soat2 (LOC108272126,LOC108431801,LOC107734612,LOC107681296)


Basic Information

Item Value
gene id soat2
gene name LOC108272126,LOC108431801,LOC107734612,LOC107681296
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11428806 ~ 11441393 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938020.2
AGAGAGAAGAGGCAACAGCTGAGCCAACGCATGGACCTGGGACACAGGACGAAGTTCAGGATAGGGAATCAAAAGGACAGACTTCTgtcacacacgtgcacacacacacacacacacacacccaacagaTAATCCTGGTGCTCGGAGGGAAGGATGTAGAAGGTTTGACGAAGAGAAGAGGTTAAAGATGCAACTCAAGTCAAGCTAATTCCAGCTAAAACCTTCTGCAAGTGGAATAATCATGGCAGCCAGCAAGACTAGCAGTAATGTGGTGCATCGTGCCAGTGGACTGTCATCCCATAGTAGTCCTTCTCCCACAGAAAACGGGCCTGTCAGACAGGATGCCAAACACACAGAGTTTAATTCAGAAGATATGCAGCAGTGGACAAGGCATGTAGAGCGGATAAAAGCAAAGGTCATTGAGCAAGTAAAAGCTCAGATGAGTGAGGTGTTGGACAAAGTGCTTACAGACTCATTGCAGTCGTTCTCCCAAAGCACACATTCAAATGCAGTTGAGAATACACACCAACAGACTGATGGAAAAACTAGGAgACATAGAATGCAGGATGGAAAGGTGTTTGTTGCCAGGCAGTCCATACTTGAcGAGCTGTTTGAGATCAGTCACATCCGGACCATTTATCACATGTTCATTGCTGCTCTCTTACTTTTCATCATCAGCACATTGGCAGTGGATTACATTGACCAGGGCAGGCTGGTTCTAGATTTTGACTTGTTCTTCTATGCCTTTGGTCAGCTGGGCACTGTCATATGGGCCTGGCTTATCATGTTCAGTTACACCCTGCTTGGACCATACTATATTCTGAGCCAGTGGCAGGAACTGTACCATCACTTCCAGTGGAAGAAGCCAGTATCAGTAGCAACAGCTGTGGTGCTGTTGGCAGCTGAAATGAGTGTGCTGGGTTATTTTCCTGTATATGTTGTCCTGCACTACCAGTTGCCCCCAGCATCAcgcttcatcatcatccttgAACAGATAAGATTCCTGATGAAGAGCTATTCCTTTATTCGGGAGACGGTGGTGGCAGTCCTCAGAGCCAAATCAAAGAAAGGTGAGGCTGCCAGATTCCCTGCTCTTTCCAGCTATCTATACTTCCTGTTTTGCCCAACTCTGATCTACAGGGAGACATACCCTCGAAACCCTTATATCAGATGGAACTATGTGGGGAGGAACTTTGCAATGATTTTGGGAAGTCTGTTTTACCTCTACTTTATCCTGGTACGTCTGTGTATCCCTGTGTATAAGAATGAGAGCAATCAGCCATTCAGTCGACGCACTCTGGTTCTGGCTGTGTTTCACTCAACCTTACCAGGTATGCTGATGCTCCTACTGGgcttttttgcttttctgcACTGTTGGCTCAATGCCTTTGCCGAGATGCTGCGCTTTGCTGATCGGATGTTTTACAAAGACTGGTGGAACTCCACCTCGTTCGCTAACTACTACCGCACCTGGAACATTGTGGTGCATGACTGGCTCTATTATTATGCCTACAGGGACTTCCTCTGGTTATCGGGTCATCGTCTCCGCTCAGTAGCCACACTGTCTGTGTTCGCAGTTTCAGCTTTTGTTCATGAATATGCTTTTACCATGGGCTTTGGCTTTTTCTACCCTGTGATGTTCTGTCTGTTCGCAGTTATTGGAGTGGTCTTCAACTTCACCCTCAATGACAAGCGCAAAGGTCCTGTGTGGAACATTATTATGTGGACATGTCTGTTCATTGGTCAAGGTGTGCAGGTGTGCCTATACTGCTTGGAATGGTACGCTCAGGTTCACTGCCCACGTACTGGGACAGGGTTCTGGGAGTTGGTGACACCAAGATCCTGGACATGTAGTTATAAGGGATAACATCTAATGCTATCTAATGCTGCTACAGTCATTGTTACTTTATATGATGACTGCAGTTGATCTAGGCATAGCAAAAGGCAATATACAGCCtgatcatcatcgtcatcatcatcatcatccatcaatCATCATCCCAACATCAACTCATCAATAATGTGGtgtctacactatatggccaaagatttgtggacacctggccatcacacccatttgtggGCCTTCTTTAAACAGTTGCAAGAAAGTTGGAAGCagacaattgtataggatgtcactgtatgctgtagcaatacgacttcccttcactggaactaacaggtccaaacctgttccagcatgtgaacgcctttgggatgaaatgaaatgctgactgcgccccaggcctccttccccaacatcagtgcctgacctcactaatccCCACAACCATGTCCCAGAAGAGTAGAAGACTCAAagtggggactaaatctggagtgGGACATTCAAAAAGCATATATAGGTTCAATGGTCAGGTGTTTACAAACCTTTGGCCGTATAATGTATTTATCATCTTGCTGGACAATTCATACTACGTAATGAATTGGACTAAATAGAGACTGAAAAACAGGCCCGGTATGTTCAAAAGTGACAGTTCAATACCTTCCAAGGTATCTCatgagagacaaaaagaagcaTTAAATGCATATCTGTATGCTTAATTTTTCTCCTTCTTGCTTCCTGTAACTTGTTAACTGTGCACTgtgtaataacaaaataataaaatgccttCCATATACTGATAA

Function

NR:

description
PREDICTED: sterol O-acyltransferase 2-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
K00637 SOAT; sterol O-acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938020.2 True 2646 mRNA 0.45 16 11428806 11441393

Neighbor

gene id symbol gene type direction distance location
tox2 tox2,LOC107681298,LOC107666148,LOC106565275 coding downstream 259756 11069885 ~ 11169050 (-)
cbfa2t2 cbfa2t2,LOC107681292,LOC107740270,LOC107666150 coding downstream 416994 10986308 ~ 11011812 (-)
snrpb snrpb,LOC108272150 coding downstream 518322 10906195 ~ 10910484 (-)
ddx27 ddx27,LOC107553908,LOC107587605,LOC107681294 coding downstream 524861 10888412 ~ 10903945 (-)
znfx1 znfx1 coding downstream 543783 10874924 ~ 10885023 (-)
mbd6 mbd6 coding upstream 59195 11500588 ~ 11514630 (-)
mars1 mars coding upstream 80728 11522121 ~ 11536038 (-)
LOC113531982 LOC108272195 coding upstream 145511 11586904 ~ 11612295 (-)
gli1 gli1 coding upstream 177578 11618971 ~ 11660989 (-)
rbm19 rbm19,LOC100304870,LOC107666967 coding upstream 541569 11982962 ~ 11994574 (-)
G25320 NA non-coding downstream 99250 11326826 ~ 11329556 (-)
LOC117599085 NA non-coding downstream 166502 11257764 ~ 11262304 (-)
G25185 NA non-coding downstream 406165 11022439 ~ 11022641 (-)
G25184 NA non-coding downstream 407081 11021523 ~ 11021725 (-)
LOC113534445 NA non-coding downstream 444799 10966696 ~ 10984007 (-)
G25476 NA non-coding upstream 16581 11457974 ~ 11458190 (-)
G25484 NA non-coding upstream 57852 11499245 ~ 11500508 (-)
G25478 ddit3 non-coding upstream 76095 11517488 ~ 11534525 (-)
G25553 NA non-coding upstream 255686 11697079 ~ 11698078 (-)
G25570 NA non-coding upstream 296174 11737567 ~ 11738741 (-)
itcha itcha,LOC108271999,LOC108431834,LOC107681287,LOC107666068 other downstream 494642 10916042 ~ 10934164 (-)
G24760 NA other downstream 938511 10489293 ~ 10490295 (-)
G24516 NA other downstream 1560528 9863367 ~ 9868278 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other downstream 1702755 9715516 ~ 9726051 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other downstream 1986961 9435506 ~ 9441845 (-)
kif5ab kif5a other upstream 1078 11442471 ~ 11485469 (-)
LOC113526127 LOC108272031,LOC108431803 other upstream 245352 11686745 ~ 11764135 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other upstream 2052119 13493512 ~ 13502170 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other upstream 2190869 13632262 ~ 13634744 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other upstream 2198988 13640381 ~ 13647177 (-)

Expression


Co-expression Network