snrpb (snrpb,LOC108272150)


Basic Information

Item Value
gene id snrpb
gene name snrpb,LOC108272150
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10906195 ~ 10910484 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937005.2
ACACTTTGCGAGTCGGATCCACTTCCGTTCAGCCACCAATAAAGAAAGGACTCAGCGGCGCCAAGCTATTGGCTTCGCGGGTCAATTTTTGAAAGTTGTTTGGCAGAATCCGATTTAAATCGGAGCCATCTCAACAGCAACCATGACGGTCGGGAAGAGCAGTAAGATGCTGCAGCACATTGACTACAGGATGCGCTGTATACTCCAAGATGGTCGGATATTCATCGGGACATTTAAAGCATTTGACAAGCATATGAACCTCATTCTGTGTGACTGCGACGAGTTCAGAAAGATCAAGCCTAAAAATTCCAAGCAgccagagagggaggagaagcGAGTGTTGGGTTTGGTGTTACTCAGAGGAGAGAATCTGGTCTCCATGACTGTTGAAGGACCACCTCCCAAAGATACTGGCATTGCCAGAGTGCCCCTGGCTGGGGTGGCAGGAGGCCCAGGTGTGGGCAGAGCAGCAGGCAGAGGTGTACCAGCTGGAGCTCCCATGGCACAGGCTCCTGCTGGACTTGCTGGACCAGTGAGAGGAGTCGGGGGCCCATCACAACAGGTGATGACCCCTCAGGGTAGAGGCACAGTGGCTGCAGCAGCGGCTGGTGCTAGCATCGCCGGTGCACCCACACAATATCCACCAGGCCGAGGTGGCCCTCCTCCTCCCATGGGCAGAGGTGCACCACCTCCAGGCATGATGGGTCCTCCCCCAGGCATGAGGCCACCGATGGGCCCCCCAATGGGCATGCCACCAGGCCGCGGTGCCCCCATGGGCATGCCTCCTCCAGGCATGAGACCTCCACCACCAGGAATGAGAGGGCCTCCTCCTCCAGGCATGCGTCCCCCAAGACCTTGATTCGCCACACTGGAAGAGAATGTGTTATGAACCTTTTCTGTTCACAGCTCTGGGCTCTTGTATAGTTTcaaatggttttgttttttgtatttttctttattttaaaataaagtgtctaTTTGGCgtcttgttttaaaaaatga

Function

symbol description
snrpb Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of spliceosomal complex and spliceosomal snRNP complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in cerebrocostomandibular syndrome and mixed connective tissue disease. Orthologous to several human genes including SNRPB (small nuclear ribonucleoprotein polypeptides B and B1).

NR:

description
small nuclear ribonucleoprotein-associated proteins B and B' isoform X2

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K11086 SNRPB, SMB; small nuclear ribonucleoprotein B and B'

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937005.2 True 1002 mRNA 0.54 7 10906195 10910484

Neighbor

gene id symbol gene type direction distance location
ddx27 ddx27,LOC107553908,LOC107587605,LOC107681294 coding downstream 2250 10888412 ~ 10903945 (-)
znfx1 znfx1 coding downstream 21172 10874924 ~ 10885023 (-)
LOC113532783 cdh22,LOC107553911,LOC107666158,LOC107587604,LOC107681302 coding downstream 162750 10552911 ~ 10743445 (-)
gcnt7 LOC108272018,LOC108272017 coding downstream 566868 10335393 ~ 10339327 (-)
eya2 eya2,LOC107666141,LOC106565282 coding downstream 646976 10241254 ~ 10259219 (-)
cbfa2t2 cbfa2t2,LOC107681292,LOC107740270,LOC107666150 coding upstream 75824 10986308 ~ 11011812 (-)
tox2 tox2,LOC107681298,LOC107666148,LOC106565275 coding upstream 159401 11069885 ~ 11169050 (-)
soat2 LOC108272126,LOC108431801,LOC107734612,LOC107681296 coding upstream 518322 11428806 ~ 11441393 (-)
mbd6 mbd6 coding upstream 590104 11500588 ~ 11514630 (-)
mars1 mars coding upstream 611637 11522121 ~ 11536038 (-)
G24623 NA non-coding downstream 735020 10170970 ~ 10171175 (-)
G24620 NA non-coding downstream 737726 10168211 ~ 10168469 (-)
G24617 NA non-coding downstream 744954 10161032 ~ 10161241 (-)
G24611 NA non-coding downstream 754030 10151817 ~ 10152165 (-)
G24572 NA non-coding downstream 967152 9938256 ~ 9939043 (-)
LOC113534445 NA non-coding upstream 56212 10966696 ~ 10984007 (-)
G25184 NA non-coding upstream 111039 11021523 ~ 11021725 (-)
G25185 NA non-coding upstream 111955 11022439 ~ 11022641 (-)
LOC117599085 NA non-coding upstream 347280 11257764 ~ 11262304 (-)
G25320 NA non-coding upstream 416342 11326826 ~ 11329556 (-)
G24760 NA other downstream 415900 10489293 ~ 10490295 (-)
G24516 NA other downstream 1037917 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 1180144 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 1464350 9435506 ~ 9441845 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other downstream 2422014 8479374 ~ 8484181 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other upstream 5558 10916042 ~ 10934164 (-)
kif5ab kif5a other upstream 531987 11442471 ~ 11485469 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 776261 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 2583028 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 2721778 13632262 ~ 13634744 (-)

Expression


Co-expression Network