pou4f1 (pou4f1,LOC103143517,LOC107672640,LOC107709069)


Basic Information

Item Value
gene id pou4f1
gene name pou4f1,LOC103143517,LOC107672640,LOC107709069
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 25560790 ~ 25564089 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933502.2
GACACTGCAAGGCATCTCCTCTCTGCACCGGGCTCTCAGATCTCCTAAACTTCACACTACCGCGACCTGagactgcacaacacacacacacatacacacacacacacacagacacacacacagacacacacacacacacaaacaaacaccgCAGCCCTGGACCTGGAGCAGCATCGTCCACTTTAtttacatctttatttatttatgttctcTTAGCCTGCAttagtttttattcaaattattattatttttgtttatttatttcttctcctctgctgtgcactttatttttttcgACGAAGCGGGACGCttttgcagaaaaacaaaacagaaacaccATGATGTCCATGAACAGCAAACAGCCTCATTTCGCCATGCACCCGAGTTTACCCGAGCACAAATACACCACTTTACACTCGAGCTCGGAAGCGATCCGGAGAGCGTGTCTGCAAACTCcacagCTACAGAGCAACATCTTCGCGAGCCTGGATGAGACCCTGCTGGCGCGCGCCGAGGCCCTGGCGGCCGTGGACATGGCGGTGTCGCAGGGCAAAGCGCACCCGTTCAAACCCGACGCCACGTACCACACGATGAACAGCGTGCCGTGCTCGTCCACGTCCACGGTGCCCATCGCGCCGCCGCACCACccgcaccaccaccaccatcaccaccaccaccagaaCCTGGAACCACCGGACCTGATGGAGCACATCAGCTCGCCTTCACTCACCCTGATGAGCAGCGCGCACGAGGCCGGCGGAGGAGCGGGAGGAGGCGgcggtggaggaggtggaggcggcggaggaggtggtggaggcGGCGGATTGATCTCCACCTCGGCGCATCCGCACTCACACATGCACGGCTTGAGCCATCTCTCGCACCAGGCCGCTATGAACATCAACTCCCCGCTCGGACACCACCACCATCCTCACCACCCTCATCCGGGGCTTTTACCCAGCCACCCCGGCAGCGCTCAGGGCGCCTCGGGCCTAATTCCCAACGGACTTCCGTCCCTGCCCGACTCGGATACGGACCCGCGCGAGCTCGAGGCGTTCGCGGAGCGCTTTAAACAACGGCGGATCAAACTCGGTGTCACTCAGGCGGACGTGGGCAGCGCCCTGGCCAACCTGAAAATCCCCGGCGTGGGCTCGCTCAGTCAGAGCACCATATGTAGGTTCGAGTCTCTAACACTATCACACAACAACATGATTGCGCTCAAGCCCATTCTCCAGGCCTGGCTGGAGGAGGCCGAGGGCGCGCAGCGCGAGAAAACGAACAAACCTGAGCTGTTTAACGGCGCCGAGAAGAAGCGCAAGCGCACGTCCATCGCCGCGCCCGAGAAGCGCTCTCTCGAGGCGTACTTCGCCGTTCAGCCGCGACCCTCCAGCGAGAAAATCGCGGCCATCGCCGAGAAACTGGACCTCAAAAAGAACGTGGTGCGCGTCTGGTTTTGCAaccaaagacaaaaacagaaacgGCTGAAATTTTCCGCGGcgcactgatgatgatgatgatgatgatagtgatagtgatggtgatgacaatgatgacagtgatgatgacagtgatgatgatgatgatgatgatgaggaggaggaggacatgTTTTGGACCAAGGGATCTACAATCGTGTTTGTAGGTCTGCTGCGGCCCGGTGGGGTTTTTCATGATCAATcagatttattactttattattgtgGATGAGACTTTACGTGACCCTTCTCGCGCCCTGAATTAATTTAAGATGatgatatttatcatttatttatttatatatttattttcccatGATGCTGAAGTATGCAAACTCCAGGTAATCCAGACTTGCGGAGAACACTTAATGCCTTCTTCCCCAAAAACATCGCAAGAACACAGAAATCCGGggttatttatttgctttttttaatttacttttctttcgtttttttttttttttttagaaacacacttttatttgaaatgatgaaatagcCATGGAAGGATTACCTCATACTCTAAACTCGTCGTCCTGTTTTAGTTCTTATCAGCTGATTTAGTTAGATAATTATATTTAcggattataatttatttcctggcttgtgtgtttgtaaTCGGGAGctttaaaaagtcatttctgATGGAAAAGCAGaggctaaatttaaaaaagaaaaaaagaaaaagagagagaggatacaAAATCTCTGTTTAATGGTTGAGTCTGTAATAGAGGTGGCAACCACCACTTggattagtttgtttttttttatattgcactgaaatacagtatataatttcttaaaattattattattattattattattattattattattcgaaTTGGTTAGCTCTATTGAAATgctttttgtatatataaacatacagacaCCTGCTCACCATGGATTcccattttttcctcttttttttcaaatttatttatttaatttattaatctgtCACTGGTATTATTTTATGATGGCTCTATAACAACTTCGCATGTGTCAGACGATCACATTTCCATCCTGATGGAGCAGAAtgaaggataataataataacaagaaaaaaaaactatatataaaattgtcttttttaattaattaatttatttattttgaatttgtacaCTTTGGTTTGCAGTGCAAACATTCTATGCATTATTAAAGTAATACCGACTGAAGCACTACCGCATTAGAGGACCTGCTGTTAGCCTTGTGGATGGTGTCACTGTttaatgccacacacacacacacacacacacacacacactgttcgtTTTGTCGTGTTAtaattgtccaaaaaaaaagaagagaaagttGTGTAAGTAGTGATTTATTTTGTGCACATATGTTTACAGACGGCGGCCAAGGTGAGTCGCGCGCGCGCTCTGCGTCCCTCTATCtttccacccacccatccatccatctactcatccacccatccacccatccagCCTTCAATCCATCACCCCTTCTGTTTTGTAAAGCCAAATCCACTCCGCGA

Function

symbol description
pou4f1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within heart development. Predicted to be located in nucleus. Is expressed in nervous system. Orthologous to human POU4F1 (POU class 4 homeobox 1).

NR:

description
PREDICTED: POU domain, class 4, transcription factor 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09366 POU4F, BRN3; POU domain transcription factor, class 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933502.2 True 2982 mRNA 0.46 2 25560790 25564089

Neighbor

gene id symbol gene type direction distance location
LOC113538330 pcdh9,LOC107582331 coding downstream 390530 24968550 ~ 25170260 (-)
brinp3a.2 brinp3a.2,LOC108440126,LOC107711116,LOC108271609,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding downstream 1179297 24330165 ~ 24381493 (-)
brinp3a.1 brinp3a.1,LOC108271581,LOC108441513,LOC107585174,LOC107711117,LOC107732447 coding downstream 1430764 24077383 ~ 24130026 (-)
rgs8 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding downstream 1641743 23902151 ~ 23919047 (-)
rgs16 LOC108271632,LOC108440142,LOC103040699 coding downstream 1672324 23886767 ~ 23888466 (-)
obi1 rnf219 coding upstream 5932 25570021 ~ 25580542 (-)
rbm26 rbm26,LOC107672672,LOC107690205,LOC107746592 coding upstream 97911 25662000 ~ 25674496 (-)
stradb stradb,LOC108271608,LOC106573852,LOC107582358,LOC107686750 coding upstream 181294 25745383 ~ 25755348 (-)
trim25l LOC108271643 coding upstream 231137 25795226 ~ 25813178 (-)
LOC113538391 NA coding upstream 247797 25811886 ~ 25817786 (-)
G33166 NA non-coding downstream 128822 25431758 ~ 25431968 (-)
LOC113538494 NA non-coding downstream 320437 25206722 ~ 25240353 (-)
G32923 NA non-coding downstream 736356 24824235 ~ 24824434 (-)
LOC117599074 NA non-coding downstream 761365 24794547 ~ 24799425 (-)
G32901 NA non-coding downstream 792780 24767808 ~ 24768010 (-)
LOC117599130 NA non-coding upstream 94226 25658315 ~ 25661964 (-)
G33508 NA non-coding upstream 146142 25710231 ~ 25784880 (-)
G33538 fbxl3a,fbxl3,LOC108273248,LOC108436444,LOC107664003,LOC107670904 non-coding upstream 273209 25837298 ~ 25843332 (-)
G33621 NA non-coding upstream 513286 26077375 ~ 26077901 (-)
G33617 NA non-coding upstream 525289 26089378 ~ 26109660 (-)
uap1 uap1,LOC107724142,LOC107551035 other downstream 1928777 23615454 ~ 23632013 (-)
dmrt2b LOC108271504 other downstream 2335242 23222293 ~ 23225548 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 2966929 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 2978847 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 4029362 21449546 ~ 21531428 (-)
nbeal1 nbeal1 other upstream 116001 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 336641 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 517060 26081149 ~ 26105675 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 1066740 26630829 ~ 26638538 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other upstream 1075744 26639833 ~ 26649379 (-)

Expression


Co-expression Network