rgs8 (rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081)


Basic Information

Item Value
gene id rgs8
gene name rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23902151 ~ 23919047 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933488.2
tctctccctcCTCTCACTGCTTTCACTTCCCCACGTTTTCACACCGATGAACACGCCAAGTGCTAGCTGCTACATGTGGGCTTCAGCAGACCGCACGCCAAAGCATCAGTGCATCCACAGCTACAGAAAGCAACCAGAATAAATCCATCCGAAATTCAAAAGACACCAAACACTGCACAACAGCACACGGATTAAGaCATACAACCATGAAAACGAGACTTGGTTGCCTATCCAACAAATCTGACTCATGCAGTGACTTTTCAGAATTTTTACCACCTGGACCAGAAAGATCCACACGATACCTGAAGTTATCCACAGATGAAGTGACCAAATGGGCAGATTCATTTGATATTCTCCTGTCAAACAAGTATGGTTTGGCAGCATTCAGAGCATTCCTTAAAACAGAGTTCAGTGATGAGAACATCGAGTTCTGGTTAGCTTGTGAAGATTACAAAAAGATCAAATCACCTGCAAAGCTGGTGTCAAAAGCCAACAAGATCTACAAGGAATTTATTGATGTTCAAGCACCGAGAGAGGTTAATATAGACTTCAGGACCAGGGAAGAGACCAGACAGAAACTTCTGGAACCAACATGCTCCAGTCTCAATGAGATCCAAACCAAGGTCTACAGCCTCATGGAGAAAGACTCCTACCCTAGGTTTCTTCGATCAAAAATCTATCAAGAAATCGTGAACAGGACACAGATGCATTTTCAGCGGAAATCGGTTTAAAGAGGAATGTCCATGTTGTTTTGCTTGTGTGGTTAAAACCTGTAGAGATGTTAGAGCAGACCTTTACTGTTATACATATTGAGTTTGACTGAATATGCATTGTAGAACTGTGAAGGTTGTTTGCACTTGTATAGCGTATATAACCTGTTACTGTGCTACCATGTGAAGTGACCTCCTTCCCAACAATAACACAGATGAATTTATGTTTGTAAAAGCATGTGGATTAAAATTGAGTTT
>XM_034298073.1
CTCAGTTGGATTTATACCACTGTGGACGGTTTAGTAATGGTACATGATGCTTCCTGCAGTCTATTCCATCTGACACAACCACAGCCACaCATACAACCATGAAAACGAGACTTGGTTGCCTATCCAACAAATCTGACTCATGCAGTGACTTTTCAGAATTTTTACCACCTGGACCAGAAAGATCCACACGATACCTGAAGTTATCCACAGATGAAGTGACCAAATGGGCAGATTCATTTGATATTCTCCTGTCAAACAAGTATGGTTTGGCAGCATTCAGAGCATTCCTTAAAACAGAGTTCAGTGATGAGAACATCGAGTTCTGGTTAGCTTGTGAAGATTACAAAAAGATCAAATCACCTGCAAAGCTGGTGTCAAAAGCCAACAAGATCTACAAGGAATTTATTGATGTTCAAGCACCGAGAGAGGTTAATATAGACTTCAGGACCAGGGAAGAGACCAGACAGAAACTTCTGGAACCAACATGCTCCAGTCTCAATGAGATCCAAACCAAGGTCTACAGCCTCATGGAGAAAGACTCCTACCCTAGGTTTCTTCGATCAAAAATCTATCAAGAAATCGTGAACAGGACACAGATGCATTTTCAGCGGAAATCGGTTTAAAGAGGAATGTCCATGTTGTTTTGCTTGTGTGGTTAAAACCTGTAGAGATGTTAGAGCAGACCTTTACTGTTATACATATTGAGTTTGACTGAATATGCATTGTAGAACTGTGAAGGTTGTTTGCACTTGTATAGCGTATATAACCTGTTACTGTGCTACCATGTGAAGTGACCTCCTTCCCAACAATAACACAGATGAATTTATGTTTGTAAAAGCATGTGGATTAAAATTGAGTTT

Function

symbol description
rgs8 Predicted to enable GTPase activator activity. Predicted to be involved in G protein-coupled acetylcholine receptor signaling pathway; positive regulation of GTPase activity; and regulation of dopamine receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and negative regulation of signal transduction. Predicted to be located in dendrite; neuronal cell body membrane; and nucleus. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in forebrain and retina. Orthologous to human RGS8 (regulator of G protein signaling 8).

NR:

description
regulator of G-protein signaling 8-like

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933488.2 True 968 mRNA 0.42 5 23902151 23919047
XM_034298073.1 False 860 mRNA 0.40 5 23902151 23913584

Neighbor

gene id symbol gene type direction distance location
rgs16 LOC108271632,LOC108440142,LOC103040699 coding downstream 13685 23886767 ~ 23888466 (-)
rgs5a rgs5a,LOC108272128,LOC108441543,LOC107732440,LOC107564083,LOC107685321 coding downstream 35534 23852014 ~ 23866617 (-)
nos1apa nos1ap,LOC108271954,LOC107551033,LOC107711121,LOC107692421 coding downstream 100087 23671018 ~ 23802064 (-)
ddr2a ddr2,ddr2a,LOC107594601,LOC107692417 coding downstream 290110 23573494 ~ 23612041 (-)
hsd17b7 hsd17b7,LOC107724130 coding downstream 328792 23564364 ~ 23573359 (-)
brinp3a.1 brinp3a.1,LOC108271581,LOC108441513,LOC107585174,LOC107711117,LOC107732447 coding upstream 158336 24077383 ~ 24130026 (-)
brinp3a.2 brinp3a.2,LOC108440126,LOC107711116,LOC108271609,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding upstream 411118 24330165 ~ 24381493 (-)
LOC113538330 pcdh9,LOC107582331 coding upstream 1049503 24968550 ~ 25170260 (-)
pou4f1 pou4f1,LOC103143517,LOC107672640,LOC107709069 coding upstream 1641743 25560790 ~ 25564089 (-)
obi1 rnf219 coding upstream 1650974 25570021 ~ 25580542 (-)
G32629 NA non-coding downstream 218465 23678782 ~ 23683686 (-)
G32244 NA non-coding downstream 859389 23042531 ~ 23042762 (-)
LOC113538262 NA non-coding downstream 906962 22990447 ~ 22995189 (-)
G32157 NA non-coding downstream 1116461 22711213 ~ 22785690 (-)
G31934 NA non-coding downstream 1333315 22565292 ~ 22568836 (-)
G32686 NA non-coding upstream 101078 24020125 ~ 24020779 (-)
G32777 NA non-coding upstream 299446 24218493 ~ 24218937 (-)
G32781 NA non-coding upstream 340259 24259306 ~ 24259855 (-)
G32840 NA non-coding upstream 563616 24482663 ~ 24482990 (-)
G32852 LOC108271908 non-coding upstream 654135 24573182 ~ 24576092 (-)
uap1 uap1,LOC107724142,LOC107551035 other downstream 270138 23615454 ~ 23632013 (-)
dmrt2b LOC108271504 other downstream 676603 23222293 ~ 23225548 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 1308290 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 1320208 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 2370723 21449546 ~ 21531428 (-)
nbeal1 nbeal1 other upstream 1761043 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 1981683 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 2162102 26081149 ~ 26105675 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 2711782 26630829 ~ 26638538 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other upstream 2720786 26639833 ~ 26649379 (-)

Expression


Co-expression Network