slc35d1a (slc35d1,slc35d1a,LOC108272060,LOC108441641,LOC107724140,LOC107684099,LOC107758361)


Basic Information

Item Value
gene id slc35d1a
gene name slc35d1,slc35d1a,LOC108272060,LOC108441641,LOC107724140,LOC107684099,LOC107758361
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23480023 ~ 23495491 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933637.2
CGGGGGAGAACATGGCGGAAGTTGAGAGACGTCAGCGCGGAGAGAAAGAGGAGCAGCGCGCGGAGTAACGGGATgtgaagagggagagagggagagagagagagagagactccgGGATGGCGGACGAAACCCTGACGCTGTTAATCAAGCTGCTCGCCGCGGCTTTTTACGGCGTCAGTTCTTTCCTCATAGTTGTGATCAACAAAAGCGTGCTGACTAACTACAGGTTTCCTTCATCCATATGTCTCGGCATCGGGCAGATGTTGGCCACAGTCTTGGTGCTGTGGGCTGGAAAGGCTCTGCGGGTGATTACTTTCCCTGGCTGGGAGCTTAACATCCTCAGTAAGacCTTTCCTCTACCTCTTCTATATGTTGGCAATCAAGTAACCGGACTGTTTGGAACAAAAAGACTGAATTTGCcaatgtttacagtgttgagGAGGTTCTCCATTCTCTTCACAATGCTTGCTGAGGGCTTTTTGTTAAAgaaGACATTCTCATGGCCCGTTCAACTCACTGTATTCACAATGATCTTTGGGGCTTTTGTGGCTGCAAGTGCCGACTTGTCCTTTGACCTGCAGGGCTATGTATTCATCTTAATGAATGACGTCTTAACTGCTGCTAATGGAGCCTTTGTAAAACAGAAGCTGGACTCTAAGGAGCTGGGAAAGTATGGTCTACTCTATTACAACGCTTTATTTATGATCCTGCCTACACTCCTTTTGGCACACGTAACTGGAGACATGGACAAGGCCCTGGAATACGAGGGCTGGTCAGATGCGCTCTTTGTGGGACAGTTCGTCATGTCTTGCATAATGGgGTTTATCTTGATGTACTCCACCGTGCTCTGCACTCAGTACAACTCAGCATTAACGACTACCATAGTTGGCTGCCTGAAAaataTATTAGTGACTTATATTGGAATGGTGTTTGGAGGGGATTATATTTTCTCCTGGACTAACTTCATAGGTCTGAATATCAGTATTGCTGGTAGTCTGGTGTACTCGTACATAACGTTCACGGAGGAACAGAGCAGCAAACAGGGCGAGAGCATCAACAAGCTGGAGGTGaaggggaaagtggctgtatgAGCAGCGCTTCAGCTCAAAGCATCGAGGAAACCGTATCATTTAGTGTTTTAACTTCGGGTGACCCAGAATGTGAAGAGCAACCACGTCAGGGCCGATGTACAAACATCACCTATGAACTGAACATGAAAAGACACGTCAAGCTGCCAAGTGTGGTATGATGTCATTGCAAAAGAAAGACGACTTtggaggtgttgattatttatcCTCCAGCTTGAGCTCTcagagtttaattttttttaacatatgttTATGGGAGATCTAGACTGTGTTTTGAAACGATCCTggcatgtttctttttttttttggggtacTCTCAACTTgaatttctatattttcttatcaAACTAAACAATATGAATTGTCATTTTATGGCAATATTatgccatttttgtttttgtttccatGAATGTGCCATATTCTTGCTATTTTATGTTAGCATTTTATGTTAGTAGAGGCTTATTATGTTACgttttatgttgttgtttttctcagtATTAGAAATGTCTGTGTAGACATTCCACCTGCTAGGATCATGTAGTAACTTGTTTTTGTGCTCTGCTGTGCTGTTTTTCTTCTAAAGTGAACAATCCGATACTTGCACTTTAAACAGGTCACAGGtactttttttgtaatgaacAATGAGGAAACGTTTACTGTAGGTTAGTGAAAACTTAACAAAGATTTTCCATTGtttttaaaactgcatttaggtgatgagaggaaaaagagaagatgTATGTCCTACGTACATCAGCGTTAATATCATTGGTACTTTTTGACCGAGTCAAAATGTGAAGACAAGTTCAGTCAGTGCTATCTAGATGTTATACATCTGGAATCCTCTGTAATTTGGCTGTATCCAGTCCATATATTTTTGCCTGCATGCAAGACACATagacattaaaacatttatcacacagttgaattttttttctcagatttcAAGCTTAAGGAAGTTATAGCTATAGATGtctttgttcattttgtgttcctttttggttatttttaaaGATCCTCACAGTGCACTGAAAGCATTGAGACATGGACACAGCTTGTATTTACCCTTTGTATTTATCCATTAGacattatttgtatgttttcttttttactgctttttttattttgttcatatcAACAAGAGCTCAGTGATTGTAGCAGTGCAGAACTGAGCTTGCATGTATGTTATTAAAATACCTCAGTTTTCCACTGGTTGGATTTA

Function

symbol description
slc35d1a Predicted to enable antiporter activity and pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in Kupffer's vesicle; forerunner cell group; otic vesicle; and pharyngeal arch. Human ortholog(s) of this gene implicated in schneckenbecken dysplasia. Orthologous to human SLC35D1 (solute carrier family 35 member D1).
slc35d1 Predicted to enable antiporter activity and pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to be involved in carbohydrate transport and pyrimidine nucleotide-sugar transmembrane transport. Predicted to act upstream of or within chondroitin sulfate biosynthetic process; embryonic skeletal system development; and pyrimidine nucleotide-sugar transmembrane transport. Predicted to be located in endoplasmic reticulum. Predicted to be active in Golgi apparatus. Implicated in schneckenbecken dysplasia.

NR:

description
UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15281 SLC35D; solute carrier family 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933637.2 True 2310 mRNA 0.41 12 23480023 23495491

Neighbor

gene id symbol gene type direction distance location
mier1a LOC108272166 coding downstream 2817 23467381 ~ 23477206 (-)
fam183a fam183a coding downstream 286520 23190888 ~ 23193503 (-)
LOC113538427 tmem125,LOC108440199 coding downstream 301464 23168378 ~ 23178559 (-)
tie1 tie1,LOC107731644,LOC107684058 coding downstream 363744 23098953 ~ 23116279 (-)
mpl mpl coding downstream 384637 23086607 ~ 23095386 (-)
LOC113538489 LOC108271594 coding upstream 1165 23496656 ~ 23503444 (-)
serbp1a serbp1,LOC108271890,LOC107594603,LOC107692416,LOC107758366 coding upstream 58759 23554250 ~ 23560790 (-)
hsd17b7 hsd17b7,LOC107724130 coding upstream 68873 23564364 ~ 23573359 (-)
ddr2a ddr2,ddr2a,LOC107594601,LOC107692417 coding upstream 78003 23573494 ~ 23612041 (-)
nos1apa nos1ap,LOC108271954,LOC107551033,LOC107711121,LOC107692421 coding upstream 175527 23671018 ~ 23802064 (-)
G32244 NA non-coding downstream 437261 23042531 ~ 23042762 (-)
LOC113538262 NA non-coding downstream 484834 22990447 ~ 22995189 (-)
G32157 NA non-coding downstream 694333 22711213 ~ 22785690 (-)
G31934 NA non-coding downstream 911187 22565292 ~ 22568836 (-)
G31916 NA non-coding downstream 919415 22538323 ~ 22560608 (-)
G32629 NA non-coding upstream 183291 23678782 ~ 23683686 (-)
G32686 NA non-coding upstream 524634 24020125 ~ 24020779 (-)
G32777 NA non-coding upstream 723002 24218493 ~ 24218937 (-)
G32781 NA non-coding upstream 763815 24259306 ~ 24259855 (-)
G32840 NA non-coding upstream 987172 24482663 ~ 24482990 (-)
dmrt2b LOC108271504 other downstream 254475 23222293 ~ 23225548 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 886162 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 898080 22572432 ~ 22581943 (-)
raver2 raver2 other downstream 1948595 21449546 ~ 21531428 (-)
lepr lepr other downstream 2162200 21281364 ~ 21317823 (-)
uap1 uap1,LOC107724142,LOC107551035 other upstream 119963 23615454 ~ 23632013 (-)
nbeal1 nbeal1 other upstream 2184599 25680090 ~ 25738817 (-)
LOC113538393 NA other upstream 2405239 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 2585658 26081149 ~ 26105675 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 3135338 26630829 ~ 26638538 (-)

Expression


Co-expression Network