psmf1 (psmf1,LOC107580402)


Basic Information

Item Value
gene id psmf1
gene name psmf1,LOC107580402
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5982584 ~ 5989372 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937756.2
TTTTCTAACGGACTACTGTTGGACCggtagccaaaaaaaaaaaacaaaaacagttttgttttcGTTTTCCCTGAAGTGTGCAAAGCCATGGCGGGACTCGAGCTGTTATATACTTGTGTGTCGAGTTCTATAACCTCTCCTCAAGATGCGGTTGTGTGTTTTATCCACTGGGAAATAGTGAAGAGTGGATATAAATGTTTAGGAACCGGAGATGAGCCTCAAAATGGAGAGAAGAAATCAGAGTTGCTTCCTGCATCCTGGAACACAAACAAGGAGCTGTACACACTGAGATACAGATCAAATGATGACAAGTACAACCTGCTCCTCAAAGCCATCACAGTTGATTCCAGCTTGATTTTCAACTTAATGGATTCAGCCACAGACAAAGTCACAGACCTGACTGTTAATGTTAGTGATTATGTAAATGAAGCAAACCTACAGTCATTTGAAAGTGTGTACAAGAACACAGAAGATTTGGTTAAGAGGCTGAAGACATCACTACTACCTGCAGTGAAAGAAGAGGGAAGTGCgaggaaagaaaggagagagagattcacagacacacagcccCAGCCAGACCATGATCCCCTGTCCATACCTACCAGAGGTCCCCCTGCTTCGTACCCCCCAAACTGGACAGACCCACTGAATCCATTTGCTGCAGGGAGAGCTGATCTTGATCCCTTCAGTGGGACAGCAGAAGGCATGATTGTGGATCCATTACGAGCAGGCTTCCCACGTTCTGGCTTTGACCCTTCAAGTGGCATACCTGGAGTCCTCCCTCCAGGTGCTGTGCCCCCTGGTGCCCGCTTTGACCCTTTTGGACCAGTTGGCAGACACAGAGCTGGGCCAGACCCTGATCACCTCCCCCGGCCAGGCTATGATGACATGTTCATGTAGAAGATTATAATTCACATCCTGGTTCTCCTGGAAGACTGCCTGTTCCCTTAATGTACTACatttctcatctctctgctttgCAGTGAACAAAGGACAACAACTTCATGTCTTGCTACATTTAGGTTTTGCTGGATTGATCGCTACTCAATTCGAAAGTGGGTTAATGCcttcatttttacaaaatttcgAAATTCAGTAAAACTGATGAAGCCCTTTGAGTGATATTTATTCAGCTCACCAATCACAACTTAAGTTTCTACCTAAAATTAGTTCATGTTTACAGTTTGACATGTATAAATGGACGACAGACTCTCAATAAGAGGTCTtatgacctctcattaaatatgTGTAGAGATATTactaagaaaaataaagcttggaaagaagagatca

Function

symbol description
psmf1 Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in endoplasmic reticulum. Orthologous to human PSMF1 (proteasome inhibitor subunit 1).

NR:

description
proteasome inhibitor PI31 subunit

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K06700 PSMF1; proteasome inhibitor subunit 1 (PI31)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937756.2 True 1293 mRNA 0.44 7 5982584 5989372

Neighbor

gene id symbol gene type direction distance location
chd6 chd6,LOC107666014 coding downstream 119151 5761737 ~ 5863433 (-)
pigu pigu,LOC107554168,LOC107596774,LOC107666169,LOC107708084 coding downstream 302625 5659803 ~ 5679959 (-)
osgn1 LOC108272601 coding downstream 331299 5638596 ~ 5651285 (-)
mtss1 mtss1,LOC108273055,LOC108433704,LOC107708130,LOC107685817,LOC107554179 coding downstream 351327 5594109 ~ 5631257 (-)
LOC113532874 cyc1,LOC108433700,LOC108272604,LOC107666085,LOC103023575,LOC107729751,LOC107554183,LOC108414617 coding downstream 462231 5508012 ~ 5520353 (-)
rims4 rims4,LOC107666126,LOC107708122,LOC107696477 coding upstream 66450 6055822 ~ 6118568 (-)
LOC117599288 NA coding upstream 162029 6151401 ~ 6160674 (-)
tomm34 tomm34,LOC100305086 coding upstream 191656 6181028 ~ 6195188 (-)
eif6 eif6,LOC107723919 coding upstream 315800 6305172 ~ 6313411 (-)
mmp24 mmp24,LOC107723920,LOC107587563,LOC107696473,LOC107666082 coding upstream 334742 6324114 ~ 6362835 (-)
LOC117595835 NA non-coding downstream 91752 5889282 ~ 5890832 (-)
G22237 NA non-coding downstream 111883 5870500 ~ 5870701 (-)
G22231 NA non-coding downstream 118483 5863865 ~ 5864101 (-)
G22229 NA non-coding downstream 187437 5794942 ~ 5795147 (-)
G22199 NA non-coding downstream 246888 5730446 ~ 5735696 (-)
G22345 NA non-coding upstream 598 5989970 ~ 5990195 (-)
G22367 NA non-coding upstream 53744 6043116 ~ 6043752 (-)
G22470 NA non-coding upstream 159574 6148946 ~ 6149167 (-)
G22478 NA non-coding upstream 240388 6229760 ~ 6229969 (-)
G22539 NA non-coding upstream 293743 6283115 ~ 6283948 (-)
blcap blcap,bc10 other downstream 17401 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 446524 5532037 ~ 5536060 (-)
LOC113533127 NA other downstream 568498 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 781372 5111462 ~ 5201212 (-)
obsl1a obsl1 other downstream 1080573 4813275 ~ 4902011 (-)
LOC117596222 NA other upstream 84663 6074035 ~ 6076877 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 215912 6205284 ~ 6208666 (-)
G22591 NA other upstream 490030 6479402 ~ 6480011 (-)
mitfa mitf,LOC108424034 other upstream 2271113 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 2354252 8343624 ~ 8351694 (-)

Expression


Co-expression Network