LOC113538330 (pcdh9,LOC107582331)


Basic Information

Item Value
gene id LOC113538330
gene name pcdh9,LOC107582331
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 24968550 ~ 25170260 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933302.2
CTGTGTCTGTCTCCCTGCACTCACAGAAGCGCACAGCCGCACGCGCTGCCGCGGACGGCAATCCTGGATtagctttatttctttattatttttttcacgctaaaaaaaaaataataataaagtcaatAAGAAACCTGGGAGCTAATGCATTTATGCATCGTTGAACTTGACTCTCTCGTGCTGGGATAAAATATGGGATGTGTCTGCGCGTCTGTGCAAAACAGGTGCTTCTGAATATGAACGTATCTCCTGCTTCAACCTTATGCATGGATTTTttcccttaattttttttttttccatttttaattttttgtttttgggcgAACAGTTTCCGGACCTGCTGTTCATAACTAGCACAGGAGGGCTTTAATGTCGGAGCTCATGCGTATCAAGAGGATTTTATCAGTCACTATGCACGACCTCAAGagtcactaacacacacacacacgcacacgcgcgcgcacgcatATACAAGGgaTCATGCTCGACTGCTCCTTATCGAAAAAGACACGGTTTCCCTGAACGCATGGCTCTGACCACCTTGCAATGAGGATAACTGTTTGAAATAAAGCCGAGGAAAGACATTTGAAGTGCTGTCATGGATTTAAAGGATTTTTACCTATTGGCAACCTTTGTTGCTTGCCTGTGGCTGGATCCAGCCATCGCCCAAGAGCTAATTTACTCAATCCGCGAGGAGCTGCAAGAGAACGTACTTATTGGAAATATACCAAAGGATTTGAACATCTCCCATATGAACGCTGCCAGCAACAATCTGGTTTACCGTCTGGTCTCGAAAGCCGGGGACAACCCATTACTGAGAGTAATGAGCAACACAGGAGAGATTTTTACCACCTCGAACCGTATTGACCGTGAAAAACTCTGTCCTGGCCCGTCCTTCGAGGATACTGAGTGCTCATTTGAAATCGAAGTGGTTATCCTGCCAAACGACTACTTCAGATTAATCAAAATCAAGATCATTGTGAAGGACACCAATGACAACGCTCCGATGTTTCCTTCCCCTGTGATTAACATTTCCATTCCTGAAAACACTCTCATCAACAGCCGCTTTGCCATTCCCTCTGCTACTGATCCTGACATGGGAACCAACAGCGTCCACAAATATGAACTTGTGAACGGACAGAGCACTTTTGGCTTGGATATTGTCGAGACACAGGAAGGAGAAAAATGGCCACAGCTGATCGTCCAGCAGAATCTGGACCGGGAGCAAAAAGACACCTATGTGATGAAAATCAAAGTGGAGGATGGTGGGAATCCACAGAAGTCCAGCACTGCCATTCTTCAGGTGACGGTGACTGATGTCAATGACAATCGTCCAGTTTTCAAAGAAAGTCAGATAGAAGTTCACATTCCTGAAAGCTCTCCAGTCGGGACTTCTGTTGTACAGCTGCAGGCTACGGATGCAGACATTGGCTCCAATGCAGAAATCAAATACATGTTTGGTACCCAAGTATCTCCATCCACACGGAGACTCTTTGCACTAAATGCTACAACTGGACTAATAACAGTACAGAGGCCACTCGATAGGGAAGAGACTGCAATTCATAAGCTGTCAGTTTTAGCAAGTGATGGAAGCTCCAGTCCAGCAAGAGCAACCGTAACGATCAATGTGACTGATGTGAATGATAATGCTCCAAATATAGACCTGAGATACATTATCAGTCCTACTAATGGAACCGTAATGCTGTCTGAAAAAGACCCCATTAACACTAAAATAGCTCTTATCACCGTCTCTGATAAGGACACTGATGTCAATGGCAAGGTGATCTGTTTTATTGAAAAGGATGTGCCATTTCACCTCAAAGCAGTCTATGACAACCAGTACTTGTTGGAAACCTCAGCTCTGTTGGATTACGAGGGGACCAAGGAgtacattttcaaaattgtGGCTTCTGACTCCGGAAAGCCTAGTTTGAACCAGACAGCATTGGTTAAAGTGAAGCTAGAGGATGAGAATGACAATCCACCCATTTTTAGCCAGCCTGTTATTGAACTGTCAGTCATGGAAAATAACCAGCGTGACCTTTTCCTCACAACTATTAGTGCTACAGATGAAGACAGTGGGAGGAATGCAGAAATTGTCTATCAGCTAGGACCCAATGCCTCTTTCTTCGATTTGGACCGCAAAACTGGGGTGCTGACGGCCTCAAGGGTGTTTGACAGAGAAGATCAAGATAGGTTTCTCTTCACCGTCACAGCAAGAGATAATGGTACCCGGGCGTTGCAGAGCCAGGCAGCTGTGATAGTTACCATTTTAGACGAAAATGACAACAGCCCCAAgttcacacacaatcactttcAGTTTTTTGTGTCTGAGAACCTGCCTAAGTATAGTACTGTAGGAGTGATTACAGTcacagatgcagatgcaggtgAAAACGCAGAGGTGTCTCTCTCCATACTCAATGATAACGAGAACTTTATCCTCGATCCCTTTTCCGGAGTTATAAAATCTAATGTTTCCTTCGACAGAGAGCAGCAGAGTTCTTATACTTTCGATGTAAGGGCTGTCGATGGTGGCCGTCCTCCATGCTCATCGGTTGCCAAAGTGACCATCAATGTCATTGATGTCAATGACAACCCACCCATTGTCATCTACCCTCCATCAAACACTTCCTTCAAGCTGGTACCACTTTCTGCCATTCCGGGCTCTGTAGTCGCTGAGGTTTTTGCTGTGGATGGAGATACAGGAATGAATGCTGAATTAAAATACACCATCATTAGTGGTAACGGCAGAGGACTTTTCAGGATAGATCCTGTTACAGGAAACATTACTTTAGAGGAGAAACCCACAGTTGCAGATATTGGCCTCCATCGTCTGGTGGTCAACATTAGCGACCTTGGCTATCCAAAGTCTCTGCACACACTAGTTCTTGTTTTCCTTTACATCAATGACACGGTAGGAAATTCATCTTTTATCTATGACCTCATCCGGCGCACAATGGAGACGCCTCTGGATAGGAATATCGGCGATAGTAGCGAAACATATCAGAACGTTGACAATCTTAAAACCATCATTGCCATTGTCACAGGTGCTATGGTGGTAATCGTGGTGATATTCATTACCGTTCTGGTCCGCTGCCGTCATGTTTCACAGTTTAAAGCAGCTCAGAGGAAGAAACAAGGTGCTGAGTGGATGTCACCCAACCAGGAGAACAAgcagaacaagaagaaaaagcGCAAGAAAAGGAAGTCACCCAAAAGCTCCCTGCTTAATTTCGTTAGCATTGAGGAGAACAAACCTGATGATCCAGCTCACGAACCCATCAATGGCACCATCAGCATCCCAGCTGAGCTCGAGGAGCCGGGGATTGGACGTTTTGACTGGAACACAACACCAACCACCACCTTCAAGCCCAATAGCCCTGATTTGGCCAGGCACTACAAGTCGGCCTCACCCCAGTCAGCTTTCCACGTCAAGGCCGAcactccagtttcagtgaaaaaGCATCACGTCGTTCAGGAGCTGCCCCTTGACAACACTTTCGTCGGGGGATGTGACACTCTTTCCAAGCGCTCGTCCACTAGCTCGGATCACTTCAGTGCCTCAGAGTGCAGCTCCCAAGGAGGCTTCAAGACAAAAGGAGGGACCTTACACAGCAGACAGggGACCCTCACACGTGCTCGGACAGAACTGAACCCTGATTATCTGGACCTGCGCTCTAGAACTGACCTGAACCCTGAATACTGGACCCCGTGCACACCACTGTCTCAACGGCGTGTGACCTTTCACCTTCCAGACGGCTCTCAGGAGAGCTGCAGTGACAGCGGTCTGGGCGAGCCCGAGTCTGTCGGGGGAGGGGCTTTGCTTTCTAAGCCCCTCCCACTTGCACAGGAGGAGTTCTATGAGCAAGACAAAAGAACCGAGGCAGATGGCAACTCTGATCCGAACTCGGATGGACTTTTGGGGCCTAGGGGTCTAATGGAAGCAACAGAGATGTGTACACAGGAGTGTCTGGTACTCGGCCACTCGGATAACTGCTGGATGCCACCCAAATCACCCGCTTCATCCTACGGAGGCGGCCAGAACGAGTGGACGAAAGACAAACTGCTGAATGGTCACACGCTAAACCGTGGCTGGAAGAGCAGCCACGAGCACTTCGGAGACAGGAAATCTTTCAGCGTAGGAGGAGTTGGAGTCAGCGGTCACATAACCGACATTCCATTGGCCAGCTTAAAATCCTATCAGGCCTCTTCTGGCACTGAAAACCCAAAGGAGCAGCAGCTTTAAGAGCATTTACTCCGTAACTgctattttattcctttaaaaaaaaaaaagattattttctttcacatttcctcattttctgTCCTTTTATTAGATGGATGCTAATGCTGTGTGATAGTGAGACGTACAGATTAGACAAGTGCTTATTTACAGTTACTATGCGAAATCGAACTTTGCACGGAAATGTCTCAAGACTTTTGTTctgaagatataaaaaaaaatgtctgggATTTAATGCAAATTGTcatatacaaaacaaaaaaaaaaaaa
>XM_034313653.1
CTGTGTCTGTCTCCCTGCACTCACAGAAGCGCACAGCCGCACGCGCTGCCGCGGACGGCAATCCTGGATtagctttatttctttattatttttttcacgctaaaaaaaaaataataataaagtcaatAAGAAACCTGGGAGCTAATGCATTTATGCATCGTTGAACTTGACTCTCTCGTGCTGGGATAAAATATGGGATGTGTCTGCGCGTCTGTGCAAAACAGGTGCTTCTGAATATGAACGTATCTCCTGCTTCAACCTTATGCATGGATTTTttcccttaattttttttttttccatttttaattttttgtttttgggcgAACAGTTTCCGGACCTGCTGTTCATAACTAGCACAGGAGGGCTTTAATGTCGGAGCTCATGCGTATCAAGAGGATTTTATCAGTCACTATGCACGACCTCAAGagtcactaacacacacacacacgcacacgcgcgcgcacgcatATACAAGGgaTCATGCTCGACTGCTCCTTATCGAAAAAGACACGGTTTCCCTGAACGCATGGCTCTGACCACCTTGCAATGAGGATAACTGTTTGAAATAAAGCCGAGGAAAGACATTTGAAGTGCTGTCATGGATTTAAAGGATTTTTACCTATTGGCAACCTTTGTTGCTTGCCTGTGGCTGGATCCAGCCATCGCCCAAGAGCTAATTTACTCAATCCGCGAGGAGCTGCAAGAGAACGTACTTATTGGAAATATACCAAAGGATTTGAACATCTCCCATATGAACGCTGCCAGCAACAATCTGGTTTACCGTCTGGTCTCGAAAGCCGGGGACAACCCATTACTGAGAGTAATGAGCAACACAGGAGAGATTTTTACCACCTCGAACCGTATTGACCGTGAAAAACTCTGTCCTGGCCCGTCCTTCGAGGATACTGAGTGCTCATTTGAAATCGAAGTGGTTATCCTGCCAAACGACTACTTCAGATTAATCAAAATCAAGATCATTGTGAAGGACACCAATGACAACGCTCCGATGTTTCCTTCCCCTGTGATTAACATTTCCATTCCTGAAAACACTCTCATCAACAGCCGCTTTGCCATTCCCTCTGCTACTGATCCTGACATGGGAACCAACAGCGTCCACAAATATGAACTTGTGAACGGACAGAGCACTTTTGGCTTGGATATTGTCGAGACACAGGAAGGAGAAAAATGGCCACAGCTGATCGTCCAGCAGAATCTGGACCGGGAGCAAAAAGACACCTATGTGATGAAAATCAAAGTGGAGGATGGTGGGAATCCACAGAAGTCCAGCACTGCCATTCTTCAGGTGACGGTGACTGATGTCAATGACAATCGTCCAGTTTTCAAAGAAAGTCAGATAGAAGTTCACATTCCTGAAAGCTCTCCAGTCGGGACTTCTGTTGTACAGCTGCAGGCTACGGATGCAGACATTGGCTCCAATGCAGAAATCAAATACATGTTTGGTACCCAAGTATCTCCATCCACACGGAGACTCTTTGCACTAAATGCTACAACTGGACTAATAACAGTACAGAGGCCACTCGATAGGGAAGAGACTGCAATTCATAAGCTGTCAGTTTTAGCAAGTGATGGAAGCTCCAGTCCAGCAAGAGCAACCGTAACGATCAATGTGACTGATGTGAATGATAATGCTCCAAATATAGACCTGAGATACATTATCAGTCCTACTAATGGAACCGTAATGCTGTCTGAAAAAGACCCCATTAACACTAAAATAGCTCTTATCACCGTCTCTGATAAGGACACTGATGTCAATGGCAAGGTGATCTGTTTTATTGAAAAGGATGTGCCATTTCACCTCAAAGCAGTCTATGACAACCAGTACTTGTTGGAAACCTCAGCTCTGTTGGATTACGAGGGGACCAAGGAgtacattttcaaaattgtGGCTTCTGACTCCGGAAAGCCTAGTTTGAACCAGACAGCATTGGTTAAAGTGAAGCTAGAGGATGAGAATGACAATCCACCCATTTTTAGCCAGCCTGTTATTGAACTGTCAGTCATGGAAAATAACCAGCGTGACCTTTTCCTCACAACTATTAGTGCTACAGATGAAGACAGTGGGAGGAATGCAGAAATTGTCTATCAGCTAGGACCCAATGCCTCTTTCTTCGATTTGGACCGCAAAACTGGGGTGCTGACGGCCTCAAGGGTGTTTGACAGAGAAGATCAAGATAGGTTTCTCTTCACCGTCACAGCAAGAGATAATGGTACCCGGGCGTTGCAGAGCCAGGCAGCTGTGATAGTTACCATTTTAGACGAAAATGACAACAGCCCCAAgttcacacacaatcactttcAGTTTTTTGTGTCTGAGAACCTGCCTAAGTATAGTACTGTAGGAGTGATTACAGTcacagatgcagatgcaggtgAAAACGCAGAGGTGTCTCTCTCCATACTCAATGATAACGAGAACTTTATCCTCGATCCCTTTTCCGGAGTTATAAAATCTAATGTTTCCTTCGACAGAGAGCAGCAGAGTTCTTATACTTTCGATGTAAGGGCTGTCGATGGTGGCCGTCCTCCATGCTCATCGGTTGCCAAAGTGACCATCAATGTCATTGATGTCAATGACAACCCACCCATTGTCATCTACCCTCCATCAAACACTTCCTTCAAGCTGGTACCACTTTCTGCCATTCCGGGCTCTGTAGTCGCTGAGGTTTTTGCTGTGGATGGAGATACAGGAATGAATGCTGAATTAAAATACACCATCATTAGTGGTAACGGCAGAGGACTTTTCAGGATAGATCCTGTTACAGGAAACATTACTTTAGAGGAGAAACCCACAGTTGCAGATATTGGCCTCCATCGTCTGGTGGTCAACATTAGCGACCTTGGCTATCCAAAGTCTCTGCACACACTAGTTCTTGTTTTCCTTTACATCAATGACACGGTAGGAAATTCATCTTTTATCTATGACCTCATCCGGCGCACAATGGAGACGCCTCTGGATAGGAATATCGGCGATAGTAGCGAAACATATCAGAACGTTGACAATCTTAAAACCATCATTGCCATTGTCACAGGTGCTATGGTGGTAATCGTGGTGATATTCATTACCGTTCTGGTCCGCTGCCGTCATGTTTCACAGTTTAAAGCAGCTCAGAGGAAGAAACAAGGTGCTGAGTGGATGTCACCCAACCAGGAGAACAAgcagaacaagaagaaaaagcGCAAGAAAAGGAAGTCACCCAAAAGCTCCCTGCTTAATTTCGTTAGCATTGAGGAGAACAAACCTGATGATCCAGCTCACGAACCCATCAATGGCACCATCAGCATCCCAGCTGAGCTCGAGGAGCCGGGGATTGGACGTTTTGACTGGAACACAACACCAACCACCACCTTCAAGCCCAATAGCCCTGATTTGGCCAGGCACTACAAGTCGGCCTCACCCCAGTCAGCTTTCCACGTCAAGGCCGAcactccagtttcagtgaaaaaGCATCACGTCGTTCAGGAGCTGCCCCTTGACAACACTTTCGTCGGGGGATGTGACACTCTTTCCAAGCGCTCGTCCACTAGCTCGGATCACTTCAGTGCCTCAGAGTGCAGCTCCCAAGGAGGCTTCAAGACAAAAGGAGGGACCTTACACAGCAGACAGaaaccAAGCCAGACAACCAGTGGAGTGGAGCAGGAGCTATAATGAGGCAGGC

Function

symbol description
pcdh9 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system.

NR:

description
PREDICTED: protocadherin-9 isoform X1

GO: NA

KEGG:

id description
K16498 PCDHD1; protocadherin delta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933302.2 True 4516 mRNA 0.46 5 24968550 25170260
XM_034313653.1 False 3677 mRNA 0.46 3 25144818 25170260

Neighbor

gene id symbol gene type direction distance location
brinp3a.2 brinp3a.2,LOC108440126,LOC107711116,LOC108271609,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding downstream 587057 24330165 ~ 24381493 (-)
brinp3a.1 brinp3a.1,LOC108271581,LOC108441513,LOC107585174,LOC107711117,LOC107732447 coding downstream 838524 24077383 ~ 24130026 (-)
rgs8 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding downstream 1049503 23902151 ~ 23919047 (-)
rgs16 LOC108271632,LOC108440142,LOC103040699 coding downstream 1080084 23886767 ~ 23888466 (-)
rgs5a rgs5a,LOC108272128,LOC108441543,LOC107732440,LOC107564083,LOC107685321 coding downstream 1101933 23852014 ~ 23866617 (-)
pou4f1 pou4f1,LOC103143517,LOC107672640,LOC107709069 coding upstream 390530 25560790 ~ 25564089 (-)
obi1 rnf219 coding upstream 399761 25570021 ~ 25580542 (-)
rbm26 rbm26,LOC107672672,LOC107690205,LOC107746592 coding upstream 491740 25662000 ~ 25674496 (-)
stradb stradb,LOC108271608,LOC106573852,LOC107582358,LOC107686750 coding upstream 575123 25745383 ~ 25755348 (-)
trim25l LOC108271643 coding upstream 624966 25795226 ~ 25813178 (-)
G32923 NA non-coding downstream 144116 24824235 ~ 24824434 (-)
LOC117599074 NA non-coding downstream 169125 24794547 ~ 24799425 (-)
G32901 NA non-coding downstream 200540 24767808 ~ 24768010 (-)
LOC117599215 NA non-coding downstream 244698 24708726 ~ 24723852 (-)
G32852 LOC108271908 non-coding downstream 392458 24573182 ~ 24576092 (-)
LOC113538494 NA non-coding upstream 36462 25206722 ~ 25240353 (-)
G33166 NA non-coding upstream 261498 25431758 ~ 25431968 (-)
LOC117599130 NA non-coding upstream 488055 25658315 ~ 25661964 (-)
G33508 NA non-coding upstream 539971 25710231 ~ 25784880 (-)
G33538 fbxl3a,fbxl3,LOC108273248,LOC108436444,LOC107664003,LOC107670904 non-coding upstream 667038 25837298 ~ 25843332 (-)
uap1 uap1,LOC107724142,LOC107551035 other downstream 1336537 23615454 ~ 23632013 (-)
dmrt2b LOC108271504 other downstream 1743002 23222293 ~ 23225548 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 2374689 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 2386607 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 3437122 21449546 ~ 21531428 (-)
nbeal1 nbeal1 other upstream 509830 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 730470 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 910889 26081149 ~ 26105675 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 1460569 26630829 ~ 26638538 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other upstream 1469573 26639833 ~ 26649379 (-)

Expression


Co-expression Network