rgs5a (rgs5a,LOC108272128,LOC108441543,LOC107732440,LOC107564083,LOC107685321)


Basic Information

Item Value
gene id rgs5a
gene name rgs5a,LOC108272128,LOC108441543,LOC107732440,LOC107564083,LOC107685321
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23852014 ~ 23866617 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933524.2
TAACAGAGCGGAGCACAGAGACAAATtcaaaaaggaaaaggaatCGTTCATGGTGGTGGATTAACCCTGTGAAGCCAGTACTAAAGAGTCCAAACCATGTGTAAAGGATTAGCTGCCCTGCCTCAGACATGTCTGGAGAGGGCTAAAGGGATCAAGACTAAGTTGGGAACTCTGCTCCAGAAGCCAGAGAATGCCATTGACCTCATCATCCCATACCCTGAAAAGCCTGAGAAGAAAACAGAGAAGCATCAGAAGCCAACCCCTGAAGAGGCTGCCCAGTGGCGTGAGTCTCTGGACCGAGTCCTCATCAACAGCTATGGCCTTGCTACATTCAGGAGCTTCCTGAGATCTGAGTTCAGCGAGGAGAATGTTGAGTTCTGGTTGGCTTGTGAGGATTTTAAGAAGACCAAGTCTCCACTGAAAATGGCCACCAAGGCTAAGAAGATTTATGAAGACTTCATTCAGACTGGTGGACACAAAGAGGTGAACATTGACCATTTCACGAAAGGCGTGACTCTGAGGAACCTGGTTGACCTTTCCGCTGCCACTTTTGACCTGGCTCAGAGCCGCATCTACACCCTGATGGAGAAGGATTCCTTCGGCCGTTTCCTTAGATCTGAGCAGTACCTAGAGCTCCTCAAGTAAACACATTTATCCAGCTGTAGGgagacaaaaataattattttagaaaTCCACCTTTACAAATCCAATTAttatttgttgattattttactttacagaTAATGTAGGAGCCTCAAAATCAATCTGACTAGAAAAATGATCTTGCAGTCTTCCAgaatttggaaaataaatcCAAATTGTCTCCCTGCAGCTTTGCTAAGAACTTGTTGATGACCAAAAGAcctattatttttgtcttaaaaaatGGCAAgacattacattaaacattCAAATTGTATTCATGCATAATGCCAAAGTTTTCAAAGTACTGTCCACAGTTTGTTTTGCATAACCTGTTAGCTGGGATGGAATTTTTGGTTCCCTGTCTACTAAATAAATTGGAAAATCCTAGTCAGACTAATTCCCACTTGTAATTCATTAGACTAGACAAGTGGCTCATGTTTGTGAAGAGAACATCCTGGCCTCTGAGGTGCAATTTGGAGAAGTATCGGAGCACAGTGTTCATCTGTCTGCCGTGAAGTGAGATACGGCTGGTGTGGGGACGGGAGCGAATGACGGGTGCTTTTTCTTGGAAACATCCATGTTAATGTTAACGCTCACATGTAAAAGTGATGGGGAGTTGGGGGGAGGGGGAATACACACTTAAACCCTGAAAGGCCCTTCATAATTTACAGTAAAAGAAGAGTGGGACATGTTTAAATGCACCGAGTCCCTGGGAAAAGCCAGAGTGGAGACTTGTTGTGGTGTGTACGTTGCTAAGATGGGAAAATCAAGTAGGAGTGGTTCTCCATAAAGCAttggaaaactttttttcataCAGAAGGACAGCTTTCCCAAGGAAGTATAAGGGATAATCACAAAAATTACTATAAGCCTATCCTGATTTAATCAAAATCCAATGATGAGTGTCTTTCAAGACAAgcactgaaaatatatataattattattactattattgtcattatgtcattattaatgactGTCTTTTTCCTAAAATCTTGCATGCCCTTGACATGAGCAGCTAATCTTCATTATAGACACGTTGCCTAACATTTGTCAAGTACATGGTATCCATATGTATGAAAATATTTCCCTTATTAAACTTTGCATGTGTGAATCTCACCATATGCACGTACAGTATACtattgcatgttttgttttttcccctattttattgttcagtaaaaacatatatagtatatagcaTTATATGCAGTAATAGGTGGTCCATAAGTCCTTATTGTTATGCCACATAAACTAAAATATTACAACACTGCAGGTCAGAAAACATGACTTattctaaattttaaaaatagaaaatatctATTGATTTTGAAGCATTGGTagtgaattttctttttttttcccctcacatcAAAATTAGATCAAACTAAATTCAAACTGCTGCTAAGGACTTATAGGAGTACCtcatatttaaaagtaaatctaagcaaatacatgtatatgtacTACTGTAGCCACACATAAAATGTATAAGTGCATTAAAGTTGTGAACACCTATTTATTTTTGagatgtaaataatttatagcTATTTGGTTTTCAGTCATTTACAATTTCTTTTCTGTGAATACACATGGTGAGGAGTCTGAA

Function

symbol description
rgs5a Is expressed in bulbus arteriosus; cranial blood vessel; eye; and trunk vasculature. Human ortholog(s) of this gene implicated in essential hypertension. Orthologous to human RGS5 (regulator of G protein signaling 5).

NR:

description
PREDICTED: regulator of G-protein signaling 5

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933524.2 True 2254 mRNA 0.38 5 23852014 23866617

Neighbor

gene id symbol gene type direction distance location
nos1apa nos1ap,LOC108271954,LOC107551033,LOC107711121,LOC107692421 coding downstream 49950 23671018 ~ 23802064 (-)
ddr2a ddr2,ddr2a,LOC107594601,LOC107692417 coding downstream 239973 23573494 ~ 23612041 (-)
hsd17b7 hsd17b7,LOC107724130 coding downstream 278655 23564364 ~ 23573359 (-)
serbp1a serbp1,LOC108271890,LOC107594603,LOC107692416,LOC107758366 coding downstream 291224 23554250 ~ 23560790 (-)
LOC113538489 LOC108271594 coding downstream 348570 23496656 ~ 23503444 (-)
rgs16 LOC108271632,LOC108440142,LOC103040699 coding upstream 20150 23886767 ~ 23888466 (-)
rgs8 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding upstream 35534 23902151 ~ 23919047 (-)
brinp3a.1 brinp3a.1,LOC108271581,LOC108441513,LOC107585174,LOC107711117,LOC107732447 coding upstream 210766 24077383 ~ 24130026 (-)
brinp3a.2 brinp3a.2,LOC108440126,LOC107711116,LOC108271609,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding upstream 463548 24330165 ~ 24381493 (-)
LOC113538330 pcdh9,LOC107582331 coding upstream 1101933 24968550 ~ 25170260 (-)
G32629 NA non-coding downstream 168328 23678782 ~ 23683686 (-)
G32244 NA non-coding downstream 809252 23042531 ~ 23042762 (-)
LOC113538262 NA non-coding downstream 856825 22990447 ~ 22995189 (-)
G32157 NA non-coding downstream 1066324 22711213 ~ 22785690 (-)
G31934 NA non-coding downstream 1283178 22565292 ~ 22568836 (-)
G32686 NA non-coding upstream 153508 24020125 ~ 24020779 (-)
G32777 NA non-coding upstream 351876 24218493 ~ 24218937 (-)
G32781 NA non-coding upstream 392689 24259306 ~ 24259855 (-)
G32840 NA non-coding upstream 616046 24482663 ~ 24482990 (-)
G32852 LOC108271908 non-coding upstream 706565 24573182 ~ 24576092 (-)
uap1 uap1,LOC107724142,LOC107551035 other downstream 220001 23615454 ~ 23632013 (-)
dmrt2b LOC108271504 other downstream 626466 23222293 ~ 23225548 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 1258153 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 1270071 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 2320586 21449546 ~ 21531428 (-)
nbeal1 nbeal1 other upstream 1813473 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 2034113 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 2214532 26081149 ~ 26105675 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 2764212 26630829 ~ 26638538 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other upstream 2773216 26639833 ~ 26649379 (-)

Expression


Co-expression Network