brinp3a.2 (brinp3a.2,LOC108440126,LOC107711116,LOC108271609,LOC107732449,LOC107685312,LOC107667973,LOC107585215)


Basic Information

Item Value
gene id brinp3a.2
gene name brinp3a.2,LOC108440126,LOC107711116,LOC108271609,LOC107732449,LOC107685312,LOC107667973,LOC107585215
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 24330165 ~ 24381493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933450.2
AGGGGGCGACGAAAGACCTCGCACCCGCGTCTACCGGCGACTATCCGCTCAAacgcgtctctctctctctctctctctctctctctcacacacacacacacacacacgatgccGGAGTAGGGTCAGGCAGAGAAGCGCTTATGCTGACTTTCTAACGGAATATCTAAGACGTGCGTTTACGCACAAGCCTCCGACTGTTTCTTTAGTGCGCACGGTGTCTCTTTTTGGCCGTTTTTAAaggatatcttttttttaatgaaaggttGTCGTGTTTCTACCAGGAACATCCAAGTCGCTATCGGATCACCCCGCGCAGAGCATCATGGATGCGGTTCCTTACCGAAGTTGGCCATCGTGCGGGAGCGCGAGCGCGGACTGAAACACGCAGCCTGGTTCGGCTCTAATGCGAACTCATCAGCGTGCGTGTCATTATTCCTGAAGCCAAACACACGCATGAAGAAGCCCGGTAAACTGGAAATGACTGATGAGCACATTTGGAGCACGAATGGGACGCGCTCAGATGAACTTTGAATGGGGCTCTTTGTCGGGGAGATGGGAGGCCATGTTGATATCCAGTGCTGAGTGGTGGAGCCAGTGAATCCTCTCTCATGGCTTTATGGGAGTTGTTGCTATCTCTCAGCCTTCACTGCTGGCTGGCTTCGTGTGCCAGTTTAAGTGAGGAAGGCCCCGCTGGACCCCTGGACTGGCTCCTCTCCGACAAGGGCCCCTTCCATCACTCCCAGGAGTACACTGACTTCGTGGAGAGGAACCGCCAGGGCTTTTCTACTCGCTACAAGATATACAGGGAGTTCGGACGCTGGAAAGTGAACAACCTGGCTGTGGAGCGGAGGGATTTCCTGGACTCCCCCTTACCCCTCATGCCGGAATTCATCCGCAACATCCGACTCCTTGGACGCAGACCCTCTGCAAAGCTAATTACCGAcaaccttattaaaaaatatgggACGCATTTCCTCCTGTCGGCCACGCTAGGAGgtgaAGAGGCTCTAACCATATTTGTAGACAAGAGGAAGCTTAACAAGAAATCAGAAGTGAGTGACTACACGAGTAACAGCACAGCTGTGACTCTTGAGGCACTCCACCAGTTGGCTGCCTCCTACTtcatagacagagagagcacaCTGCGCAAACTGCACCACCTACAGATTGCCTCCACTGCCATCAAGGTAACTGAAACAAGGACTGGCCCTCTTGGATGCAGTAACTATGACAACCTTGATTCTGTCAGTTCGGTTTTAGTTCAGAGTCCTGAAAACAAAGTCCACTTGCAAGGTTTGCAGGTCATTCTGCCAGACTACCTCAGACATACCTTTGTCCAGGCAGCTCTTGGCTACATTGCCTGCAATGGAGAAGGTGACTTTGTGTGCCGGGATAATGACTGCTGGTGCAAGTGTGACCCAAAGTTCCCAGAATGTAATTGTCCCTACATGGATATTCAAGCCATGCAAGAGAGCCTTCTTCGAATCTCGGAATCATGGGAATTCCTTTACAAAGAATTCAAGGAATCAGATGAGTTCAAGTCATTTCTGATGAGGCTGCCACAGAACTTCTACCTCAACGCCTCTGCAATCCACCACTTATGGCTGCTGGATGGCATGTTTCAGCGGCGCTATGAGCTGCTAGAGAGCAGCATGAAGGGTCTGTTCAGGAGGGCCCAGCGAGTTGTCTACAAGCTCTTCAGTCTGAGCAAGAGGTGTCAAAAGCAGCCCCTTATCAACTTACCACGTGAAAAGCCACGGTCATACTGGCTGAACTACTTCCAGTCATTACTCTACTGCTCAGAGAACAACCAGCTGGGCTTTTTCTCAGAGGAGCTGCACACCTGCATTTGCGCATATGACCAATACTCATGCCAGGCACCCACTCCATGTTCTGTAGGAGAGGGTCCAGCTTGTGCATCCTGTGCCAGTGACAACTACACTCGCTGCGGTAGCTGCAACACTGGCTACATGCTAAATCAAGGAACCTGTCGGCCTATGGTGGCTGATTCCACTGACAACTACCTGGGCTTTGAGACTGACTTGCAGGACCTAGAGCTGCGGTACCTCCTGCAGAGGGCTGATCGTCGCCTAGAGGTCCATGCTATCTTCATTAGCAATGATATGCGCCTCAACAGCTGGTTTGACCCTTCATGGAGGAAGAGAATGTTGCTCACACTAAAGAGCAACAAGTACAAATCCAACTTGGTGCACATGCTTCTGGGGATCTCCCTCCAGATTTGCCTTACTAAGAACAGCACCTTGGAACCTGCCCTTACTCTTTTCATCAACCCCTTTGGTGGGAGCCATTCAGAGAGTTGGTTGATACCTGTAAATGAGAACAAATTCCCAAACTGGCAGTCCACTAAGCTGAACCTTCCACTTGAGTGTTTTAACTGGACCCTAACTCTGGGCAACAAGTGGAAGACGTTCTTTGAGACTATTCACATTTATCTGAGAAGCCACATTAAAACATCAGGTCCTACTGCCAATGAGACTATTTACTTTGAACCTTTGGAAATGGCAGACCCTTCCAGAAACTTGGGTTACATGAAAATCAACAGCATACAAGTTTTTGGTTACAGTATGCATTTCAACCCGGAGGCAATCCGGGACTTGATCCTGCAGCTGGACTATCCGTACACACAGGGCTCACAAGATTCTGCCCTCATGCAGCTGCTAGAGATCCGAGACCGCGTTAACCGACTGTCTCCACCAGGCCAGCAGCCTCTGGACCTGTTCTCCTGCTTACTGCGCCATCGCCTCAAACTCACAGTCAATGAAGTGGTGCGTATCCATTCTTCTCTCCAGGCCTTCAGCGCCCGACTCCCAAACCCTCTTGATTATGAGACAACCAAACTttgtagctaacaaataaaaGGTCGGGCATCTAGAATATGTttacacacagagaggagaCTGCGcatgaataaaagaaattacttaattattgactaaaatactgtatatctttcCACATTCACTCCAAGTGTACTCAAATCAACCAATTCAGTTTTCTTGTATAGAGCAGCACTTAAAACATTTGGTGGGCCTTTGCTATATATGACTGCAaattttctatgttttttttttttttgttgttggttttttttgcttcaGTGACAGTGCACTTTCCTTAAACAGAATACAGTGATGTCAGTatgttttgtagataaattgttattaaaacttcatgtaatattaattatttactagTCTTCTTTTTTGGTTTATCTGTTCAGCAATTTACATACTGGGAAATTATGTCCACCTTTTTATATGATGTAACGATAATGTAAATGAGATTAAACATAAGTGCTTGATTAAATAGTAATATAACATTCATTAACGTAATTACATTATGGCTTGTTATGATAAGctgtctccttctgtctgaaagaatcagaattttttttttaacaaaaaaatgacatggtTGATTAACATTACAGATCATGTGTTTTGTGACAAATTAACAGTGCTGCTCACTGCCATGGCGAAGCTGTGTTAGACTTTCTCAGATGTGTTGATATCATTTTATAAAGTCGGGccttacatttcacacacacacacacacacactcacacaca

Function

symbol description
brinp3a.2 Predicted to be involved in cellular response to retinoic acid; negative regulation of mitotic cell cycle; and positive regulation of neuron differentiation. Predicted to act upstream of or within regulation of cell cycle. Predicted to be active in dendrite; endoplasmic reticulum; and neuronal cell body. Is expressed in several structures, including fin; fin bud; gill; head; and muscle. Human ortholog(s) of this gene implicated in coronary artery disease and myocardial infarction. Orthologous to human BRINP3 (BMP/retinoic acid inducible neural specific 3).

NR:

description
PREDICTED: BMP/retinoic acid-inducible neural-specific protein 3-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933450.2 True 3589 mRNA 0.47 9 24330165 24381493

Neighbor

gene id symbol gene type direction distance location
brinp3a.1 brinp3a.1,LOC108271581,LOC108441513,LOC107585174,LOC107711117,LOC107732447 coding downstream 200139 24077383 ~ 24130026 (-)
rgs8 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding downstream 411118 23902151 ~ 23919047 (-)
rgs16 LOC108271632,LOC108440142,LOC103040699 coding downstream 441699 23886767 ~ 23888466 (-)
rgs5a rgs5a,LOC108272128,LOC108441543,LOC107732440,LOC107564083,LOC107685321 coding downstream 463548 23852014 ~ 23866617 (-)
nos1apa nos1ap,LOC108271954,LOC107551033,LOC107711121,LOC107692421 coding downstream 528101 23671018 ~ 23802064 (-)
LOC113538330 pcdh9,LOC107582331 coding upstream 587057 24968550 ~ 25170260 (-)
pou4f1 pou4f1,LOC103143517,LOC107672640,LOC107709069 coding upstream 1179297 25560790 ~ 25564089 (-)
obi1 rnf219 coding upstream 1188528 25570021 ~ 25580542 (-)
rbm26 rbm26,LOC107672672,LOC107690205,LOC107746592 coding upstream 1280507 25662000 ~ 25674496 (-)
stradb stradb,LOC108271608,LOC106573852,LOC107582358,LOC107686750 coding upstream 1363890 25745383 ~ 25755348 (-)
G32781 NA non-coding downstream 70310 24259306 ~ 24259855 (-)
G32777 NA non-coding downstream 111228 24218493 ~ 24218937 (-)
G32686 NA non-coding downstream 309386 24020125 ~ 24020779 (-)
G32629 NA non-coding downstream 646479 23678782 ~ 23683686 (-)
G32244 NA non-coding downstream 1287403 23042531 ~ 23042762 (-)
G32840 NA non-coding upstream 101170 24482663 ~ 24482990 (-)
G32852 LOC108271908 non-coding upstream 191689 24573182 ~ 24576092 (-)
LOC117599215 NA non-coding upstream 327233 24708726 ~ 24723852 (-)
G32901 NA non-coding upstream 386315 24767808 ~ 24768010 (-)
LOC117599074 NA non-coding upstream 413054 24794547 ~ 24799425 (-)
uap1 uap1,LOC107724142,LOC107551035 other downstream 698152 23615454 ~ 23632013 (-)
dmrt2b LOC108271504 other downstream 1104617 23222293 ~ 23225548 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 1736304 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 1748222 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 2798737 21449546 ~ 21531428 (-)
nbeal1 nbeal1 other upstream 1298597 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 1519237 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 1699656 26081149 ~ 26105675 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 2249336 26630829 ~ 26638538 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other upstream 2258340 26639833 ~ 26649379 (-)

Expression


Co-expression Network