fam183a (fam183a)


Basic Information

Item Value
gene id fam183a
gene name fam183a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23190888 ~ 23193503 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933576.2
CTGTTTGTGGTTGCCAGGCAACAGCAAGCGGAAGCTGAAACAACAGTGTAGAAGACAGTGTGAATTAACTTCAACATTAGGAAAAGAGAGTAGTGAAGAGACATGGCAACGCCAAGTAGGGCTAAAGAGAAAGAGCCTGTGGATATCGTTCACCAAAACGCTATTCATGTGGAGACAATCCTGAAAGAACAGCGGTGTCAGAAGCTTTACACCGAGTTCACCATCAATCCTTTCAAAAAGTTGCATGTTTTACCTGATAAACCCATGTCAAGAAAAATGCACGAAGAGGTTGAGGAGGACCCTGCTTTCCTGAAGATCATTCATGGAGCGCATTCAGAACCAACAAAGAAGTACACTCATCCAATGACTGAGTCTCAAGAAATTGGATGGATTTCTACTCCTCTGATTGCTTCAGATCGCACAGACAGAAGACTGAACTTCCCACGGCAGAATTCTGAAGTCACCAAATACATGGATGCTGCCTGGCGTCTGAAGGAACAAACTCAGAACCGTTGATGAAAGAAGgcacatttttgtttcttctctgtAACTGCCtcagtaatacatttatttggaGTCCTAACCATGCTATCTTCACTATAGATCACCACATCACAATAAATGAACTTAAGTACA

Function

symbol description
fam183a Predicted to be active in ciliary base. Orthologous to several human genes including FAM183A (family with sequence similarity 183 member A).

NR:

description
PREDICTED: protein FAM183A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933576.2 True 636 mRNA 0.42 4 23190888 23193503

Neighbor

gene id symbol gene type direction distance location
LOC113538427 tmem125,LOC108440199 coding downstream 12329 23168378 ~ 23178559 (-)
tie1 tie1,LOC107731644,LOC107684058 coding downstream 74609 23098953 ~ 23116279 (-)
mpl mpl coding downstream 95502 23086607 ~ 23095386 (-)
prpf38a prpf38a,LOC107731643,LOC107684051 coding downstream 119359 23063527 ~ 23071529 (-)
pomgnt1 pomgnt1 coding downstream 128807 23048586 ~ 23062081 (-)
mier1a LOC108272166 coding upstream 273878 23467381 ~ 23477206 (-)
slc35d1a slc35d1,slc35d1a,LOC108272060,LOC108441641,LOC107724140,LOC107684099,LOC107758361 coding upstream 286520 23480023 ~ 23495491 (-)
LOC113538489 LOC108271594 coding upstream 303153 23496656 ~ 23503444 (-)
serbp1a serbp1,LOC108271890,LOC107594603,LOC107692416,LOC107758366 coding upstream 360747 23554250 ~ 23560790 (-)
hsd17b7 hsd17b7,LOC107724130 coding upstream 370861 23564364 ~ 23573359 (-)
G32244 NA non-coding downstream 148126 23042531 ~ 23042762 (-)
LOC113538262 NA non-coding downstream 195699 22990447 ~ 22995189 (-)
G32157 NA non-coding downstream 405198 22711213 ~ 22785690 (-)
G31934 NA non-coding downstream 622052 22565292 ~ 22568836 (-)
G31916 NA non-coding downstream 630280 22538323 ~ 22560608 (-)
G32629 NA non-coding upstream 485279 23678782 ~ 23683686 (-)
G32686 NA non-coding upstream 826622 24020125 ~ 24020779 (-)
G32777 NA non-coding upstream 1024990 24218493 ~ 24218937 (-)
G32781 NA non-coding upstream 1065803 24259306 ~ 24259855 (-)
G32840 NA non-coding upstream 1289160 24482663 ~ 24482990 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 597027 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 608945 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 1659460 21449546 ~ 21531428 (-)
lepr lepr other downstream 1873065 21281364 ~ 21317823 (-)
pex5la pex5l,pex5la,LOC107709207 other downstream 2761563 20359722 ~ 20429325 (-)
dmrt2b LOC108271504 other upstream 28790 23222293 ~ 23225548 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 421951 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 2486587 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 2707227 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 2887646 26081149 ~ 26105675 (-)

Expression


Co-expression Network