 15682044 (-)
G28173 NA non-coding downstream 343416 15615025 ~ 15616748 (-)
G28256 NA non-coding upstream 59849 16035833 ~ 16045675 (-)
G28258 NA non-coding upstream 61999 16037983 ~ 16039793 (-)
G28278 NA non-coding upstream 146745 16122729 ~ 16122949 (-)
G28325 NA non-coding upstream 205091 16181075 ~ 16181718 (-)
G28331 NA non-coding upstream 220590 16196574 ~ 16196867 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 464955 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 499163 15456635 ~ 15461001 (-)
G27843 NA other downstream 661145 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1084174 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1901719 14050401 ~ 14058445 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 149846 16125830 ~ 16135715 (-)
G29158 NA other upstream 1296971 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1496346 17472330 ~ 17529315 (-)
G29263 NA other upstream 1973173 17949157 ~ 17949718 (-)
G29279 NA other upstream 2095003 18070987 ~ 18072909 (-)

Expression


Co-expression Network